Wall clock time and date at job start Mon Mar 30 2020 02:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.47201 * 109.47379 * 2 1 4 4 N 2.60802 * 109.47178 * 0.02562 * 2 1 3 5 5 C 1.50701 * 109.46978 * 119.99561 * 2 1 3 6 6 H 1.08004 * 119.99642 * 115.31121 * 5 2 1 7 7 C 1.37869 * 120.00452 * 295.32166 * 5 2 1 8 8 N 1.31518 * 119.99829 * 359.97438 * 7 5 2 9 9 Si 1.86802 * 120.00447 * 179.97438 * 7 5 2 10 10 H 1.48500 * 109.46557 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47123 * 119.99232 * 9 7 5 12 12 H 1.48494 * 109.47332 * 239.99647 * 9 7 5 13 13 C 1.50695 * 109.47429 * 240.00057 * 2 1 3 14 14 C 1.38273 * 119.94263 * 294.91638 * 13 2 1 15 15 C 1.38143 * 120.05514 * 180.29432 * 14 13 2 16 16 C 1.38733 * 119.94291 * 359.43507 * 15 14 13 17 17 O 1.35906 * 120.05581 * 180.29286 * 16 15 14 18 18 C 1.38728 * 119.89007 * 0.26815 * 16 15 14 19 19 C 1.38146 * 119.94401 * 0.02562 * 18 16 15 20 20 H 1.08998 * 109.46712 * 179.97438 * 1 2 3 21 21 H 1.08990 * 109.47139 * 300.00399 * 1 2 3 22 22 H 1.09000 * 109.46453 * 59.99963 * 1 2 3 23 23 H 0.97002 * 119.99663 * 180.02562 * 8 7 5 24 24 H 1.07996 * 119.97213 * 0.03175 * 14 13 2 25 25 H 1.08002 * 120.02875 * 179.70037 * 15 14 13 26 26 H 0.96697 * 113.99805 * 89.99545 * 17 16 15 27 27 H 1.07998 * 120.03150 * 180.02562 * 18 16 15 28 28 H 1.08003 * 119.97320 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0208 1.3878 0.0000 4 7 2.3994 2.4589 0.0011 5 6 2.0323 -0.7103 1.2305 6 1 2.5893 -1.6305 1.1333 7 6 1.7807 -0.1857 2.4804 8 7 1.1026 0.9350 2.5988 9 14 2.4027 -1.0666 4.0058 10 1 3.1313 -2.2967 3.6043 11 1 3.3191 -0.1705 4.7557 12 1 1.2519 -1.4330 4.8697 13 6 2.0324 -0.7104 -1.2304 14 6 1.7866 -2.0609 -1.3963 15 6 2.2513 -2.7157 -2.5204 16 6 2.9550 -2.0146 -3.4889 17 8 3.4081 -2.6553 -4.5985 18 6 3.1951 -0.6584 -3.3230 19 6 2.7335 -0.0094 -2.1942 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 0.9259 1.3043 3.4782 24 1 1.2345 -2.6052 -0.6445 25 1 2.0632 -3.7717 -2.6473 26 1 2.7822 -2.6556 -5.3356 27 1 3.7423 -0.1103 -4.0757 28 1 2.9197 1.0465 -2.0648 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238476116.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:03 Heat of formation + Delta-G solvation = -0.581436 kcal Electronic energy + Delta-G solvation = -13935.031557 eV Core-core repulsion = 11529.994530 eV Total energy + Delta-G solvation = -2405.037027 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.45340 -37.26942 -35.23966 -33.49872 -31.41819 -30.49594 -27.86376 -25.49221 -23.24316 -22.18829 -20.75205 -18.06780 -17.52852 -16.16490 -15.16479 -14.94772 -14.68514 -13.92466 -13.54880 -13.10169 -12.96204 -12.01690 -12.01137 -11.72090 -11.55765 -11.36755 -11.20016 -10.94867 -10.82977 -10.46893 -10.42574 -10.01866 -9.79545 -9.31562 -8.71418 -8.49966 -7.87797 -6.29426 -4.42729 1.74283 1.84317 3.18591 3.28176 3.31356 4.09052 4.22529 4.30764 4.40110 4.56313 5.01043 5.31238 5.38616 5.59078 5.84377 5.94740 6.08951 6.27758 6.49707 6.59763 6.69099 6.85231 6.86755 6.97768 7.24026 7.30346 7.49699 7.72141 7.90409 7.94210 8.58278 9.17265 9.27186 10.75185 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.035162 B = 0.009430 C = 0.008321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.125567 B = 2968.572560 C = 3364.170217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.188 3.812 3 C 0.275 3.725 4 N -0.515 5.515 5 C -0.518 4.518 6 H 0.077 0.923 7 C 0.069 3.931 8 N -0.873 5.873 9 Si 0.904 3.096 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.280 1.280 13 C -0.039 4.039 14 C -0.085 4.085 15 C -0.146 4.146 16 C 0.076 3.924 17 O -0.504 6.504 18 C -0.144 4.144 19 C -0.114 4.114 20 H 0.053 0.947 21 H 0.085 0.915 22 H 0.022 0.978 23 H 0.268 0.732 24 H 0.135 0.865 25 H 0.122 0.878 26 H 0.381 0.619 27 H 0.119 0.881 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.337 -6.942 -8.596 11.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.184 3.816 3 C -0.041 4.041 4 N -0.192 5.192 5 C -0.556 4.556 6 H 0.095 0.905 7 C -0.136 4.136 8 N -0.508 5.508 9 Si 0.731 3.269 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.206 1.206 13 C -0.041 4.041 14 C -0.103 4.103 15 C -0.165 4.165 16 C 0.032 3.968 17 O -0.313 6.313 18 C -0.163 4.163 19 C -0.133 4.133 20 H 0.072 0.928 21 H 0.104 0.896 22 H 0.041 0.959 23 H 0.078 0.922 24 H 0.153 0.847 25 H 0.140 0.860 26 H 0.235 0.765 27 H 0.137 0.863 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.337 -5.270 -8.099 9.669 hybrid contribution -0.141 -0.606 0.682 0.923 sum -0.477 -5.876 -7.418 9.475 Atomic orbital electron populations 1.21789 0.94184 1.01082 1.01293 1.14999 0.93614 0.81173 0.91773 1.29633 0.91052 0.94496 0.88926 1.80847 1.12023 1.13443 1.12897 1.20970 1.37303 1.09328 0.88036 0.90471 1.25073 0.94181 0.94745 0.99635 1.69870 1.37695 1.18638 1.24616 0.86322 0.78757 0.79756 0.82106 1.19230 1.20870 1.20578 1.20096 0.95323 0.94089 0.94554 1.20894 0.99105 0.93791 0.96540 1.21337 0.99600 0.99968 0.95578 1.18387 0.98982 0.90443 0.88956 1.84830 1.45406 1.77568 1.23457 1.21258 1.02084 0.93684 0.99228 1.21112 0.98455 1.00079 0.93623 0.92805 0.89579 0.95855 0.92168 0.84721 0.86012 0.76504 0.86294 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 8.11 37.16 0.30 -2.32 15 2 C 0.19 4.27 0.53 -159.60 -0.09 4.19 15 3 C 0.27 6.91 10.19 -20.76 -0.21 6.70 15 4 N -0.51 -13.58 18.47 42.15 0.78 -12.80 15 5 C -0.52 -12.69 7.57 -34.44 -0.26 -12.95 15 6 H 0.08 1.85 7.38 -52.48 -0.39 1.46 15 7 C 0.07 1.75 5.14 -17.82 -0.09 1.66 15 8 N -0.87 -23.27 10.51 55.43 0.58 -22.69 15 9 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 15 10 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 12 H -0.28 -6.07 7.11 56.52 0.40 -5.66 15 13 C -0.04 -0.78 4.73 -104.60 -0.49 -1.27 15 14 C -0.09 -1.48 8.54 -39.60 -0.34 -1.82 15 15 C -0.15 -2.26 9.99 -39.43 -0.39 -2.65 15 16 C 0.08 1.19 6.70 -39.22 -0.26 0.92 15 17 O -0.50 -6.72 13.50 -19.45 -0.26 -6.98 15 18 C -0.14 -2.37 9.99 -39.43 -0.39 -2.76 15 19 C -0.11 -2.16 9.14 -39.61 -0.36 -2.52 15 20 H 0.05 1.01 7.70 -51.93 -0.40 0.61 15 21 H 0.09 2.02 6.45 -51.93 -0.34 1.69 15 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 23 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 24 H 0.13 2.21 7.74 -52.49 -0.41 1.80 15 25 H 0.12 1.58 8.06 -52.49 -0.42 1.16 15 26 H 0.38 3.08 9.06 45.56 0.41 3.49 15 27 H 0.12 1.71 8.06 -52.49 -0.42 1.29 15 28 H 0.12 2.38 6.44 -52.48 -0.34 2.04 15 LS Contribution 251.31 15.07 3.79 3.79 Total: -1.00 -28.99 251.31 -4.58 -33.58 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -1.86 Total: 3.07 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -2.59 Total: -12.84 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 1.36 Total: -35.49 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.26 Total: -6.98 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.99 -4.58 -33.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238476116.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.994 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds