Wall clock time and date at job start Mon Mar 30 2020 02:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34226 * 126.55875 * 2 1 4 4 N 1.36870 * 109.90743 * 180.02562 * 3 2 1 5 5 H 0.96995 * 125.00166 * 180.02562 * 4 3 2 6 6 C 1.37359 * 110.00536 * 359.97438 * 4 3 2 7 7 C 1.39942 * 133.01538 * 179.97438 * 6 4 3 8 8 C 1.35901 * 120.55629 * 180.02562 * 7 6 4 9 9 C 1.41111 * 120.64104 * 0.02562 * 8 7 6 10 10 C 1.41073 * 120.14450 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00298 * 205.53894 * 10 9 8 12 12 C 1.39816 * 119.99818 * 25.53827 * 10 9 8 13 13 N 1.30971 * 120.00013 * 26.49860 * 12 10 9 14 14 Si 1.86799 * 120.00159 * 206.50531 * 12 10 9 15 15 H 1.48495 * 109.47004 * 179.97438 * 14 12 10 16 16 H 1.48503 * 109.46867 * 299.99945 * 14 12 10 17 17 H 1.48493 * 109.46954 * 59.99559 * 14 12 10 18 18 C 1.41099 * 119.71953 * 0.22921 * 9 8 7 19 19 O 1.35525 * 120.42248 * 179.73073 * 18 9 8 20 20 C 1.39745 * 119.15249 * 359.49741 * 18 9 8 21 21 H 1.08998 * 109.47245 * 269.97947 * 1 2 3 22 22 H 1.09002 * 109.46989 * 29.97936 * 1 2 3 23 23 H 1.09000 * 109.46656 * 149.98031 * 1 2 3 24 24 H 1.07998 * 125.05137 * 0.02562 * 3 2 1 25 25 H 1.07997 * 119.72088 * 0.02562 * 7 6 4 26 26 H 1.08002 * 119.67602 * 180.02562 * 8 7 6 27 27 H 0.97003 * 120.00079 * 5.89427 * 13 12 10 28 28 H 0.96695 * 114.00383 * 89.99991 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3065 1.0782 0.0000 4 7 3.6178 0.6860 -0.0006 5 1 4.3785 1.2877 -0.0003 6 6 3.6982 -0.6853 -0.0004 7 6 4.7755 -1.5784 -0.0012 8 6 4.5604 -2.9203 -0.0013 9 6 3.2478 -3.4383 -0.0011 10 6 3.0367 -4.8332 -0.0017 11 1 2.1213 -5.2406 -0.4048 12 6 4.0125 -5.6881 0.5195 13 7 4.8384 -5.2556 1.4394 14 14 4.1384 -7.4472 -0.0961 15 1 5.2460 -8.1405 0.6094 16 1 2.8611 -8.1569 0.1688 17 1 4.4084 -7.4425 -1.5563 18 6 2.1474 -2.5553 -0.0057 19 8 0.8807 -3.0373 -0.0110 20 6 2.3802 -1.1774 0.0003 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3632 -0.8898 -0.5142 24 1 1.9658 2.1030 0.0004 25 1 5.7863 -1.1982 -0.0018 26 1 5.4024 -3.5968 -0.0015 27 1 4.7201 -4.3715 1.8205 28 1 0.5094 -3.1772 0.8708 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214446939.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:53 Heat of formation + Delta-G solvation = -26.916430 kcal Electronic energy + Delta-G solvation = -14114.424879 eV Core-core repulsion = 11708.245881 eV Total energy + Delta-G solvation = -2406.178998 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.78029 -38.84720 -37.01435 -34.91377 -33.21912 -30.52139 -29.85123 -27.20894 -26.33310 -23.16256 -22.49809 -20.51518 -19.41353 -19.02845 -17.65846 -16.65201 -16.20806 -15.51185 -15.41781 -15.28666 -14.68863 -14.21791 -13.84118 -13.58798 -13.42088 -13.26388 -12.75203 -12.67587 -12.03268 -11.96597 -11.84400 -11.49440 -11.03247 -10.66121 -10.02119 -9.23339 -9.05394 -8.27282 -6.25503 0.46777 0.99491 1.51632 1.65524 1.81675 1.98506 2.35104 2.55718 2.66038 3.42002 3.93734 4.11037 4.28383 4.43601 4.63961 4.67472 4.90680 5.00525 5.11662 5.18465 5.33676 5.41508 5.66688 5.70678 5.79194 6.02363 6.13586 6.21803 6.43021 6.70917 6.93064 7.04994 7.38440 8.07212 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.044905 B = 0.009319 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.395834 B = 3003.967888 C = 3512.587298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.229 4.229 3 C 0.061 3.939 4 N -0.585 5.585 5 H 0.423 0.577 6 C -0.006 4.006 7 C -0.107 4.107 8 C -0.175 4.175 9 C 0.033 3.967 10 C -0.549 4.549 11 H 0.063 0.937 12 C 0.006 3.994 13 N -0.821 5.821 14 Si 1.116 2.884 15 H -0.268 1.268 16 H -0.262 1.262 17 H -0.267 1.267 18 C -0.041 4.041 19 O -0.492 6.492 20 C -0.100 4.100 21 H 0.059 0.941 22 H 0.080 0.920 23 H 0.043 0.957 24 H 0.210 0.790 25 H 0.125 0.875 26 H 0.103 0.897 27 H 0.281 0.719 28 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 8.721 -0.770 9.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.237 4.237 3 C -0.067 4.067 4 N -0.190 5.190 5 H 0.262 0.738 6 C -0.111 4.111 7 C -0.127 4.127 8 C -0.194 4.194 9 C 0.029 3.971 10 C -0.578 4.578 11 H 0.081 0.919 12 C -0.209 4.209 13 N -0.445 5.445 14 Si 0.933 3.067 15 H -0.192 1.192 16 H -0.186 1.186 17 H -0.192 1.192 18 C -0.088 4.088 19 O -0.299 6.299 20 C -0.105 4.105 21 H 0.078 0.922 22 H 0.099 0.901 23 H 0.062 0.938 24 H 0.226 0.774 25 H 0.143 0.857 26 H 0.121 0.879 27 H 0.092 0.908 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.055 7.466 -1.208 7.637 hybrid contribution -0.531 1.422 0.519 1.604 sum -1.586 8.888 -0.689 9.055 Atomic orbital electron populations 1.19966 0.88812 1.01889 1.01238 1.20579 0.96333 0.90705 1.16107 1.22051 0.81809 0.99686 1.03149 1.41326 1.07873 1.03688 1.66106 0.73822 1.17889 0.94355 0.84430 1.14422 1.19681 0.96499 0.91815 1.04727 1.20651 0.96226 0.94396 1.08166 1.18112 0.91469 0.94159 0.93314 1.20377 1.06172 0.92048 1.39157 0.91888 1.28336 0.90385 1.10155 0.92012 1.70652 1.34872 1.21119 1.17875 0.83014 0.78114 0.68594 0.76934 1.19250 1.18604 1.19203 1.17939 0.83834 0.88692 1.18316 1.84643 1.26736 1.86656 1.31894 1.19567 0.93811 0.92705 1.04415 0.92248 0.90072 0.93806 0.77358 0.85738 0.87929 0.90762 0.78669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.93 10.25 71.24 0.73 -1.20 15 2 C -0.23 -8.65 6.32 -18.60 -0.12 -8.76 15 3 C 0.06 1.80 11.74 82.99 0.97 2.78 15 4 N -0.58 -18.78 6.05 -187.18 -1.13 -19.91 15 5 H 0.42 9.98 8.96 -92.71 -0.83 9.15 15 6 C -0.01 -0.27 7.28 39.29 0.29 0.01 15 7 C -0.11 -4.85 9.99 22.14 0.22 -4.63 15 8 C -0.17 -9.18 7.89 22.43 0.18 -9.00 15 9 C 0.03 1.86 5.30 -21.18 -0.11 1.75 15 10 C -0.55 -31.39 8.62 23.35 0.20 -31.19 15 11 H 0.06 3.68 7.72 -2.91 -0.02 3.66 15 12 C 0.01 0.32 4.89 85.20 0.42 0.74 15 13 N -0.82 -45.09 12.32 21.81 0.27 -44.82 15 14 Si 1.12 45.10 30.01 68.60 2.06 47.16 15 15 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 16 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 17 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 18 C -0.04 -2.20 6.78 23.34 0.16 -2.04 15 19 O -0.49 -24.70 11.87 -88.29 -1.05 -25.75 15 20 C -0.10 -4.78 6.29 -20.14 -0.13 -4.91 15 21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 15 22 H 0.08 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.04 1.55 7.38 -2.39 -0.02 1.54 15 24 H 0.21 3.80 8.06 -2.91 -0.02 3.78 15 25 H 0.12 4.72 8.06 -2.91 -0.02 4.70 15 26 H 0.10 5.53 6.50 -2.91 -0.02 5.51 15 27 H 0.28 15.98 6.79 -92.71 -0.63 15.35 15 28 H 0.36 15.51 9.06 -74.06 -0.67 14.84 15 Total: -1.00 -68.94 245.72 2.80 -66.14 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -0.16 Total: 33.63 kcal Atomic # 6 Polarization: -59.25 SS G_CDS: 2.81 Total: -56.44 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.86 Total: -64.73 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -1.05 Total: -25.75 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.06 Total: 47.16 kcal Total: -68.94 2.80 -66.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214446939.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.220 kcal (2) G-P(sol) polarization free energy of solvation -68.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds