Wall clock time and date at job start Mon Mar 30 2020 03:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39730 * 120.20340 * 135.25863 * 3 2 1 5 5 C 1.37802 * 119.92140 * 180.02562 * 4 3 2 6 6 C 1.38572 * 120.34128 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.78668 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46938 * 160.00126 * 7 6 5 9 9 N 1.46899 * 109.47523 * 39.99571 * 7 6 5 10 10 C 1.50703 * 109.46789 * 279.99719 * 7 6 5 11 11 H 1.08006 * 120.00159 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00120 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00089 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 119.99938 * 180.02562 * 12 10 7 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 C 1.38014 * 120.42281 * 0.26828 * 6 5 4 19 19 C 1.38880 * 120.07069 * 359.45840 * 18 6 5 20 20 N 1.39031 * 120.17435 * 180.28368 * 19 18 6 21 21 H 1.07998 * 120.04451 * 0.05055 * 4 3 2 22 22 H 1.07993 * 119.82890 * 180.02562 * 5 4 3 23 23 H 1.00902 * 110.99647 * 300.00504 * 9 7 6 24 24 H 1.00897 * 110.99501 * 63.95792 * 9 7 6 25 25 H 0.96998 * 119.99255 * 0.02562 * 13 12 10 26 26 H 1.07999 * 119.96674 * 179.70020 * 18 6 5 27 27 H 0.97004 * 120.00013 * 180.24770 * 20 19 18 28 28 H 0.97006 * 119.99911 * 0.25865 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2705 0.8587 -0.8500 5 6 4.6485 0.8541 -0.8457 6 6 5.3430 0.0018 -0.0022 7 6 6.8500 0.0076 -0.0072 8 1 7.2181 -0.4304 0.9206 9 7 7.3341 1.3897 -0.1222 10 6 7.3514 -0.7992 -1.1772 11 1 6.6491 -1.2688 -1.8500 12 6 8.7068 -0.9379 -1.3886 13 7 9.5621 -0.3658 -0.5697 14 14 9.3283 -1.9374 -2.8392 15 1 9.4995 -3.3539 -2.4274 16 1 10.6332 -1.3927 -3.2929 17 1 8.3464 -1.8602 -3.9506 18 6 4.6634 -0.8559 0.8389 19 6 3.2747 -0.8617 0.8527 20 7 2.5879 -1.7206 1.7034 21 1 2.7343 1.5250 -1.5095 22 1 5.1900 1.5182 -1.5029 23 1 7.0060 1.8180 -0.9749 24 1 7.0653 1.9351 0.6830 25 1 9.2393 0.1535 0.1833 26 1 5.2121 -1.5205 1.4897 27 1 1.6179 -1.7251 1.7084 28 1 3.0788 -2.3153 2.2919 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238590854.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:33 Heat of formation + Delta-G solvation = 44.911863 kcal Electronic energy + Delta-G solvation = -13622.170316 eV Core-core repulsion = 11251.398777 eV Total energy + Delta-G solvation = -2370.771538 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.48303 -36.52078 -35.38292 -33.80707 -31.55173 -30.11411 -28.39463 -25.89147 -23.45003 -22.23073 -20.65417 -18.60227 -17.09218 -16.82508 -15.96682 -14.96150 -14.38992 -14.00533 -13.90024 -13.72658 -13.53009 -13.13247 -12.70453 -12.53320 -12.11586 -11.89560 -11.21600 -10.94618 -10.71896 -10.45237 -10.27668 -10.06012 -8.98098 -8.38784 -8.14193 -7.61344 -7.38679 -6.22415 -4.06620 1.26105 1.88007 2.80129 3.24822 3.46213 3.49826 3.65354 3.82974 4.19587 4.26711 4.58482 5.08166 5.40943 5.48143 5.72537 5.82714 5.90408 6.02536 6.26417 6.42252 6.69696 6.81075 7.06114 7.30162 7.50304 7.59733 7.75557 7.90221 8.24024 8.60154 8.70747 9.00319 9.76888 11.17601 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.042295 B = 0.007164 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.850378 B = 3907.562936 C = 3957.495747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.273 3.727 3 C -0.149 4.149 4 C -0.027 4.027 5 C -0.174 4.174 6 C 0.012 3.988 7 C 0.231 3.769 8 H 0.042 0.958 9 N -0.829 5.829 10 C -0.608 4.608 11 H 0.049 0.951 12 C 0.039 3.961 13 N -0.890 5.890 14 Si 1.066 2.934 15 H -0.290 1.290 16 H -0.286 1.286 17 H -0.290 1.290 18 C -0.201 4.201 19 C 0.266 3.734 20 N -0.871 5.871 21 H 0.123 0.877 22 H 0.126 0.874 23 H 0.328 0.672 24 H 0.304 0.696 25 H 0.290 0.710 26 H 0.126 0.874 27 H 0.394 0.606 28 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.896 0.181 2.837 9.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.039 4.039 3 C -0.158 4.158 4 C -0.048 4.048 5 C -0.194 4.194 6 C 0.008 3.992 7 C 0.122 3.878 8 H 0.059 0.941 9 N -0.357 5.357 10 C -0.647 4.647 11 H 0.068 0.932 12 C -0.171 4.171 13 N -0.524 5.524 14 Si 0.895 3.105 15 H -0.217 1.217 16 H -0.211 1.211 17 H -0.216 1.216 18 C -0.224 4.224 19 C 0.157 3.843 20 N -0.409 5.409 21 H 0.140 0.860 22 H 0.143 0.857 23 H 0.142 0.858 24 H 0.114 0.886 25 H 0.103 0.897 26 H 0.144 0.856 27 H 0.222 0.778 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.497 -0.621 2.073 8.768 hybrid contribution -2.278 0.467 0.929 2.504 sum -10.774 -0.154 3.003 11.186 Atomic orbital electron populations 1.81203 1.12110 1.10095 1.10145 1.25754 0.92646 0.92775 0.92761 1.15383 0.83596 1.08307 1.08561 1.20821 0.94171 0.94986 0.94795 1.20713 0.92718 1.03448 1.02567 1.21561 1.00379 0.88890 0.88335 1.18509 0.82373 0.87845 0.99050 0.94056 1.59448 1.67133 1.04037 1.05043 1.21663 0.94242 1.35687 1.13116 0.93247 1.25621 0.93066 0.96944 1.01449 1.70531 1.37857 1.29037 1.14928 0.83602 0.75731 0.75793 0.75327 1.21678 1.21131 1.21613 1.20482 0.90348 1.05415 1.06203 1.17650 0.91445 0.87549 0.87648 1.42422 1.08942 1.44345 1.45177 0.85952 0.85652 0.85813 0.88565 0.89700 0.85565 0.77787 0.76863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.43 18.54 41.84 0.78 -6.65 15 2 C 0.27 4.13 14.09 -22.48 -0.32 3.81 15 3 C -0.15 -2.24 5.76 -106.62 -0.61 -2.85 15 4 C -0.03 -0.40 9.75 -39.18 -0.38 -0.78 15 5 C -0.17 -2.92 9.26 -39.62 -0.37 -3.29 15 6 C 0.01 0.23 4.89 -104.58 -0.51 -0.28 15 7 C 0.23 5.18 2.46 -70.02 -0.17 5.01 15 8 H 0.04 1.00 7.86 -51.93 -0.41 0.60 15 9 N -0.83 -17.33 7.62 -6.65 -0.05 -17.38 15 10 C -0.61 -15.82 8.70 -34.44 -0.30 -16.12 15 11 H 0.05 1.31 7.74 -52.48 -0.41 0.91 15 12 C 0.04 1.07 5.39 -17.82 -0.10 0.97 15 13 N -0.89 -25.63 13.51 55.43 0.75 -24.89 15 14 Si 1.07 24.32 29.90 -169.99 -5.08 19.23 15 15 H -0.29 -6.42 7.11 56.52 0.40 -6.02 15 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 17 H -0.29 -6.37 7.11 56.52 0.40 -5.96 15 18 C -0.20 -3.36 9.49 -39.43 -0.37 -3.73 15 19 C 0.27 3.91 6.76 -83.56 -0.56 3.35 15 20 N -0.87 -10.02 8.99 32.57 0.29 -9.72 15 21 H 0.12 1.52 8.06 -52.49 -0.42 1.10 15 22 H 0.13 2.05 6.64 -52.49 -0.35 1.70 15 23 H 0.33 6.56 7.32 -39.29 -0.29 6.28 15 24 H 0.30 5.54 9.06 -39.29 -0.36 5.18 15 25 H 0.29 8.31 6.39 -40.82 -0.26 8.05 15 26 H 0.13 2.01 8.03 -52.49 -0.42 1.59 15 27 H 0.39 4.26 7.69 -40.82 -0.31 3.95 15 28 H 0.40 3.76 8.84 -40.82 -0.36 3.40 15 LS Contribution 254.04 15.07 3.83 3.83 Total: -1.00 -29.32 254.04 -5.57 -34.88 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -2.38 Total: 14.61 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -3.70 Total: -13.91 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 1.77 Total: -58.64 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -5.08 Total: 19.23 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.32 -5.57 -34.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238590854.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.795 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds