Wall clock time and date at job start Mon Mar 30 2020 02:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36851 * 125.06479 * 2 1 4 4 C 1.34315 * 109.88261 * 180.02562 * 3 2 1 5 5 C 1.46381 * 106.99309 * 0.02562 * 4 3 2 6 6 C 1.37708 * 125.06490 * 180.02562 * 2 1 3 7 7 C 1.39153 * 133.37667 * 359.97105 * 6 2 1 8 8 C 1.37867 * 120.06749 * 180.02562 * 7 6 2 9 9 C 1.38619 * 120.74872 * 359.97250 * 8 7 6 10 10 C 1.38413 * 120.29684 * 359.97438 * 9 8 7 11 11 O 1.35656 * 120.24314 * 179.97438 * 10 9 8 12 12 C 1.34798 * 116.99977 * 354.41312 * 11 10 9 13 13 H 1.07996 * 120.00257 * 5.05241 * 12 11 10 14 14 C 1.38617 * 119.99981 * 185.06297 * 12 11 10 15 15 N 1.31584 * 119.99486 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00146 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47362 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47525 * 119.99771 * 16 14 12 19 19 H 1.48499 * 109.46974 * 239.99418 * 16 14 12 20 20 H 1.09002 * 109.46728 * 89.97609 * 1 2 3 21 21 H 1.09000 * 109.47185 * 209.97454 * 1 2 3 22 22 H 1.08993 * 109.46964 * 329.97256 * 1 2 3 23 23 H 1.07999 * 125.05855 * 0.07557 * 3 2 1 24 24 H 1.07998 * 126.50122 * 179.97438 * 4 3 2 25 25 H 1.08003 * 119.96535 * 0.30644 * 7 6 2 26 26 H 1.08002 * 119.62238 * 179.97438 * 8 7 6 27 27 H 1.08002 * 119.85265 * 180.02562 * 9 8 7 28 28 H 0.97010 * 119.99514 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2513 1.1201 0.0000 4 6 3.5476 0.7684 -0.0006 5 6 3.5938 -0.6947 -0.0016 6 6 2.2562 -1.1271 -0.0005 7 6 1.9774 -2.4905 -0.0006 8 6 3.0080 -3.4063 -0.0006 9 6 4.3291 -2.9865 -0.0012 10 6 4.6327 -1.6361 -0.0022 11 8 5.9260 -1.2266 -0.0021 12 6 6.8702 -2.1813 0.1158 13 1 6.5867 -3.2233 0.1226 14 6 8.2052 -1.8256 0.2286 15 7 8.5507 -0.5559 0.2200 16 14 9.5137 -3.1485 0.3928 17 1 8.8696 -4.4865 0.3765 18 1 10.4681 -3.0442 -0.7401 19 1 10.2436 -2.9665 1.6732 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3633 -0.8902 0.5134 22 1 -0.3633 0.8897 0.5142 23 1 1.8841 2.1358 0.0012 24 1 4.3949 1.4380 -0.0011 25 1 0.9527 -2.8315 -0.0052 26 1 2.7834 -4.4627 -0.0003 27 1 5.1251 -3.7165 -0.0016 28 1 9.4850 -0.3070 0.2986 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259814939.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:55 Heat of formation + Delta-G solvation = 16.267419 kcal Electronic energy + Delta-G solvation = -13841.039787 eV Core-core repulsion = 11436.733381 eV Total energy + Delta-G solvation = -2404.306406 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.05153 -39.83850 -36.87690 -34.32186 -33.41213 -30.31490 -29.58513 -27.44079 -26.72270 -23.24052 -22.64663 -21.24859 -19.53784 -18.63636 -17.23985 -16.89568 -16.26325 -16.18225 -15.66975 -15.40148 -15.26831 -14.30067 -13.88645 -13.52195 -13.47730 -13.32999 -13.05278 -12.76483 -12.74868 -12.13240 -11.98886 -11.82846 -11.25371 -10.85570 -9.95173 -9.05932 -8.46409 -8.17239 -6.12085 0.48277 0.81615 1.35274 1.44097 1.54597 1.89837 2.03677 2.20570 2.87033 3.24395 3.51930 4.03511 4.07461 4.18180 4.39717 4.44601 4.56094 4.71113 4.77731 4.83395 4.90039 5.12751 5.18664 5.35880 5.67098 5.79117 5.86678 5.95334 6.07676 6.40964 6.63182 6.98456 7.82417 8.77478 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.050258 B = 0.007891 C = 0.006852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.995152 B = 3547.503683 C = 4085.483146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.488 5.488 3 C 0.048 3.952 4 C -0.224 4.224 5 C -0.201 4.201 6 C 0.126 3.874 7 C -0.206 4.206 8 C -0.047 4.047 9 C -0.293 4.293 10 C 0.152 3.848 11 O -0.224 6.224 12 C -0.413 4.413 13 H 0.102 0.898 14 C -0.024 4.024 15 N -0.920 5.920 16 Si 1.022 2.978 17 H -0.251 1.251 18 H -0.267 1.267 19 H -0.268 1.268 20 H 0.080 0.920 21 H 0.089 0.911 22 H 0.107 0.893 23 H 0.212 0.788 24 H 0.123 0.877 25 H 0.148 0.852 26 H 0.152 0.848 27 H 0.118 0.882 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.010 -1.481 0.027 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.172 5.172 3 C -0.076 4.076 4 C -0.249 4.249 5 C -0.207 4.207 6 C 0.018 3.982 7 C -0.228 4.228 8 C -0.066 4.066 9 C -0.314 4.314 10 C 0.100 3.900 11 O -0.130 6.130 12 C -0.490 4.490 13 H 0.119 0.881 14 C -0.221 4.221 15 N -0.558 5.558 16 Si 0.841 3.159 17 H -0.174 1.174 18 H -0.192 1.192 19 H -0.192 1.192 20 H 0.098 0.902 21 H 0.107 0.893 22 H 0.126 0.874 23 H 0.228 0.772 24 H 0.141 0.859 25 H 0.166 0.834 26 H 0.170 0.830 27 H 0.136 0.864 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.111 -1.073 0.020 15.149 hybrid contribution 1.209 -0.260 0.026 1.236 sum -13.903 -1.333 0.046 13.966 Atomic orbital electron populations 1.22225 0.74184 1.05771 1.04141 1.44051 1.07318 1.03095 1.62758 1.22131 0.88797 0.92481 1.04194 1.21716 0.97364 0.92534 1.13314 1.18859 0.91901 0.94262 1.15628 1.18157 0.88265 0.89614 1.02146 1.19934 1.00112 0.88041 1.14682 1.20804 0.90268 1.00004 0.95488 1.20960 0.98489 0.93909 1.17993 1.19408 0.84246 0.93146 0.93191 1.83894 1.11696 1.36989 1.80434 1.21930 0.86113 0.88676 1.52235 0.88091 1.26647 0.99398 1.00256 0.95807 1.70226 1.18737 1.18209 1.48607 0.84488 0.76210 0.76638 0.78565 1.17421 1.19196 1.19248 0.90190 0.89270 0.87417 0.77189 0.85883 0.83444 0.83034 0.86442 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 11.03 127.77 1.41 2.68 15 2 N -0.49 -14.65 3.18 -539.22 -1.71 -16.36 15 3 C 0.05 1.51 11.29 83.01 0.94 2.44 15 4 C -0.22 -9.74 11.08 23.49 0.26 -9.48 15 5 C -0.20 -9.87 6.32 -20.11 -0.13 -10.00 15 6 C 0.13 4.90 6.80 39.01 0.27 5.17 15 7 C -0.21 -7.09 9.94 22.40 0.22 -6.86 15 8 C -0.05 -1.73 10.00 22.27 0.22 -1.51 15 9 C -0.29 -13.99 9.16 22.40 0.21 -13.78 15 10 C 0.15 8.40 6.68 22.79 0.15 8.55 15 11 O -0.22 -14.49 9.76 -21.38 -0.21 -14.70 15 12 C -0.41 -25.39 9.49 67.91 0.64 -24.74 15 13 H 0.10 5.73 5.21 -2.91 -0.02 5.71 15 14 C -0.02 -1.41 5.49 84.82 0.47 -0.94 15 15 N -0.92 -58.34 13.67 21.61 0.30 -58.05 15 16 Si 1.02 44.37 29.55 68.60 2.03 46.40 15 17 H -0.25 -10.08 7.11 99.48 0.71 -9.37 15 18 H -0.27 -11.05 7.11 99.48 0.71 -10.34 15 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 20 H 0.08 1.11 8.14 -2.39 -0.02 1.09 15 21 H 0.09 1.30 8.10 -2.39 -0.02 1.28 15 22 H 0.11 1.17 8.13 -2.39 -0.02 1.15 15 23 H 0.21 4.23 8.06 -2.91 -0.02 4.20 15 24 H 0.12 5.61 8.06 -2.91 -0.02 5.59 15 25 H 0.15 3.71 8.06 -2.91 -0.02 3.68 15 26 H 0.15 4.30 8.06 -2.91 -0.02 4.28 15 27 H 0.12 5.64 5.63 -2.91 -0.02 5.62 15 28 H 0.27 15.72 8.31 -92.70 -0.77 14.95 15 Total: -1.00 -79.96 250.54 6.22 -73.73 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 1.17 Total: 17.46 kcal Atomic # 6 Polarization: -53.14 SS G_CDS: 4.66 Total: -48.48 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -1.42 Total: -74.41 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.21 Total: -14.70 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -79.96 6.22 -73.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259814939.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.000 kcal (2) G-P(sol) polarization free energy of solvation -79.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds