Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.47305 * 2 1 4 4 C 1.51194 * 110.64814 * 122.73379 * 2 1 3 5 5 C 1.35935 * 132.70213 * 298.70353 * 4 2 1 6 6 C 1.40977 * 119.71474 * 179.97438 * 5 4 2 7 7 C 1.41146 * 120.33322 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00256 * 335.05708 * 7 6 5 9 9 C 1.39906 * 119.99903 * 155.06273 * 7 6 5 10 10 N 1.30871 * 120.00022 * 342.48665 * 9 7 6 11 11 Si 1.86803 * 119.99884 * 162.48356 * 9 7 6 12 12 H 1.48497 * 109.47168 * 89.99981 * 11 9 7 13 13 H 1.48497 * 109.46964 * 210.00212 * 11 9 7 14 14 H 1.48498 * 109.47169 * 329.99878 * 11 9 7 15 15 C 1.40886 * 119.32902 * 359.97438 * 6 5 4 16 16 C 1.36164 * 120.12885 * 0.02562 * 15 6 5 17 17 C 1.39572 * 106.22900 * 118.68200 * 4 2 1 18 18 N 1.38918 * 110.15513 * 359.97438 * 17 4 2 19 19 C 1.34310 * 112.45161 * 0.02562 * 18 17 4 20 20 O 1.21283 * 126.40874 * 179.97438 * 19 18 17 21 21 H 1.08999 * 109.47081 * 179.29166 * 1 2 3 22 22 H 1.08999 * 109.46768 * 299.29565 * 1 2 3 23 23 H 1.08997 * 109.47129 * 59.29239 * 1 2 3 24 24 H 1.08002 * 120.14112 * 359.95158 * 5 4 2 25 25 H 0.97000 * 119.99874 * 179.97438 * 10 9 7 26 26 H 1.07998 * 119.93099 * 179.97438 * 15 6 5 27 27 H 1.08005 * 119.77434 * 179.97438 * 16 15 6 28 28 H 0.97000 * 123.77794 * 180.02562 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9113 1.0212 0.0000 4 6 2.0632 -0.7650 1.1901 5 6 1.9393 -0.5859 2.5319 6 6 2.5656 -1.4861 3.4178 7 6 2.4461 -1.3122 4.8134 8 1 2.2456 -0.3320 5.2203 9 6 2.5873 -2.4095 5.6697 10 7 2.4870 -3.6257 5.1969 11 14 2.9192 -2.1387 7.4880 12 1 1.6295 -2.0500 8.2187 13 1 3.7130 -3.2750 8.0209 14 1 3.6790 -0.8758 7.6698 15 6 3.3121 -2.5610 2.8961 16 6 3.4251 -2.7244 1.5490 17 6 2.8026 -1.8287 0.6707 18 7 2.7778 -1.7959 -0.7179 19 6 2.0605 -0.7650 -1.1939 20 8 1.8730 -0.4968 -2.3617 21 1 -0.3633 -1.0276 -0.0127 22 1 -0.3633 0.5029 0.8962 23 1 -0.3633 0.5248 -0.8835 24 1 1.3638 0.2426 2.9176 25 1 2.5853 -4.3865 5.7906 26 1 3.7963 -3.2562 3.5659 27 1 3.9991 -3.5502 1.1552 28 1 3.2282 -2.4449 -1.2808 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214448353.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = -35.318817 kcal Electronic energy + Delta-G solvation = -13912.365066 eV Core-core repulsion = 11505.821713 eV Total energy + Delta-G solvation = -2406.543353 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.12200 -39.10779 -36.93625 -34.77955 -34.26765 -31.14144 -29.91424 -26.74736 -26.14279 -22.79747 -22.08052 -21.31098 -19.14498 -18.39617 -17.32854 -17.06818 -16.67768 -15.78931 -15.31734 -14.82098 -14.55255 -14.31014 -13.84573 -13.50656 -13.30871 -13.01780 -12.87822 -12.73215 -12.62861 -12.28720 -11.78529 -11.48821 -11.18153 -10.92093 -10.78734 -9.44519 -8.81543 -8.60818 -6.22997 0.66538 1.04770 1.39841 1.45063 1.57087 1.74045 2.23829 2.36750 2.74354 3.40043 3.62927 3.73603 4.23683 4.33508 4.39079 4.78038 4.84950 4.89021 4.96334 5.15764 5.21659 5.29658 5.51898 5.60075 5.71551 6.04560 6.10083 6.18758 6.31899 6.64740 6.92922 6.98760 7.20981 8.33250 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.059378 B = 0.007568 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.441076 B = 3698.985812 C = 4011.422679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.081 4.081 3 H 0.127 0.873 4 C -0.096 4.096 5 C -0.188 4.188 6 C 0.076 3.924 7 C -0.486 4.486 8 H 0.081 0.919 9 C 0.038 3.962 10 N -0.821 5.821 11 Si 0.979 3.021 12 H -0.264 1.264 13 H -0.269 1.269 14 H -0.258 1.258 15 C -0.164 4.164 16 C -0.100 4.100 17 C -0.019 4.019 18 N -0.634 5.634 19 C 0.520 3.480 20 O -0.564 6.564 21 H 0.046 0.954 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.110 0.890 25 H 0.289 0.711 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 2.247 -1.363 2.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.101 4.101 3 H 0.145 0.855 4 C -0.099 4.099 5 C -0.208 4.208 6 C 0.073 3.927 7 C -0.516 4.516 8 H 0.100 0.900 9 C -0.178 4.178 10 N -0.447 5.447 11 Si 0.800 3.200 12 H -0.189 1.189 13 H -0.193 1.193 14 H -0.182 1.182 15 C -0.184 4.184 16 C -0.121 4.121 17 C -0.113 4.113 18 N -0.276 5.276 19 C 0.309 3.691 20 O -0.445 6.445 21 H 0.065 0.935 22 H 0.100 0.900 23 H 0.095 0.905 24 H 0.128 0.872 25 H 0.100 0.900 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.282 2.217 -1.877 2.919 hybrid contribution 0.473 -0.650 0.519 0.957 sum 0.192 1.567 -1.358 2.082 Atomic orbital electron populations 1.21464 0.90038 1.02275 1.03641 1.20662 0.99192 1.00358 0.89924 0.85508 1.19362 1.00235 0.96633 0.93634 1.20019 1.06190 1.03950 0.90675 1.17892 0.89511 0.91504 0.93749 1.19771 1.44235 0.96030 0.91518 0.90045 1.26701 0.91356 0.93934 1.05770 1.69864 1.34837 1.00136 1.39883 0.85235 0.79324 0.79278 0.76127 1.18876 1.19342 1.18211 1.20814 1.02715 1.01609 0.93276 1.19947 1.01339 0.98329 0.92483 1.17794 1.09783 1.01897 0.81851 1.43106 1.49772 1.28724 1.05952 1.20708 0.77751 0.81278 0.89373 1.90683 1.62420 1.72043 1.19318 0.93503 0.90001 0.90515 0.87206 0.89992 0.87001 0.86710 0.75219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.47 9.30 71.98 0.67 -2.80 15 2 C -0.08 -2.77 3.59 -11.91 -0.04 -2.82 15 3 H 0.13 3.90 8.14 -2.38 -0.02 3.88 15 4 C -0.10 -3.94 5.62 -19.92 -0.11 -4.05 15 5 C -0.19 -8.43 9.74 22.41 0.22 -8.22 15 6 C 0.08 3.80 5.57 -21.25 -0.12 3.68 15 7 C -0.49 -24.20 9.05 23.39 0.21 -23.99 15 8 H 0.08 3.87 7.90 -2.91 -0.02 3.85 15 9 C 0.04 1.78 5.14 85.24 0.44 2.22 15 10 N -0.82 -40.14 10.97 21.82 0.24 -39.90 15 11 Si 0.98 35.61 29.59 68.60 2.03 37.64 15 12 H -0.26 -9.32 7.11 99.48 0.71 -8.61 15 13 H -0.27 -9.39 7.11 99.48 0.71 -8.68 15 14 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 15 C -0.16 -7.96 8.63 22.44 0.19 -7.76 15 16 C -0.10 -4.30 10.01 22.23 0.22 -4.08 15 17 C -0.02 -0.76 7.12 38.78 0.28 -0.48 15 18 N -0.63 -22.72 5.84 -302.72 -1.77 -24.49 15 19 C 0.52 19.32 8.03 87.95 0.71 20.03 15 20 O -0.56 -23.05 18.03 -3.04 -0.05 -23.10 15 21 H 0.05 1.48 8.14 -2.39 -0.02 1.46 15 22 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 23 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 24 H 0.11 4.55 8.06 -2.91 -0.02 4.53 15 25 H 0.29 12.79 8.30 -92.71 -0.77 12.02 15 26 H 0.11 5.65 6.18 -2.91 -0.02 5.64 15 27 H 0.11 4.27 8.06 -2.91 -0.02 4.24 15 28 H 0.41 12.53 8.96 -92.71 -0.83 11.70 15 Total: -1.00 -55.90 247.58 3.47 -52.43 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.35 Total: 25.70 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 2.66 Total: -28.28 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -1.53 Total: -64.39 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.05 Total: -23.10 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -55.90 3.47 -52.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214448353.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.112 kcal (2) G-P(sol) polarization free energy of solvation -55.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds