Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.47305 * 2 1 4 4 C 1.51194 * 110.64814 * 122.73379 * 2 1 3 5 5 C 1.35935 * 132.70213 * 298.70353 * 4 2 1 6 6 C 1.40977 * 119.71474 * 179.97438 * 5 4 2 7 7 C 1.41146 * 120.33322 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00256 * 335.05708 * 7 6 5 9 9 C 1.39906 * 119.99903 * 155.06273 * 7 6 5 10 10 N 1.30871 * 120.00022 * 342.48665 * 9 7 6 11 11 Si 1.86803 * 119.99884 * 162.48356 * 9 7 6 12 12 H 1.48497 * 109.47168 * 89.99981 * 11 9 7 13 13 H 1.48497 * 109.46964 * 210.00212 * 11 9 7 14 14 H 1.48498 * 109.47169 * 329.99878 * 11 9 7 15 15 C 1.40886 * 119.32902 * 359.97438 * 6 5 4 16 16 C 1.36164 * 120.12885 * 0.02562 * 15 6 5 17 17 C 1.39572 * 106.22900 * 118.68200 * 4 2 1 18 18 N 1.38918 * 110.15513 * 359.97438 * 17 4 2 19 19 C 1.34310 * 112.45161 * 0.02562 * 18 17 4 20 20 O 1.21283 * 126.40874 * 179.97438 * 19 18 17 21 21 H 1.08999 * 109.47081 * 179.29166 * 1 2 3 22 22 H 1.08999 * 109.46768 * 299.29565 * 1 2 3 23 23 H 1.08997 * 109.47129 * 59.29239 * 1 2 3 24 24 H 1.08002 * 120.14112 * 359.95158 * 5 4 2 25 25 H 0.97000 * 119.99874 * 179.97438 * 10 9 7 26 26 H 1.07998 * 119.93099 * 179.97438 * 15 6 5 27 27 H 1.08005 * 119.77434 * 179.97438 * 16 15 6 28 28 H 0.97000 * 123.77794 * 180.02562 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9113 1.0212 0.0000 4 6 2.0632 -0.7650 1.1901 5 6 1.9393 -0.5859 2.5319 6 6 2.5656 -1.4861 3.4178 7 6 2.4461 -1.3122 4.8134 8 1 2.2456 -0.3320 5.2203 9 6 2.5873 -2.4095 5.6697 10 7 2.4870 -3.6257 5.1969 11 14 2.9192 -2.1387 7.4880 12 1 1.6295 -2.0500 8.2187 13 1 3.7130 -3.2750 8.0209 14 1 3.6790 -0.8758 7.6698 15 6 3.3121 -2.5610 2.8961 16 6 3.4251 -2.7244 1.5490 17 6 2.8026 -1.8287 0.6707 18 7 2.7778 -1.7959 -0.7179 19 6 2.0605 -0.7650 -1.1939 20 8 1.8730 -0.4968 -2.3617 21 1 -0.3633 -1.0276 -0.0127 22 1 -0.3633 0.5029 0.8962 23 1 -0.3633 0.5248 -0.8835 24 1 1.3638 0.2426 2.9176 25 1 2.5853 -4.3865 5.7906 26 1 3.7963 -3.2562 3.5659 27 1 3.9991 -3.5502 1.1552 28 1 3.2282 -2.4449 -1.2808 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214448353.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = -20.077256 kcal Electronic energy + Delta-G solvation = -13911.704142 eV Core-core repulsion = 11505.821713 eV Total energy + Delta-G solvation = -2405.882429 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.50443 -37.41303 -35.24090 -33.06938 -32.73097 -29.41562 -28.25762 -25.00685 -24.63366 -21.07413 -20.36441 -19.77287 -17.41002 -16.75204 -15.67085 -15.35023 -15.12531 -14.20110 -13.74049 -13.13587 -12.98286 -12.66812 -12.17635 -12.01142 -11.70279 -11.48804 -11.28095 -11.17811 -11.05708 -10.72954 -10.15118 -9.79477 -9.50373 -9.30921 -9.06240 -7.71086 -7.06924 -6.88004 -4.40823 2.34648 2.79633 2.93200 3.00791 3.05768 3.35747 3.83270 3.91613 4.48189 4.95621 5.21108 5.45358 5.71392 5.74805 5.99569 6.13934 6.20784 6.44132 6.50562 6.68988 6.89406 7.01778 7.22582 7.31782 7.41662 7.76267 7.85778 7.91733 8.06041 8.43633 8.72126 8.72552 8.80802 10.04190 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.059378 B = 0.007568 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.441076 B = 3698.985812 C = 4011.422679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.083 4.083 3 H 0.107 0.893 4 C -0.093 4.093 5 C -0.181 4.181 6 C 0.105 3.895 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.075 3.925 10 N -0.790 5.790 11 Si 0.909 3.091 12 H -0.269 1.269 13 H -0.275 1.275 14 H -0.260 1.260 15 C -0.143 4.143 16 C -0.099 4.099 17 C -0.020 4.020 18 N -0.641 5.641 19 C 0.519 3.481 20 O -0.547 6.547 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.099 0.901 25 H 0.283 0.717 26 H 0.126 0.874 27 H 0.092 0.908 28 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.066 1.695 -1.244 2.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.104 4.104 3 H 0.125 0.875 4 C -0.095 4.095 5 C -0.201 4.201 6 C 0.102 3.898 7 C -0.482 4.482 8 H 0.099 0.901 9 C -0.143 4.143 10 N -0.415 5.415 11 Si 0.733 3.267 12 H -0.194 1.194 13 H -0.200 1.200 14 H -0.183 1.183 15 C -0.163 4.163 16 C -0.120 4.120 17 C -0.114 4.114 18 N -0.282 5.282 19 C 0.307 3.693 20 O -0.427 6.427 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.118 0.882 25 H 0.094 0.906 26 H 0.144 0.856 27 H 0.110 0.890 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.103 1.673 -1.734 2.412 hybrid contribution 0.420 -0.478 0.613 0.883 sum 0.317 1.195 -1.121 1.669 Atomic orbital electron populations 1.21458 0.91882 1.02451 1.02045 1.20557 0.97721 0.99955 0.92162 0.87526 1.19093 1.00730 0.96352 0.93348 1.19890 1.06136 1.03898 0.90144 1.17546 0.88726 0.90557 0.92984 1.19514 1.42427 0.95439 0.90865 0.90109 1.25930 0.92194 0.94523 1.01681 1.69819 1.34202 0.99326 1.38175 0.86286 0.79436 0.79381 0.81551 1.19413 1.20038 1.18349 1.20855 1.01692 1.01310 0.92449 1.19777 1.01461 0.97667 0.93099 1.17684 1.10553 1.02258 0.80934 1.43190 1.49867 1.28418 1.06753 1.20541 0.78070 0.81283 0.89373 1.90683 1.61781 1.71611 1.18595 0.92440 0.91358 0.92297 0.88238 0.90634 0.85633 0.88980 0.76696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 9.30 37.16 0.35 -1.61 15 2 C -0.08 -1.53 3.59 -92.34 -0.33 -1.86 15 3 H 0.11 1.80 8.14 -51.93 -0.42 1.38 15 4 C -0.09 -1.97 5.62 -104.71 -0.59 -2.56 15 5 C -0.18 -4.08 9.74 -39.37 -0.38 -4.46 15 6 C 0.10 2.58 5.57 -106.75 -0.60 1.98 15 7 C -0.45 -11.12 9.05 -37.85 -0.34 -11.46 15 8 H 0.08 1.89 7.90 -52.49 -0.41 1.48 15 9 C 0.08 1.75 5.14 -17.34 -0.09 1.66 15 10 N -0.79 -19.05 10.97 55.55 0.61 -18.45 15 11 Si 0.91 17.43 29.59 -169.99 -5.03 12.40 15 12 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 13 H -0.28 -5.19 7.11 56.52 0.40 -4.78 15 14 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 15 C -0.14 -3.43 8.63 -39.33 -0.34 -3.76 15 16 C -0.10 -2.16 10.01 -39.65 -0.40 -2.55 15 17 C -0.02 -0.43 7.12 -83.47 -0.59 -1.02 15 18 N -0.64 -12.14 5.84 -9.53 -0.06 -12.20 15 19 C 0.52 10.24 8.03 -10.85 -0.09 10.16 15 20 O -0.55 -11.81 18.03 5.56 0.10 -11.71 15 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15 24 H 0.10 2.09 8.06 -52.49 -0.42 1.67 15 25 H 0.28 6.20 8.30 -40.82 -0.34 5.86 15 26 H 0.13 3.08 6.18 -52.49 -0.32 2.76 15 27 H 0.09 1.77 8.06 -52.48 -0.42 1.34 15 28 H 0.40 6.49 8.96 -40.82 -0.37 6.13 15 LS Contribution 247.58 15.07 3.73 3.73 Total: -1.00 -26.73 247.58 -6.82 -33.56 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -2.78 Total: 8.15 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -3.40 Total: -15.48 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: 0.55 Total: -30.64 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.10 Total: -11.71 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -26.73 -6.82 -33.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214448353.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.480 kcal (2) G-P(sol) polarization free energy of solvation -26.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds