Wall clock time and date at job start Mon Mar 30 2020 02:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.35662 * 125.37391 * 2 1 4 4 H 0.96991 * 124.69339 * 0.02562 * 3 2 1 5 5 C 1.38142 * 110.61357 * 180.02562 * 3 2 1 6 6 C 1.39177 * 132.76697 * 180.02562 * 5 3 2 7 7 C 1.37912 * 120.09476 * 179.97438 * 6 5 3 8 8 C 1.38553 * 120.68082 * 0.02562 * 7 6 5 9 9 C 1.38469 * 120.18206 * 359.97225 * 8 7 6 10 10 O 1.35822 * 120.21196 * 179.97438 * 9 8 7 11 11 C 1.39641 * 119.57887 * 0.25721 * 9 8 7 12 12 C 1.38948 * 125.37761 * 179.97438 * 2 1 3 13 13 C 1.40893 * 126.93123 * 0.03367 * 12 2 1 14 14 H 1.07995 * 119.99632 * 218.45529 * 13 12 2 15 15 C 1.39693 * 120.00089 * 38.46034 * 13 12 2 16 16 N 1.31076 * 119.99877 * 18.95609 * 15 13 12 17 17 Si 1.86793 * 120.00127 * 198.95367 * 15 13 12 18 18 H 1.48505 * 109.47252 * 90.00150 * 17 15 13 19 19 H 1.48500 * 109.47484 * 209.99972 * 17 15 13 20 20 H 1.48500 * 109.47418 * 330.00169 * 17 15 13 21 21 H 1.08994 * 109.47600 * 91.11343 * 1 2 3 22 22 H 1.09012 * 109.46836 * 211.10726 * 1 2 3 23 23 H 1.09000 * 109.47374 * 331.10192 * 1 2 3 24 24 H 1.08007 * 119.94994 * 0.02562 * 6 5 3 25 25 H 1.07998 * 119.65980 * 179.97438 * 7 6 5 26 26 H 1.08002 * 119.90969 * 179.97438 * 8 7 6 27 27 H 0.96701 * 114.00020 * 90.00058 * 10 9 8 28 28 H 0.97002 * 119.99443 * 174.70902 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2923 1.1062 0.0000 4 1 1.9616 2.0180 0.0004 5 6 3.6281 0.7542 -0.0006 6 6 4.8023 1.5015 -0.0004 7 6 6.0263 0.8661 -0.0006 8 6 6.1048 -0.5172 -0.0015 9 6 4.9492 -1.2801 -0.0017 10 8 5.0255 -2.6361 -0.0032 11 6 3.7049 -0.6463 -0.0064 12 6 2.3114 -1.1329 0.0005 13 6 1.8832 -2.4752 0.0004 14 1 2.4167 -3.2121 0.5824 15 6 0.7688 -2.8529 -0.7525 16 7 0.3469 -2.0863 -1.7284 17 14 -0.1200 -4.4503 -0.3686 18 1 -1.1906 -4.1940 0.6281 19 1 -0.7218 -4.9934 -1.6128 20 1 0.8457 -5.4337 0.1842 21 1 -0.3634 -0.0200 -1.0274 22 1 -0.3633 -0.8800 0.5310 23 1 -0.3634 0.8997 0.4966 24 1 4.7547 2.5805 0.0008 25 1 6.9330 1.4528 -0.0008 26 1 7.0700 -1.0018 -0.0021 27 1 5.0480 -3.0298 0.8798 28 1 -0.3781 -2.3839 -2.3000 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214446545.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:58 Heat of formation + Delta-G solvation = -18.461880 kcal Electronic energy + Delta-G solvation = -14244.601675 eV Core-core repulsion = 11838.789294 eV Total energy + Delta-G solvation = -2405.812381 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.57881 -38.78580 -36.68620 -35.20615 -31.88845 -31.32994 -29.55152 -28.24338 -25.93370 -22.93509 -21.98617 -21.15927 -19.48388 -17.82605 -17.28846 -16.84201 -16.28287 -16.01162 -15.33468 -14.96822 -14.81518 -14.33505 -13.66265 -13.32197 -13.08931 -13.04566 -12.69098 -12.60618 -12.31055 -11.94719 -11.81115 -11.65899 -11.19269 -10.70015 -9.85647 -8.75052 -8.38609 -8.04786 -5.93764 0.43627 0.93534 1.39475 1.43810 1.54240 2.25237 2.38677 2.73557 3.00673 3.38361 3.66734 4.24617 4.38689 4.59475 4.67530 4.73521 4.95914 5.09391 5.12829 5.21453 5.42754 5.53869 5.62291 5.75712 5.90078 5.93248 6.21921 6.50822 6.78032 7.10004 7.19938 7.22100 7.36457 8.69984 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.034455 B = 0.011549 C = 0.009031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.463073 B = 2423.911710 C = 3099.803133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 C -0.063 4.063 3 N -0.580 5.580 4 H 0.412 0.588 5 C 0.090 3.910 6 C -0.159 4.159 7 C -0.090 4.090 8 C -0.207 4.207 9 C 0.135 3.865 10 O -0.507 6.507 11 C -0.195 4.195 12 C 0.006 3.994 13 C -0.469 4.469 14 H 0.060 0.940 15 C 0.034 3.966 16 N -0.851 5.851 17 Si 0.964 3.036 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.268 1.268 21 H 0.055 0.945 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.141 0.859 25 H 0.160 0.840 26 H 0.139 0.861 27 H 0.393 0.607 28 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.388 4.946 4.140 7.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.169 4.169 3 N -0.184 5.184 4 H 0.249 0.751 5 C -0.021 4.021 6 C -0.180 4.180 7 C -0.110 4.110 8 C -0.227 4.227 9 C 0.090 3.910 10 O -0.318 6.318 11 C -0.202 4.202 12 C 0.001 3.999 13 C -0.503 4.503 14 H 0.078 0.922 15 C -0.175 4.175 16 N -0.482 5.482 17 Si 0.787 3.213 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.192 1.192 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.159 0.841 25 H 0.177 0.823 26 H 0.156 0.844 27 H 0.250 0.750 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.037 5.113 3.404 7.350 hybrid contribution -0.733 -0.651 0.319 1.031 sum 3.304 4.462 3.722 6.684 Atomic orbital electron populations 1.19781 0.88321 0.99495 1.00870 1.20737 0.93109 0.85214 1.17823 1.41013 1.03256 1.07723 1.66394 0.75144 1.18407 0.85619 0.93370 1.04705 1.20288 0.89298 0.99538 1.08887 1.20845 0.97242 0.93349 0.99514 1.21190 0.96780 0.94698 1.10067 1.18266 0.91026 0.82574 0.99131 1.84696 1.96177 1.17068 1.33880 1.20334 0.95078 0.94058 1.10748 1.18073 0.87819 0.93147 1.00905 1.18576 1.10948 0.93434 1.27303 0.92161 1.26242 0.96724 1.00841 0.93721 1.69995 1.25675 1.38419 1.14131 0.85485 0.78747 0.78761 0.78280 1.18999 1.20340 1.19210 0.92637 0.93641 0.92740 0.84110 0.82282 0.84356 0.74977 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.23 8.61 71.23 0.61 -0.61 15 2 C -0.06 -3.16 6.88 42.13 0.29 -2.87 15 3 N -0.58 -24.85 5.99 -173.33 -1.04 -25.89 15 4 H 0.41 14.06 8.96 -92.72 -0.83 13.23 15 5 C 0.09 3.95 7.23 38.87 0.28 4.23 15 6 C -0.16 -5.53 10.07 22.42 0.23 -5.30 15 7 C -0.09 -2.87 10.01 22.27 0.22 -2.65 15 8 C -0.21 -7.53 9.98 22.40 0.22 -7.30 15 9 C 0.13 6.11 6.73 22.66 0.15 6.26 15 10 O -0.51 -22.35 13.18 -91.55 -1.21 -23.56 15 11 C -0.20 -9.95 6.29 -19.97 -0.13 -10.08 15 12 C 0.01 0.34 5.65 -19.98 -0.11 0.22 15 13 C -0.47 -26.72 8.85 23.27 0.21 -26.51 15 14 H 0.06 3.40 7.91 -2.91 -0.02 3.38 15 15 C 0.03 1.81 4.22 85.16 0.36 2.17 15 16 N -0.85 -46.84 10.50 21.79 0.23 -46.61 15 17 Si 0.96 41.52 29.60 68.60 2.03 43.55 15 18 H -0.26 -10.91 7.11 99.48 0.71 -10.21 15 19 H -0.28 -11.61 7.11 99.48 0.71 -10.90 15 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 21 H 0.06 2.64 6.98 -2.39 -0.02 2.63 15 22 H 0.04 2.16 7.23 -2.38 -0.02 2.15 15 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.14 3.81 8.06 -2.91 -0.02 3.79 15 25 H 0.16 3.56 8.06 -2.91 -0.02 3.54 15 26 H 0.14 4.20 8.06 -2.91 -0.02 4.18 15 27 H 0.39 13.58 9.06 -74.06 -0.67 12.90 15 28 H 0.27 13.98 8.31 -92.71 -0.77 13.21 15 Total: -1.00 -67.83 245.87 2.05 -65.77 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -0.30 Total: 29.17 kcal Atomic # 6 Polarization: -44.77 SS G_CDS: 2.34 Total: -42.44 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -0.81 Total: -72.51 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -1.21 Total: -23.56 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -67.83 2.05 -65.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214446545.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.313 kcal (2) G-P(sol) polarization free energy of solvation -67.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds