Wall clock time and date at job start Mon Mar 30 2020 02:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29907 * 124.85508 * 2 1 4 4 C 1.36062 * 108.79461 * 180.02562 * 3 2 1 5 5 C 1.39590 * 133.79973 * 179.29669 * 4 3 2 6 6 C 1.37690 * 119.72758 * 180.02562 * 5 4 3 7 7 C 1.38714 * 120.42108 * 359.97438 * 6 5 4 8 8 C 1.37911 * 120.47593 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.06204 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46817 * 264.99878 * 9 8 7 11 11 H 1.08003 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00270 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99835 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00390 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46946 * 59.99892 * 14 12 10 16 16 H 1.48496 * 109.46933 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46921 * 299.99575 * 14 12 10 18 18 C 1.38675 * 119.87645 * 0.23020 * 8 7 6 19 19 O 1.34230 * 124.85494 * 179.36873 * 2 1 3 20 20 H 1.08994 * 109.47634 * 270.62851 * 1 2 3 21 21 H 1.08999 * 109.46654 * 30.63048 * 1 2 3 22 22 H 1.09001 * 109.46912 * 150.62181 * 1 2 3 23 23 H 1.07997 * 120.13875 * 359.97438 * 5 4 3 24 24 H 1.07997 * 119.78837 * 180.02562 * 6 5 4 25 25 H 1.07997 * 119.76326 * 180.02562 * 7 6 5 26 26 H 1.09000 * 109.47318 * 24.99258 * 9 8 7 27 27 H 1.09000 * 109.47161 * 144.99888 * 9 8 7 28 28 H 0.96992 * 120.00038 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2494 1.0660 0.0000 4 6 3.5570 0.6896 -0.0006 5 6 4.7641 1.3904 -0.0132 6 6 5.9550 0.6992 -0.0102 7 6 5.9620 -0.6878 0.0057 8 6 4.7770 -1.3932 0.0183 9 6 4.7955 -2.9000 0.0351 10 6 4.6721 -3.4195 -1.3742 11 1 4.5883 -2.7277 -2.1993 12 6 4.6653 -4.7779 -1.6101 13 7 4.7669 -5.6203 -0.6052 14 14 4.5131 -5.4219 -3.3570 15 1 5.6513 -4.9224 -4.1695 16 1 4.5312 -6.9066 -3.3405 17 1 3.2364 -4.9485 -3.9495 18 6 3.5683 -0.7133 0.0102 19 8 2.2741 -1.1014 0.0121 20 1 -0.3634 0.0113 1.0275 21 1 -0.3632 0.8843 -0.5236 22 1 -0.3633 -0.8955 -0.5042 23 1 4.7641 2.4703 -0.0261 24 1 6.8895 1.2405 -0.0196 25 1 6.9022 -1.2192 0.0083 26 1 5.7330 -3.2471 0.4694 27 1 3.9606 -3.2670 0.6320 28 1 4.7617 -6.5760 -0.7711 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221118642.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:54 Heat of formation + Delta-G solvation = -0.125996 kcal Electronic energy + Delta-G solvation = -13871.467950 eV Core-core repulsion = 11466.450672 eV Total energy + Delta-G solvation = -2405.017278 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.16191 -39.14332 -36.22037 -35.12193 -32.88980 -32.42787 -29.02816 -28.81501 -25.37583 -23.96764 -22.83002 -21.63555 -18.95753 -18.64630 -17.83771 -17.71250 -16.65218 -16.34145 -15.09316 -14.60408 -14.56775 -14.50037 -13.95488 -13.53823 -13.46334 -13.36550 -13.08581 -12.86673 -12.58858 -12.44165 -12.17196 -11.97388 -11.50729 -11.25486 -10.66499 -9.61745 -9.23275 -8.26042 -6.40660 -0.19950 0.33729 1.35164 1.38622 1.44596 1.48371 1.69233 2.35147 2.75423 2.91258 3.04284 3.60170 4.02282 4.21921 4.27799 4.35665 4.43661 4.60783 4.69038 4.83132 5.01487 5.08980 5.17658 5.27347 5.41349 5.43715 5.64696 5.73858 5.81935 6.07375 6.62862 6.69132 7.27795 8.83241 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.027752 B = 0.009615 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.676313 B = 2911.338190 C = 3529.686319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.232 3.768 3 N -0.506 5.506 4 C 0.003 3.997 5 C -0.092 4.092 6 C -0.095 4.095 7 C -0.111 4.111 8 C -0.046 4.046 9 C 0.061 3.939 10 C -0.533 4.533 11 H 0.048 0.952 12 C 0.009 3.991 13 N -0.927 5.927 14 Si 0.966 3.034 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.272 1.272 18 C -0.022 4.022 19 O -0.232 6.232 20 H 0.119 0.881 21 H 0.124 0.876 22 H 0.103 0.897 23 H 0.160 0.840 24 H 0.180 0.820 25 H 0.148 0.852 26 H 0.020 0.980 27 H -0.007 1.007 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.548 11.957 0.601 12.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.022 3.978 3 N -0.238 5.238 4 C -0.108 4.108 5 C -0.110 4.110 6 C -0.114 4.114 7 C -0.129 4.129 8 C -0.047 4.047 9 C 0.024 3.976 10 C -0.571 4.571 11 H 0.066 0.934 12 C -0.190 4.190 13 N -0.566 5.566 14 Si 0.790 3.210 15 H -0.188 1.188 16 H -0.200 1.200 17 H -0.198 1.198 18 C -0.071 4.071 19 O -0.124 6.124 20 H 0.137 0.863 21 H 0.142 0.858 22 H 0.121 0.879 23 H 0.177 0.823 24 H 0.197 0.803 25 H 0.165 0.835 26 H 0.039 0.961 27 H 0.011 0.989 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.760 12.371 0.655 12.946 hybrid contribution 0.091 -1.604 -0.593 1.712 sum -3.669 10.767 0.062 11.375 Atomic orbital electron populations 1.20708 0.77236 1.06850 1.06781 1.27693 0.98614 0.77779 0.93736 1.70557 1.00879 1.29480 1.22869 1.20312 0.93381 0.90838 1.06304 1.20558 0.87930 1.00993 1.01568 1.21421 0.98907 0.92868 0.98155 1.21200 0.96346 0.94967 1.00359 1.19536 0.89166 0.97443 0.98563 1.18035 0.96273 0.86614 0.96664 1.21227 1.51409 0.92014 0.92427 0.93366 1.25909 0.94263 0.96926 1.01897 1.70062 1.50518 1.03017 1.33026 0.85487 0.79132 0.77368 0.79029 1.18791 1.19986 1.19767 1.20446 0.83722 0.94853 1.08076 1.84523 1.16206 1.37319 1.74377 0.86266 0.85806 0.87874 0.82269 0.80296 0.83450 0.96129 0.98865 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.21 10.51 71.24 0.75 -0.46 15 2 C 0.23 8.22 8.24 88.39 0.73 8.95 15 3 N -0.51 -19.08 11.34 -296.27 -3.36 -22.44 15 4 C 0.00 0.10 7.24 39.32 0.28 0.39 15 5 C -0.09 -2.92 10.10 22.47 0.23 -2.70 15 6 C -0.09 -2.77 10.02 22.25 0.22 -2.55 15 7 C -0.11 -4.14 9.66 22.31 0.22 -3.93 15 8 C -0.05 -2.18 5.07 -19.84 -0.10 -2.28 15 9 C 0.06 3.42 5.11 29.10 0.15 3.57 15 10 C -0.53 -31.56 9.09 25.60 0.23 -31.33 15 11 H 0.05 2.85 7.74 -2.91 -0.02 2.82 15 12 C 0.01 0.51 5.46 84.65 0.46 0.97 15 13 N -0.93 -56.47 13.29 21.45 0.28 -56.18 15 14 Si 0.97 44.88 29.54 68.60 2.03 46.90 15 15 H -0.26 -11.66 7.11 99.48 0.71 -10.96 15 16 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 18 C -0.02 -1.01 7.11 22.88 0.16 -0.85 15 19 O -0.23 -10.56 10.77 -9.89 -0.11 -10.66 15 20 H 0.12 1.87 8.14 -2.39 -0.02 1.85 15 21 H 0.12 1.95 8.14 -2.39 -0.02 1.93 15 22 H 0.10 1.90 8.14 -2.39 -0.02 1.88 15 23 H 0.16 3.93 8.06 -2.91 -0.02 3.90 15 24 H 0.18 3.41 8.06 -2.91 -0.02 3.38 15 25 H 0.15 5.01 8.06 -2.91 -0.02 4.99 15 26 H 0.02 1.16 8.05 -2.39 -0.02 1.14 15 27 H -0.01 -0.43 8.12 -2.39 -0.02 -0.45 15 28 H 0.27 15.23 8.31 -92.71 -0.77 14.46 15 Total: -1.00 -74.19 254.68 3.34 -70.85 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: 1.16 Total: 1.74 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 3.33 Total: -30.21 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -3.07 Total: -78.62 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.11 Total: -10.66 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -74.19 3.34 -70.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221118642.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.721 kcal (2) G-P(sol) polarization free energy of solvation -74.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds