Wall clock time and date at job start Mon Mar 30 2020 02:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30800 * 1 3 3 Si 1.86798 * 120.00011 * 2 1 4 4 H 1.48497 * 109.47327 * 90.00424 * 3 2 1 5 5 H 1.48507 * 109.47159 * 210.00002 * 3 2 1 6 6 H 1.48498 * 109.47428 * 329.99874 * 3 2 1 7 7 C 1.40155 * 120.00166 * 179.72744 * 2 1 3 8 8 H 1.08003 * 120.00083 * 11.83717 * 7 2 1 9 9 C 1.39751 * 120.00449 * 191.83881 * 7 2 1 10 10 O 1.35091 * 126.20377 * 8.05995 * 9 7 2 11 11 C 1.34238 * 109.38584 * 179.82977 * 10 9 7 12 12 C 1.35659 * 109.21844 * 0.44287 * 11 10 9 13 13 C 1.39554 * 126.20544 * 188.37447 * 9 7 2 14 14 C 1.50693 * 126.77265 * 359.97438 * 13 9 7 15 15 C 1.50705 * 109.46876 * 85.00459 * 14 13 9 16 16 C 1.40882 * 126.29104 * 269.68985 * 15 14 13 17 17 C 1.34854 * 107.42032 * 179.83264 * 16 15 14 18 18 N 1.36346 * 108.21156 * 0.42720 * 17 16 15 19 19 H 0.97006 * 125.63094 * 179.76162 * 18 17 16 20 20 C 1.34851 * 126.29035 * 90.00142 * 15 14 13 21 21 H 0.96999 * 119.99912 * 174.73983 * 1 2 3 22 22 H 1.07999 * 125.38810 * 180.15323 * 11 10 9 23 23 H 1.08005 * 126.32832 * 179.69691 * 12 11 10 24 24 H 1.09000 * 109.47200 * 205.00221 * 14 13 9 25 25 H 1.08996 * 109.47819 * 325.00603 * 14 13 9 26 26 H 1.08001 * 126.29613 * 359.96005 * 16 15 14 27 27 H 1.07998 * 125.89966 * 180.15542 * 17 16 15 28 28 H 1.07998 * 125.89091 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4896 2.0464 1.4000 5 1 3.5396 1.4401 -0.7001 6 1 1.4395 2.6527 -0.7000 7 6 2.0088 -1.2137 0.0058 8 1 1.4861 -2.1401 -0.1817 9 6 3.3840 -1.2255 0.2541 10 8 4.1322 -0.1731 0.6512 11 6 5.4092 -0.5622 0.7922 12 6 5.5125 -1.8778 0.4778 13 6 4.2345 -2.3250 0.1310 14 6 3.8507 -3.7196 -0.2919 15 6 3.8515 -3.8063 -1.7964 16 6 2.7570 -3.5538 -2.6468 17 6 3.1793 -3.7391 -3.9141 18 7 4.4919 -4.1061 -3.8766 19 1 5.0452 -4.3055 -4.6480 20 6 4.8984 -4.1456 -2.5758 21 1 -0.4850 -0.8365 -0.0770 22 1 6.2259 0.0729 1.1019 23 1 6.4155 -2.4701 0.4922 24 1 4.5684 -4.4327 0.1135 25 1 2.8548 -3.9524 0.0849 26 1 1.7631 -3.2630 -2.3404 27 1 2.5799 -3.6217 -4.8048 28 1 5.8882 -4.4037 -2.2294 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259658003.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:41 Heat of formation + Delta-G solvation = 34.533938 kcal Electronic energy + Delta-G solvation = -14096.189394 eV Core-core repulsion = 11692.675084 eV Total energy + Delta-G solvation = -2403.514310 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.65009 -40.22672 -33.73990 -33.18084 -30.43662 -29.20669 -28.54685 -25.90062 -23.56618 -20.52752 -20.01753 -19.18260 -18.47401 -17.85621 -17.21557 -15.57235 -14.46691 -13.76351 -13.70174 -13.38115 -13.09648 -12.96402 -12.43848 -12.18342 -11.61597 -11.49425 -11.11727 -11.00016 -10.92878 -10.10430 -9.78058 -9.51638 -9.20680 -8.16890 -7.95366 -7.45070 -7.37361 -7.13592 -4.36792 2.87341 3.10955 3.30460 3.55186 3.67317 3.71201 3.88449 4.13979 4.15946 4.96015 5.24880 5.63787 5.73139 6.05269 6.25030 6.38369 6.46302 6.57433 6.79331 6.96163 7.05834 7.13082 7.30320 7.54646 7.62504 7.72070 7.85053 7.99236 8.16107 8.21127 8.52426 8.63224 9.08760 10.06327 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.011578 C = 0.009478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.471738 B = 2417.743099 C = 2953.586124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.043 3.957 3 Si 1.073 2.927 4 H -0.275 1.275 5 H -0.259 1.259 6 H -0.288 1.288 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.190 3.810 10 O -0.212 6.212 11 C -0.190 4.190 12 C -0.148 4.148 13 C -0.347 4.347 14 C 0.056 3.944 15 C -0.126 4.126 16 C -0.179 4.179 17 C -0.035 4.035 18 N -0.570 5.570 19 H 0.405 0.595 20 C -0.036 4.036 21 H 0.286 0.714 22 H 0.164 0.836 23 H 0.111 0.889 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.131 0.869 27 H 0.154 0.846 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.298 -4.838 -5.230 9.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.176 4.176 3 Si 0.899 3.101 4 H -0.201 1.201 5 H -0.184 1.184 6 H -0.216 1.216 7 C -0.513 4.513 8 H 0.117 0.883 9 C 0.139 3.861 10 O -0.114 6.114 11 C -0.254 4.254 12 C -0.168 4.168 13 C -0.349 4.349 14 C 0.018 3.982 15 C -0.133 4.133 16 C -0.204 4.204 17 C -0.165 4.165 18 N -0.166 5.166 19 H 0.240 0.760 20 C -0.165 4.165 21 H 0.097 0.903 22 H 0.181 0.819 23 H 0.129 0.871 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.149 0.851 27 H 0.171 0.829 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.017 -3.004 -5.221 8.514 hybrid contribution 0.568 -1.902 -0.474 2.041 sum 6.584 -4.907 -5.695 9.993 Atomic orbital electron populations 1.70549 1.07772 1.32956 1.32703 1.27259 0.95820 1.04628 0.89933 0.83446 0.75213 0.72600 0.78829 1.20064 1.18413 1.21568 1.19705 0.89666 0.96995 1.44981 0.88307 1.19642 0.91169 0.83319 0.92000 1.83937 1.19024 1.37158 1.71236 1.22924 0.85296 0.96176 1.20972 1.20887 0.96923 0.94742 1.04218 1.19604 0.92687 0.96415 1.26241 1.17761 0.99375 0.92752 0.88330 1.19795 0.93089 1.04106 0.96310 1.20894 0.99900 1.07759 0.91880 1.21678 0.85314 1.10427 0.99085 1.41803 1.10693 1.56584 1.07501 0.76041 1.21473 0.99687 1.12593 0.82746 0.90301 0.81885 0.87059 0.93548 0.92693 0.85090 0.82854 0.83012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.17 13.65 55.56 0.76 -21.41 15 2 C 0.04 1.18 5.52 -17.27 -0.10 1.08 15 3 Si 1.07 25.75 26.43 -169.99 -4.49 21.26 15 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.26 -6.32 6.34 56.52 0.36 -5.96 15 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 7 C -0.48 -13.33 9.50 -38.30 -0.36 -13.70 15 8 H 0.10 2.75 7.60 -52.48 -0.40 2.35 15 9 C 0.19 5.15 6.45 -38.53 -0.25 4.91 15 10 O -0.21 -5.61 6.09 3.67 0.02 -5.59 15 11 C -0.19 -4.45 12.07 29.81 0.36 -4.09 15 12 C -0.15 -3.42 10.81 -39.93 -0.43 -3.85 15 13 C -0.35 -8.61 5.52 -103.56 -0.57 -9.18 15 14 C 0.06 1.22 5.97 -29.04 -0.17 1.05 15 15 C -0.13 -2.60 5.37 -104.82 -0.56 -3.16 15 16 C -0.18 -3.61 10.81 -39.78 -0.43 -4.04 15 17 C -0.04 -0.58 11.94 -16.75 -0.20 -0.78 15 18 N -0.57 -8.53 6.07 -12.85 -0.08 -8.61 15 19 H 0.40 4.38 8.96 -40.82 -0.37 4.01 15 20 C -0.04 -0.63 11.85 -16.75 -0.20 -0.83 15 21 H 0.29 7.48 8.73 -40.82 -0.36 7.12 15 22 H 0.16 3.16 8.06 -52.49 -0.42 2.73 15 23 H 0.11 2.21 8.06 -52.48 -0.42 1.79 15 24 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 25 H 0.05 1.23 7.72 -51.93 -0.40 0.83 15 26 H 0.13 2.75 8.06 -52.49 -0.42 2.33 15 27 H 0.15 2.03 8.06 -52.49 -0.42 1.61 15 28 H 0.15 2.28 8.06 -52.49 -0.42 1.86 15 LS Contribution 250.06 15.07 3.77 3.77 Total: -1.00 -30.44 250.06 -5.84 -36.28 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -2.90 Total: 6.89 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: -2.92 Total: -32.59 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 0.68 Total: -30.01 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: 0.02 Total: -5.59 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -4.49 Total: 21.26 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.44 -5.84 -36.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259658003.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.812 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds