Wall clock time and date at job start Mon Mar 30 2020 02:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30800 * 1 3 3 Si 1.86798 * 120.00011 * 2 1 4 4 H 1.48497 * 109.47327 * 90.00424 * 3 2 1 5 5 H 1.48507 * 109.47159 * 210.00002 * 3 2 1 6 6 H 1.48498 * 109.47428 * 329.99874 * 3 2 1 7 7 C 1.40155 * 120.00166 * 179.72744 * 2 1 3 8 8 H 1.08003 * 120.00083 * 11.83717 * 7 2 1 9 9 C 1.39751 * 120.00449 * 191.83881 * 7 2 1 10 10 O 1.35091 * 126.20377 * 8.05995 * 9 7 2 11 11 C 1.34238 * 109.38584 * 179.82977 * 10 9 7 12 12 C 1.35659 * 109.21844 * 0.44287 * 11 10 9 13 13 C 1.39554 * 126.20544 * 188.37447 * 9 7 2 14 14 C 1.50693 * 126.77265 * 359.97438 * 13 9 7 15 15 C 1.50705 * 109.46876 * 85.00459 * 14 13 9 16 16 C 1.40882 * 126.29104 * 269.68985 * 15 14 13 17 17 C 1.34854 * 107.42032 * 179.83264 * 16 15 14 18 18 N 1.36346 * 108.21156 * 0.42720 * 17 16 15 19 19 H 0.97006 * 125.63094 * 179.76162 * 18 17 16 20 20 C 1.34851 * 126.29035 * 90.00142 * 15 14 13 21 21 H 0.96999 * 119.99912 * 174.73983 * 1 2 3 22 22 H 1.07999 * 125.38810 * 180.15323 * 11 10 9 23 23 H 1.08005 * 126.32832 * 179.69691 * 12 11 10 24 24 H 1.09000 * 109.47200 * 205.00221 * 14 13 9 25 25 H 1.08996 * 109.47819 * 325.00603 * 14 13 9 26 26 H 1.08001 * 126.29613 * 359.96005 * 16 15 14 27 27 H 1.07998 * 125.89966 * 180.15542 * 17 16 15 28 28 H 1.07998 * 125.89091 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4896 2.0464 1.4000 5 1 3.5396 1.4401 -0.7001 6 1 1.4395 2.6527 -0.7000 7 6 2.0088 -1.2137 0.0058 8 1 1.4861 -2.1401 -0.1817 9 6 3.3840 -1.2255 0.2541 10 8 4.1322 -0.1731 0.6512 11 6 5.4092 -0.5622 0.7922 12 6 5.5125 -1.8778 0.4778 13 6 4.2345 -2.3250 0.1310 14 6 3.8507 -3.7196 -0.2919 15 6 3.8515 -3.8063 -1.7964 16 6 2.7570 -3.5538 -2.6468 17 6 3.1793 -3.7391 -3.9141 18 7 4.4919 -4.1061 -3.8766 19 1 5.0452 -4.3055 -4.6480 20 6 4.8984 -4.1456 -2.5758 21 1 -0.4850 -0.8365 -0.0770 22 1 6.2259 0.0729 1.1019 23 1 6.4155 -2.4701 0.4922 24 1 4.5684 -4.4327 0.1135 25 1 2.8548 -3.9524 0.0849 26 1 1.7631 -3.2630 -2.3404 27 1 2.5799 -3.6217 -4.8048 28 1 5.8882 -4.4037 -2.2294 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259658003.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:41 Heat of formation + Delta-G solvation = 15.762970 kcal Electronic energy + Delta-G solvation = -14097.003364 eV Core-core repulsion = 11692.675084 eV Total energy + Delta-G solvation = -2404.328280 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.53757 -41.67437 -35.73753 -34.95952 -32.09466 -31.09063 -30.04640 -27.56491 -25.47441 -22.36111 -21.49076 -20.92045 -20.24149 -19.56249 -18.71832 -17.46156 -16.44874 -15.68189 -15.53595 -14.85825 -14.65596 -14.39578 -14.24700 -13.83339 -13.36453 -13.14742 -12.88499 -12.77798 -12.74457 -11.98112 -11.63486 -11.42341 -11.21033 -10.01392 -9.45163 -9.41013 -9.17009 -8.82551 -6.40280 1.14280 1.37409 1.52215 1.64756 1.77507 2.08225 2.21338 2.34812 2.69072 3.01836 3.22389 4.29733 4.49083 4.55946 4.63878 4.68610 4.82797 5.00000 5.06035 5.30144 5.38949 5.44907 5.47874 5.58193 5.84367 5.96173 6.19669 6.23341 6.36994 6.59829 6.61076 7.00660 7.10057 7.98818 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.011578 C = 0.009478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.471738 B = 2417.743099 C = 2953.586124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.010 3.990 3 Si 1.108 2.892 4 H -0.267 1.267 5 H -0.265 1.265 6 H -0.272 1.272 7 C -0.505 4.505 8 H 0.075 0.925 9 C 0.150 3.850 10 O -0.225 6.225 11 C -0.186 4.186 12 C -0.157 4.157 13 C -0.344 4.344 14 C 0.057 3.943 15 C -0.168 4.168 16 C -0.227 4.227 17 C -0.015 4.015 18 N -0.549 5.549 19 H 0.430 0.570 20 C -0.021 4.021 21 H 0.280 0.720 22 H 0.207 0.793 23 H 0.149 0.851 24 H 0.069 0.931 25 H 0.029 0.971 26 H 0.101 0.899 27 H 0.189 0.811 28 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.261 -4.937 -6.306 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.204 4.204 3 Si 0.930 3.070 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.536 4.536 8 H 0.093 0.907 9 C 0.099 3.901 10 O -0.127 6.127 11 C -0.249 4.249 12 C -0.176 4.176 13 C -0.347 4.347 14 C 0.019 3.981 15 C -0.174 4.174 16 C -0.253 4.253 17 C -0.146 4.146 18 N -0.146 5.146 19 H 0.269 0.731 20 C -0.152 4.152 21 H 0.090 0.910 22 H 0.224 0.776 23 H 0.167 0.833 24 H 0.088 0.912 25 H 0.048 0.952 26 H 0.120 0.880 27 H 0.206 0.794 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.980 -3.122 -6.320 11.416 hybrid contribution -0.179 -2.001 -0.149 2.014 sum 8.801 -5.123 -6.468 12.064 Atomic orbital electron populations 1.70589 1.08073 1.32575 1.35055 1.28187 0.96072 1.06692 0.89460 0.83013 0.74174 0.70586 0.79226 1.19244 1.19114 1.19844 1.19563 0.90591 0.96448 1.46954 0.90705 1.19812 0.91485 0.84590 0.94177 1.83920 1.20348 1.37374 1.71073 1.23950 0.84931 0.97313 1.18674 1.21302 0.97405 0.95076 1.03801 1.20192 0.93354 0.97022 1.24094 1.17736 0.98528 0.91795 0.90025 1.19764 0.94690 1.07286 0.95669 1.20898 0.99310 1.10961 0.94108 1.22036 0.86010 1.07832 0.98767 1.41786 1.10270 1.54701 1.07806 0.73086 1.21776 0.99861 1.10464 0.83096 0.90953 0.77608 0.83284 0.91212 0.95226 0.88037 0.79387 0.79974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.43 13.65 21.87 0.30 -47.13 15 2 C 0.01 0.58 5.52 85.31 0.47 1.05 15 3 Si 1.11 52.52 26.43 68.60 1.81 54.33 15 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 5 H -0.27 -12.70 6.34 99.48 0.63 -12.07 15 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 7 C -0.51 -29.26 9.50 23.10 0.22 -29.04 15 8 H 0.07 4.54 7.60 -2.91 -0.02 4.52 15 9 C 0.15 8.26 6.45 22.95 0.15 8.41 15 10 O -0.23 -11.71 6.09 -9.79 -0.06 -11.77 15 11 C -0.19 -8.10 12.07 67.22 0.81 -7.29 15 12 C -0.16 -6.74 10.81 22.04 0.24 -6.51 15 13 C -0.34 -16.90 5.52 -19.18 -0.11 -17.00 15 14 C 0.06 2.51 5.97 29.10 0.17 2.68 15 15 C -0.17 -6.80 5.37 -19.99 -0.11 -6.91 15 16 C -0.23 -9.36 10.81 22.14 0.24 -9.12 15 17 C -0.01 -0.47 11.94 83.21 0.99 0.53 15 18 N -0.55 -14.42 6.07 -194.56 -1.18 -15.60 15 19 H 0.43 7.25 8.96 -92.70 -0.83 6.42 15 20 C -0.02 -0.68 11.85 83.21 0.99 0.31 15 21 H 0.28 15.59 8.73 -92.71 -0.81 14.78 15 22 H 0.21 6.97 8.06 -2.91 -0.02 6.95 15 23 H 0.15 5.20 8.06 -2.91 -0.02 5.18 15 24 H 0.07 2.64 8.14 -2.39 -0.02 2.62 15 25 H 0.03 1.39 7.72 -2.39 -0.02 1.38 15 26 H 0.10 4.65 8.06 -2.91 -0.02 4.63 15 27 H 0.19 4.41 8.06 -2.91 -0.02 4.39 15 28 H 0.18 4.59 8.06 -2.91 -0.02 4.57 15 Total: -1.00 -67.65 250.06 5.16 -62.48 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.23 Total: 20.58 kcal Atomic # 6 Polarization: -66.95 SS G_CDS: 4.07 Total: -62.89 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -0.88 Total: -62.73 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.06 Total: -11.77 kcal Atomic # 14 Polarization: 52.52 SS G_CDS: 1.81 Total: 54.33 kcal Total: -67.65 5.16 -62.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259658003.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.246 kcal (2) G-P(sol) polarization free energy of solvation -67.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds