Wall clock time and date at job start Mon Mar 30 2020 02:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34226 * 126.55875 * 2 1 4 4 N 1.36870 * 109.90743 * 180.02562 * 3 2 1 5 5 H 0.96995 * 125.00166 * 180.02562 * 4 3 2 6 6 C 1.37359 * 110.00536 * 359.97438 * 4 3 2 7 7 C 1.39942 * 133.01538 * 179.97438 * 6 4 3 8 8 C 1.35901 * 120.55629 * 180.02562 * 7 6 4 9 9 C 1.41111 * 120.64104 * 0.02562 * 8 7 6 10 10 C 1.41073 * 120.14450 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00298 * 205.53894 * 10 9 8 12 12 C 1.39816 * 119.99818 * 25.53827 * 10 9 8 13 13 N 1.30971 * 120.00013 * 26.49860 * 12 10 9 14 14 Si 1.86799 * 120.00159 * 206.50531 * 12 10 9 15 15 H 1.48495 * 109.47004 * 179.97438 * 14 12 10 16 16 H 1.48503 * 109.46867 * 299.99945 * 14 12 10 17 17 H 1.48493 * 109.46954 * 59.99559 * 14 12 10 18 18 C 1.41099 * 119.71953 * 0.22921 * 9 8 7 19 19 O 1.35525 * 120.42248 * 179.73073 * 18 9 8 20 20 C 1.39745 * 119.15249 * 359.49741 * 18 9 8 21 21 H 1.08998 * 109.47245 * 269.97947 * 1 2 3 22 22 H 1.09002 * 109.46989 * 29.97936 * 1 2 3 23 23 H 1.09000 * 109.46656 * 149.98031 * 1 2 3 24 24 H 1.07998 * 125.05137 * 0.02562 * 3 2 1 25 25 H 1.07997 * 119.72088 * 0.02562 * 7 6 4 26 26 H 1.08002 * 119.67602 * 180.02562 * 8 7 6 27 27 H 0.97003 * 120.00079 * 5.89427 * 13 12 10 28 28 H 0.96695 * 114.00383 * 89.99991 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3065 1.0782 0.0000 4 7 3.6178 0.6860 -0.0006 5 1 4.3785 1.2877 -0.0003 6 6 3.6982 -0.6853 -0.0004 7 6 4.7755 -1.5784 -0.0012 8 6 4.5604 -2.9203 -0.0013 9 6 3.2478 -3.4383 -0.0011 10 6 3.0367 -4.8332 -0.0017 11 1 2.1213 -5.2406 -0.4048 12 6 4.0125 -5.6881 0.5195 13 7 4.8384 -5.2556 1.4394 14 14 4.1384 -7.4472 -0.0961 15 1 5.2460 -8.1405 0.6094 16 1 2.8611 -8.1569 0.1688 17 1 4.4084 -7.4425 -1.5563 18 6 2.1474 -2.5553 -0.0057 19 8 0.8807 -3.0373 -0.0110 20 6 2.3802 -1.1774 0.0003 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3632 -0.8898 -0.5142 24 1 1.9658 2.1030 0.0004 25 1 5.7863 -1.1982 -0.0018 26 1 5.4024 -3.5968 -0.0015 27 1 4.7201 -4.3715 1.8205 28 1 0.5094 -3.1772 0.8708 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214446939.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:54 Heat of formation + Delta-G solvation = -6.206541 kcal Electronic energy + Delta-G solvation = -14113.526831 eV Core-core repulsion = 11708.245881 eV Total energy + Delta-G solvation = -2405.280950 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.11618 -37.00656 -35.11954 -33.06375 -31.69694 -28.63795 -28.11556 -25.66073 -24.48788 -21.36923 -20.67293 -18.81269 -17.57581 -17.34957 -15.93702 -14.84647 -14.35617 -13.83164 -13.74110 -13.55242 -12.90212 -12.56810 -12.19923 -12.16387 -11.79478 -11.52525 -11.13308 -11.03710 -10.39582 -10.22577 -10.07793 -9.65525 -9.17499 -8.76334 -8.29649 -7.26166 -7.20773 -6.57358 -4.24415 2.23821 2.84131 3.20071 3.31725 3.40901 3.57518 4.03256 4.07010 4.54222 5.34576 5.49652 5.75533 5.87065 5.99194 6.10543 6.24510 6.32396 6.55044 6.68424 6.84615 7.05856 7.18830 7.37475 7.59842 7.73881 7.84665 7.98274 8.15515 8.20752 8.45814 8.67155 8.89482 9.25929 10.08453 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.044905 B = 0.009319 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.395834 B = 3003.967888 C = 3512.587298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.192 4.192 3 C 0.025 3.975 4 N -0.600 5.600 5 H 0.401 0.599 6 C 0.001 3.999 7 C -0.112 4.112 8 C -0.151 4.151 9 C 0.065 3.935 10 C -0.512 4.512 11 H 0.081 0.919 12 C 0.038 3.962 13 N -0.804 5.804 14 Si 1.065 2.935 15 H -0.276 1.276 16 H -0.276 1.276 17 H -0.275 1.275 18 C -0.020 4.020 19 O -0.484 6.484 20 C -0.069 4.069 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.067 0.933 24 H 0.151 0.849 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.296 0.704 28 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.016 6.324 -0.511 6.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.202 4.202 3 C -0.102 4.102 4 N -0.204 5.204 5 H 0.235 0.765 6 C -0.103 4.103 7 C -0.133 4.133 8 C -0.171 4.171 9 C 0.061 3.939 10 C -0.540 4.540 11 H 0.099 0.901 12 C -0.183 4.183 13 N -0.428 5.428 14 Si 0.889 3.111 15 H -0.200 1.200 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.067 4.067 19 O -0.290 6.290 20 C -0.073 4.073 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.086 0.914 24 H 0.169 0.831 25 H 0.111 0.889 26 H 0.133 0.867 27 H 0.109 0.891 28 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.919 5.021 -0.955 5.193 hybrid contribution -0.495 1.863 0.443 1.978 sum -1.414 6.885 -0.512 7.047 Atomic orbital electron populations 1.19981 0.90752 1.01389 1.00397 1.20131 0.94572 0.91501 1.13953 1.21216 0.83086 0.97901 1.08015 1.41276 1.06284 1.05235 1.67561 0.76492 1.17751 0.95047 0.82262 1.15217 1.19430 0.94656 0.92615 1.06618 1.20726 0.97212 0.93242 1.05935 1.17753 0.90194 0.93642 0.92306 1.20328 1.05715 0.91168 1.36809 0.90123 1.27021 0.91397 1.06870 0.92983 1.70545 1.33833 1.21740 1.16687 0.83632 0.77357 0.72996 0.77096 1.20039 1.20130 1.20052 1.17591 0.83769 0.87415 1.17935 1.84723 1.27089 1.86481 1.30719 1.19070 0.91602 0.92324 1.04317 0.93276 0.93452 0.91449 0.83139 0.88871 0.86661 0.89139 0.80109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.25 36.01 0.37 -0.78 15 2 C -0.19 -3.91 6.32 -102.67 -0.65 -4.55 15 3 C 0.02 0.43 11.74 -16.72 -0.20 0.24 15 4 N -0.60 -10.91 6.05 -10.52 -0.06 -10.97 15 5 H 0.40 5.74 8.96 -40.82 -0.37 5.37 15 6 C 0.00 0.01 7.28 -83.83 -0.61 -0.60 15 7 C -0.11 -2.58 9.99 -39.78 -0.40 -2.98 15 8 C -0.15 -3.85 7.89 -39.33 -0.31 -4.16 15 9 C 0.06 1.75 5.30 -106.65 -0.57 1.19 15 10 C -0.51 -13.90 8.62 -37.92 -0.33 -14.22 15 11 H 0.08 2.22 7.72 -52.49 -0.41 1.81 15 12 C 0.04 0.96 4.89 -17.33 -0.08 0.88 15 13 N -0.80 -21.24 12.32 55.54 0.68 -20.56 15 14 Si 1.07 21.89 30.01 -169.99 -5.10 16.79 15 15 H -0.28 -5.58 7.11 56.52 0.40 -5.18 15 16 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 17 H -0.28 -5.50 7.11 56.52 0.40 -5.10 15 18 C -0.02 -0.52 6.78 -37.93 -0.26 -0.77 15 19 O -0.48 -11.69 11.87 -18.27 -0.22 -11.91 15 20 C -0.07 -1.66 6.29 -105.05 -0.66 -2.32 15 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.07 1.23 7.38 -51.93 -0.38 0.85 15 24 H 0.15 1.97 8.06 -52.49 -0.42 1.55 15 25 H 0.09 1.85 8.06 -52.49 -0.42 1.43 15 26 H 0.12 2.96 6.50 -52.49 -0.34 2.62 15 27 H 0.30 7.99 6.79 -40.82 -0.28 7.71 15 28 H 0.35 7.13 9.06 45.56 0.41 7.54 15 LS Contribution 245.72 15.07 3.70 3.70 Total: -1.00 -30.33 245.72 -6.53 -36.86 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -1.85 Total: 14.17 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -3.69 Total: -28.08 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.62 Total: -31.53 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.22 Total: -11.91 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.10 Total: 16.79 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.33 -6.53 -36.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214446939.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.654 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds