Wall clock time and date at job start Mon Mar 30 2020 03:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39737 * 120.20404 * 135.12803 * 3 2 1 5 5 C 1.37791 * 119.91663 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.82508 * 180.27648 * 5 4 3 7 7 H 1.08999 * 109.47013 * 19.73399 * 6 5 4 8 8 N 1.46909 * 109.47014 * 139.72637 * 6 5 4 9 9 C 1.50691 * 109.47505 * 259.72819 * 6 5 4 10 10 H 1.08001 * 120.00059 * 359.97438 * 9 6 5 11 11 C 1.37880 * 120.00080 * 179.97438 * 9 6 5 12 12 N 1.31519 * 120.00074 * 359.97438 * 11 9 6 13 13 Si 1.86806 * 120.00001 * 180.02562 * 11 9 6 14 14 H 1.48493 * 109.47462 * 59.99809 * 13 11 9 15 15 H 1.48501 * 109.46879 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46827 * 299.99563 * 13 11 9 17 17 C 1.38575 * 120.34748 * 0.02562 * 5 4 3 18 18 C 1.38012 * 120.42379 * 0.02562 * 17 5 4 19 19 C 1.38891 * 120.06773 * 359.97438 * 18 17 5 20 20 N 1.39034 * 120.16974 * 180.02562 * 19 18 17 21 21 H 1.07991 * 120.04083 * 0.04079 * 4 3 2 22 22 H 1.00897 * 110.99933 * 296.05208 * 8 6 5 23 23 H 1.00902 * 110.99392 * 60.00231 * 8 6 5 24 24 H 0.96997 * 119.99616 * 179.97438 * 12 11 9 25 25 H 1.07999 * 119.78579 * 179.97438 * 17 5 4 26 26 H 1.07993 * 119.97010 * 180.02562 * 18 17 5 27 27 H 0.96994 * 119.99931 * 359.97438 * 20 19 18 28 28 H 0.96998 * 119.99932 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2706 0.8568 -0.8520 5 6 4.6485 0.8521 -0.8475 6 6 5.4042 1.7808 -1.7628 7 1 4.7494 2.5937 -2.0767 8 7 6.5641 2.3336 -1.0505 9 6 5.8752 1.0186 -2.9744 10 1 5.6503 -0.0332 -3.0718 11 6 6.5933 1.6641 -3.9587 12 7 6.8668 2.9451 -3.8403 13 14 7.1766 0.7194 -5.4610 14 1 6.0040 0.1606 -6.1805 15 1 7.9213 1.6346 -6.3628 16 1 8.0690 -0.3880 -5.0336 17 6 5.3430 0.0017 -0.0021 18 6 4.6635 -0.8505 0.8445 19 6 3.2746 -0.8602 0.8543 20 7 2.5879 -1.7175 1.7066 21 1 2.7344 1.5214 -1.5130 22 1 6.2717 2.9029 -0.2705 23 1 7.1867 1.5991 -0.7489 24 1 7.3723 3.3990 -4.5326 25 1 6.4230 0.0053 -0.0064 26 1 5.2121 -1.5099 1.5006 27 1 3.0787 -2.3110 2.2962 28 1 1.6179 -1.7219 1.7117 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238620534.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:31 Heat of formation + Delta-G solvation = 31.217798 kcal Electronic energy + Delta-G solvation = -13593.010366 eV Core-core repulsion = 11221.645009 eV Total energy + Delta-G solvation = -2371.365358 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.65261 -37.72161 -36.75074 -34.75578 -33.14447 -32.04596 -29.54054 -27.61695 -24.80422 -23.93741 -22.22653 -19.13170 -18.43574 -17.93231 -17.61365 -16.48367 -16.01706 -15.45595 -15.18644 -15.11337 -14.72371 -14.29045 -14.03909 -13.87272 -13.55718 -13.10867 -13.06912 -12.65441 -12.42374 -12.04046 -11.85574 -11.45105 -10.88011 -10.45215 -9.80812 -8.83165 -8.33126 -7.87200 -6.09041 0.01989 0.74293 1.49857 1.50659 1.57206 1.60797 2.03467 2.54075 2.88697 2.99890 3.09258 3.35633 3.97264 4.30343 4.53025 4.61144 4.64604 4.78406 5.06453 5.23677 5.43422 5.51997 5.85244 5.90552 6.00817 6.30026 6.45024 6.47693 6.78486 6.89282 7.25993 7.42242 7.63512 9.13856 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.036371 B = 0.007576 C = 0.007246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.652344 B = 3695.058377 C = 3863.101672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.285 3.715 3 C -0.133 4.133 4 C -0.035 4.035 5 C -0.152 4.152 6 C 0.263 3.737 7 H 0.008 0.992 8 N -0.822 5.822 9 C -0.538 4.538 10 H 0.049 0.951 11 C 0.035 3.965 12 N -0.881 5.881 13 Si 0.941 3.059 14 H -0.277 1.277 15 H -0.290 1.290 16 H -0.270 1.270 17 C -0.037 4.037 18 C -0.188 4.188 19 C 0.260 3.740 20 N -0.856 5.856 21 H 0.115 0.885 22 H 0.313 0.687 23 H 0.326 0.674 24 H 0.253 0.747 25 H 0.131 0.869 26 H 0.161 0.839 27 H 0.417 0.583 28 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 -8.792 11.284 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.028 4.028 3 C -0.143 4.143 4 C -0.056 4.056 5 C -0.157 4.157 6 C 0.153 3.847 7 H 0.025 0.975 8 N -0.350 5.350 9 C -0.577 4.577 10 H 0.067 0.933 11 C -0.168 4.168 12 N -0.518 5.518 13 Si 0.768 3.232 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.196 1.196 17 C -0.057 4.057 18 C -0.210 4.210 19 C 0.149 3.851 20 N -0.395 5.395 21 H 0.133 0.867 22 H 0.124 0.876 23 H 0.139 0.861 24 H 0.062 0.938 25 H 0.149 0.851 26 H 0.179 0.821 27 H 0.249 0.751 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.149 -8.243 10.507 13.984 hybrid contribution 0.130 -0.800 -0.211 0.837 sum -4.018 -9.043 10.296 14.280 Atomic orbital electron populations 1.81205 1.12668 1.10648 1.10733 1.25766 0.92609 0.92215 0.92167 1.15505 0.83320 1.07615 1.07813 1.20794 0.93897 0.95850 0.95083 1.21018 0.93620 1.01364 0.99652 1.17740 0.87410 0.89888 0.89627 0.97457 1.58970 1.19281 1.26812 1.29893 1.21193 1.36488 0.95595 1.04405 0.93262 1.25636 0.95864 0.95364 0.99918 1.70220 1.38249 1.09867 1.33440 0.85913 0.78358 0.78746 0.80210 1.20304 1.21589 1.19559 1.21084 1.00528 0.92025 0.92030 1.20736 0.90852 1.04596 1.04818 1.17566 0.91608 0.87890 0.88016 1.42334 1.09281 1.43686 1.44199 0.86740 0.87626 0.86119 0.93802 0.85093 0.82120 0.75115 0.77336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.74 18.54 19.00 0.35 -15.39 15 2 C 0.29 8.77 14.09 88.33 1.24 10.01 15 3 C -0.13 -3.96 5.76 -21.15 -0.12 -4.08 15 4 C -0.03 -1.21 9.37 22.53 0.21 -1.00 15 5 C -0.15 -5.67 4.88 -19.89 -0.10 -5.77 15 6 C 0.26 12.32 2.84 43.42 0.12 12.44 15 7 H 0.01 0.40 7.99 -2.39 -0.02 0.38 15 8 N -0.82 -35.86 8.36 -174.95 -1.46 -37.32 15 9 C -0.54 -28.26 8.70 25.60 0.22 -28.04 15 10 H 0.05 2.57 7.74 -2.91 -0.02 2.55 15 11 C 0.04 1.92 5.39 84.65 0.46 2.38 15 12 N -0.88 -50.74 12.77 21.45 0.27 -50.47 15 13 Si 0.94 42.91 29.54 68.60 2.03 44.94 15 14 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 15 H -0.29 -13.18 7.11 99.48 0.71 -12.48 15 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 17 C -0.04 -1.11 9.27 22.30 0.21 -0.90 15 18 C -0.19 -4.36 9.88 22.37 0.22 -4.14 15 19 C 0.26 6.23 6.76 38.67 0.26 6.49 15 20 N -0.86 -14.31 8.99 -50.88 -0.46 -14.77 15 21 H 0.11 4.16 8.02 -2.92 -0.02 4.13 15 22 H 0.31 12.07 9.06 -89.70 -0.81 11.26 15 23 H 0.33 13.01 7.32 -89.69 -0.66 12.35 15 24 H 0.25 14.07 8.31 -92.71 -0.77 13.30 15 25 H 0.13 3.77 6.64 -2.91 -0.02 3.75 15 26 H 0.16 2.52 8.06 -2.91 -0.02 2.50 15 27 H 0.42 4.34 8.84 -92.71 -0.82 3.52 15 28 H 0.40 6.76 7.69 -92.71 -0.71 6.04 15 Total: -1.00 -62.98 256.13 1.70 -61.27 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -1.76 Total: 24.34 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 2.73 Total: -12.60 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -1.29 Total: -117.95 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -62.98 1.70 -61.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238620534.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.493 kcal (2) G-P(sol) polarization free energy of solvation -62.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds