Wall clock time and date at job start Mon Mar 30 2020 02:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38345 * 125.61618 * 2 1 4 4 C 1.39882 * 125.70934 * 359.75443 * 3 2 1 5 5 H 1.07994 * 120.00038 * 359.97438 * 4 3 2 6 6 C 1.40120 * 120.00135 * 179.97438 * 4 3 2 7 7 N 1.30801 * 119.99639 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00144 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47283 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47269 * 119.99981 * 8 6 4 11 11 H 1.48500 * 109.47326 * 240.00289 * 8 6 4 12 12 C 1.39187 * 108.58264 * 180.02562 * 3 2 1 13 13 C 1.40759 * 107.52305 * 0.02562 * 12 3 2 14 14 C 1.38144 * 125.62323 * 180.02562 * 2 1 3 15 15 C 1.38809 * 132.68603 * 359.97438 * 14 2 1 16 16 C 1.38125 * 120.17024 * 179.97438 * 15 14 2 17 17 C 1.38674 * 120.78112 * 359.97438 * 16 15 14 18 18 C 1.38135 * 120.37411 * 0.02562 * 17 16 15 19 19 O 1.35729 * 120.22137 * 179.97438 * 18 17 16 20 20 H 1.09003 * 109.46952 * 89.98170 * 1 2 3 21 21 H 1.09001 * 109.46975 * 209.97215 * 1 2 3 22 22 H 1.08991 * 109.47562 * 329.97374 * 1 2 3 23 23 H 0.97000 * 119.99355 * 179.97438 * 7 6 4 24 24 H 1.08003 * 126.24170 * 179.97438 * 12 3 2 25 25 H 1.07994 * 119.91308 * 0.02562 * 15 14 2 26 26 H 1.08000 * 119.60833 * 180.02562 * 16 15 14 27 27 H 1.07996 * 119.81115 * 180.02562 * 17 16 15 28 28 H 0.96699 * 113.99954 * 269.97668 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.1247 0.0000 4 6 1.8228 2.4498 -0.0049 5 1 0.7639 2.6619 -0.0095 6 6 2.7480 3.5021 -0.0037 7 7 4.0305 3.2452 0.0024 8 14 2.1499 5.2717 -0.0110 9 1 0.6651 5.2924 -0.0167 10 1 2.6495 5.9681 1.2019 11 1 2.6597 5.9616 -1.2231 12 6 3.6015 0.7169 -0.0006 13 6 3.6135 -0.6906 -0.0016 14 6 2.2696 -1.1229 -0.0005 15 6 1.9884 -2.4822 -0.0007 16 6 3.0171 -3.4040 -0.0017 17 6 4.3407 -2.9902 -0.0032 18 6 4.6518 -1.6444 -0.0031 19 8 5.9483 -1.2429 -0.0040 20 1 -0.3633 0.0003 -1.0277 21 1 -0.3633 -0.8902 0.5134 22 1 -0.3634 0.8896 0.5142 23 1 4.6710 3.9737 0.0028 24 1 4.4671 1.3628 -0.0011 25 1 0.9626 -2.8199 -0.0008 26 1 2.7879 -4.4594 -0.0023 27 1 5.1327 -3.7244 -0.0045 28 1 6.3246 -1.1265 0.8791 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214445910.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:49 Heat of formation + Delta-G solvation = -15.591615 kcal Electronic energy + Delta-G solvation = -14071.458715 eV Core-core repulsion = 11665.770797 eV Total energy + Delta-G solvation = -2405.687917 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.61039 -38.82664 -36.64634 -35.40984 -32.97472 -30.72037 -29.64549 -27.33813 -26.42439 -22.96961 -22.00489 -21.22094 -18.82412 -18.66679 -17.54914 -16.79097 -16.19418 -15.92786 -15.73672 -15.16211 -14.87229 -14.22249 -13.69994 -13.44036 -13.28889 -13.00357 -12.81532 -12.73602 -12.25414 -11.92263 -11.81953 -11.69965 -11.16721 -11.09384 -10.00157 -8.99066 -8.54365 -8.13315 -6.33686 0.44943 0.98435 1.39398 1.41539 1.56587 2.14052 2.22860 2.49548 3.13479 3.35777 3.71673 4.18939 4.25455 4.43831 4.53653 4.59253 4.71135 4.92777 5.04124 5.08122 5.21050 5.51755 5.72828 5.77305 5.93353 5.96310 6.13313 6.33445 6.71839 6.76433 7.05476 7.14044 7.25999 8.32266 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.037739 B = 0.009885 C = 0.007872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.763099 B = 2831.952688 C = 3556.038719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.525 5.525 3 C 0.236 3.764 4 C -0.466 4.466 5 H 0.091 0.909 6 C 0.024 3.976 7 N -0.813 5.813 8 Si 1.007 2.993 9 H -0.250 1.250 10 H -0.265 1.265 11 H -0.267 1.267 12 C -0.362 4.362 13 C -0.107 4.107 14 C 0.034 3.966 15 C -0.127 4.127 16 C -0.149 4.149 17 C -0.162 4.162 18 C 0.054 3.946 19 O -0.509 6.509 20 H 0.062 0.938 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.287 0.713 24 H 0.141 0.859 25 H 0.132 0.868 26 H 0.152 0.848 27 H 0.135 0.865 28 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.635 -3.887 1.766 6.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.215 5.215 3 C 0.130 3.870 4 C -0.499 4.499 5 H 0.109 0.891 6 C -0.192 4.192 7 N -0.438 5.438 8 Si 0.827 3.173 9 H -0.173 1.173 10 H -0.190 1.190 11 H -0.192 1.192 12 C -0.385 4.385 13 C -0.112 4.112 14 C -0.070 4.070 15 C -0.149 4.149 16 C -0.168 4.168 17 C -0.181 4.181 18 C 0.010 3.990 19 O -0.320 6.320 20 H 0.081 0.919 21 H 0.108 0.892 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.158 0.842 25 H 0.150 0.850 26 H 0.169 0.831 27 H 0.153 0.847 28 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -4.810 -3.797 1.156 6.236 hybrid contribution 0.261 0.887 0.460 1.033 sum -4.550 -2.910 1.616 5.637 Atomic orbital electron populations 1.21782 0.76693 1.03948 1.02451 1.44437 1.05874 1.03943 1.67266 1.18513 0.88778 0.86563 0.93115 1.19105 0.95576 0.88717 1.46485 0.89137 1.26931 0.94162 1.06406 0.91695 1.69888 1.03501 1.35775 1.34640 0.84778 0.79782 0.73944 0.78832 1.17336 1.18968 1.19203 1.21620 0.97083 0.91558 1.28274 1.19131 0.93130 0.95258 1.03698 1.18505 0.89739 0.89138 1.09579 1.20165 1.00164 0.88420 1.06122 1.20661 0.90844 0.99354 1.05966 1.21079 0.97831 0.93337 1.05892 1.18269 0.82092 0.91276 1.07408 1.84669 1.23404 1.90074 1.33824 0.91922 0.89210 0.90272 0.90192 0.84164 0.85020 0.83071 0.84670 0.75690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.25 10.81 127.77 1.38 4.63 15 2 N -0.52 -25.26 3.25 -530.00 -1.72 -26.98 15 3 C 0.24 13.13 6.65 38.74 0.26 13.38 15 4 C -0.47 -24.44 8.96 23.13 0.21 -24.23 15 5 H 0.09 4.30 7.07 -2.91 -0.02 4.28 15 6 C 0.02 1.19 5.50 85.30 0.47 1.66 15 7 N -0.81 -43.42 10.18 21.86 0.22 -43.20 15 8 Si 1.01 36.98 29.56 68.60 2.03 39.01 15 9 H -0.25 -8.61 7.11 99.48 0.71 -7.91 15 10 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 11 H -0.27 -9.55 7.11 99.48 0.71 -8.84 15 12 C -0.36 -21.44 9.78 23.11 0.23 -21.21 15 13 C -0.11 -5.75 6.09 -21.27 -0.13 -5.88 15 14 C 0.03 1.63 6.81 39.01 0.27 1.90 15 15 C -0.13 -4.98 9.94 22.38 0.22 -4.76 15 16 C -0.15 -5.30 10.01 22.35 0.22 -5.08 15 17 C -0.16 -6.32 9.96 22.35 0.22 -6.10 15 18 C 0.05 2.57 6.77 22.92 0.16 2.73 15 19 O -0.51 -22.67 13.50 -90.52 -1.22 -23.89 15 20 H 0.06 2.02 8.14 -2.39 -0.02 2.00 15 21 H 0.09 2.59 8.10 -2.39 -0.02 2.57 15 22 H 0.08 2.66 7.28 -2.39 -0.02 2.64 15 23 H 0.29 13.77 8.30 -92.71 -0.77 13.00 15 24 H 0.14 8.85 5.58 -2.91 -0.02 8.84 15 25 H 0.13 4.18 8.05 -2.91 -0.02 4.16 15 26 H 0.15 4.02 8.06 -2.91 -0.02 3.99 15 27 H 0.14 4.41 8.06 -2.91 -0.02 4.39 15 28 H 0.39 13.50 9.06 -74.06 -0.67 12.83 15 Total: -1.00 -68.05 246.76 3.33 -64.72 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.52 Total: 33.30 kcal Atomic # 6 Polarization: -46.46 SS G_CDS: 3.50 Total: -42.96 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -1.50 Total: -70.18 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -1.22 Total: -23.89 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Total: -68.05 3.33 -64.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214445910.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.132 kcal (2) G-P(sol) polarization free energy of solvation -68.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds