Wall clock time and date at job start Mon Mar 30 2020 02:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 C 1.50698 * 109.46561 * 119.99601 * 2 1 3 13 13 C 1.34205 * 126.91847 * 60.02870 * 12 2 1 14 14 O 1.34422 * 110.16525 * 179.97438 * 13 12 2 15 15 C 1.34636 * 110.90514 * 359.97438 * 14 13 12 16 16 C 1.38718 * 134.44508 * 180.02562 * 15 14 13 17 17 N 1.31791 * 120.32317 * 179.28722 * 16 15 14 18 18 C 1.32229 * 122.59210 * 0.61750 * 17 16 15 19 19 C 1.36763 * 121.19991 * 359.58092 * 18 17 16 20 20 C 1.39611 * 118.65635 * 0.03046 * 19 18 17 21 21 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 22 22 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 23 23 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 24 24 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 25 25 H 1.07994 * 124.91706 * 359.95574 * 13 12 2 26 26 H 1.07997 * 119.83696 * 359.96507 * 16 15 14 27 27 H 1.08003 * 119.40187 * 179.61161 * 18 17 16 28 28 H 1.07999 * 120.67750 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 3.1582 -2.2790 -3.6035 10 1 1.1769 -1.5865 -4.8186 11 1 3.1508 -0.1779 -4.8137 12 6 2.0322 -0.7103 1.2305 13 6 1.7955 -1.9846 1.5788 14 8 2.4074 -2.2685 2.7415 15 6 3.0732 -1.1955 3.2086 16 6 3.8494 -0.9470 4.3311 17 7 4.3968 0.2381 4.5124 18 6 4.2314 1.2367 3.6616 19 6 3.4795 1.0857 2.5293 20 6 2.8820 -0.1518 2.2825 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 0.7043 1.1577 -3.4845 25 1 1.1994 -2.6810 1.0078 26 1 4.0148 -1.7316 5.0545 27 1 4.6991 2.1889 3.8643 28 1 3.3503 1.9069 1.8400 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259901533.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:48 Heat of formation + Delta-G solvation = 12.523601 kcal Electronic energy + Delta-G solvation = -13943.680989 eV Core-core repulsion = 11539.212239 eV Total energy + Delta-G solvation = -2404.468750 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.50790 -39.90139 -36.89692 -34.20716 -32.47193 -31.63733 -30.00440 -27.24094 -25.05687 -24.04818 -23.86462 -20.79490 -18.79123 -18.51764 -17.87835 -17.12565 -16.87332 -16.33627 -15.64125 -15.21513 -14.72406 -14.57078 -14.33896 -13.66005 -13.28779 -12.91915 -12.86913 -12.70062 -12.29498 -12.11392 -11.68456 -11.39681 -10.91590 -10.78600 -10.50620 -9.92697 -9.20541 -8.12811 -6.27628 -0.17244 0.21136 1.39968 1.42342 1.50531 1.56017 1.79532 2.42182 2.78815 3.15013 3.42428 3.59426 3.61229 4.06772 4.15151 4.49715 4.59571 4.67304 4.86401 4.95423 5.03456 5.15871 5.21831 5.46633 5.48132 5.56905 5.82196 6.02798 6.13425 6.30314 6.80455 6.88171 7.41283 8.91789 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.040773 B = 0.008121 C = 0.007863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.558803 B = 3446.894906 C = 3560.267941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.106 3.894 3 H 0.003 0.997 4 C -0.525 4.525 5 H 0.053 0.947 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.277 1.277 11 H -0.283 1.283 12 C -0.160 4.160 13 C 0.008 3.992 14 O -0.189 6.189 15 C -0.026 4.026 16 C 0.135 3.865 17 N -0.473 5.473 18 C 0.067 3.933 19 C -0.132 4.132 20 C -0.116 4.116 21 H 0.021 0.979 22 H 0.062 0.938 23 H 0.039 0.961 24 H 0.263 0.737 25 H 0.230 0.770 26 H 0.197 0.803 27 H 0.192 0.808 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -2.816 9.423 10.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.087 3.913 3 H 0.021 0.979 4 C -0.563 4.563 5 H 0.071 0.929 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.781 3.219 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.209 1.209 12 C -0.162 4.162 13 C -0.058 4.058 14 O -0.089 6.089 15 C -0.076 4.076 16 C -0.029 4.029 17 N -0.183 5.183 18 C -0.083 4.083 19 C -0.152 4.152 20 C -0.124 4.124 21 H 0.040 0.960 22 H 0.081 0.919 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.246 0.754 26 H 0.214 0.786 27 H 0.209 0.791 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.480 -2.751 10.135 11.064 hybrid contribution -0.456 -0.109 -2.114 2.165 sum 3.025 -2.860 8.022 9.037 Atomic orbital electron populations 1.21652 0.96861 0.99740 0.99754 1.17097 0.92984 0.93547 0.87654 0.97879 1.21416 1.31198 1.12684 0.90984 0.92919 1.25692 0.95127 0.95607 1.01730 1.70008 1.37215 1.24071 1.24118 0.85542 0.78242 0.78641 0.79466 1.19308 1.20251 1.20906 1.21790 1.01129 0.95447 0.97790 1.24212 0.98890 0.97217 0.85434 1.83930 1.55019 1.35290 1.34629 1.21250 1.00794 0.86527 0.99030 1.22306 0.91964 0.95653 0.92934 1.67801 1.20407 0.99822 1.30276 1.22649 0.96872 0.98932 0.89798 1.21531 0.97932 0.96261 0.99490 1.20640 0.99711 0.96222 0.95777 0.95969 0.91884 0.94191 0.92785 0.75371 0.78592 0.79077 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.86 71.98 0.64 -5.11 15 2 C 0.11 5.26 2.71 -12.29 -0.03 5.22 15 3 H 0.00 0.17 8.14 -2.39 -0.02 0.15 15 4 C -0.52 -27.98 8.42 25.60 0.22 -27.77 15 5 H 0.05 2.79 7.72 -2.92 -0.02 2.77 15 6 C 0.02 0.94 5.31 84.66 0.45 1.39 15 7 N -0.91 -51.15 11.31 21.45 0.24 -50.91 15 8 Si 0.96 42.37 29.54 68.60 2.03 44.40 15 9 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 12 C -0.16 -6.90 5.01 -18.68 -0.09 -7.00 15 13 C 0.01 0.29 11.45 66.90 0.77 1.06 15 14 O -0.19 -6.61 10.57 -6.92 -0.07 -6.68 15 15 C -0.03 -0.90 7.47 23.02 0.17 -0.73 15 16 C 0.14 3.87 11.24 84.81 0.95 4.83 15 17 N -0.47 -13.86 10.32 -196.36 -2.03 -15.89 15 18 C 0.07 1.91 11.12 84.29 0.94 2.84 15 19 C -0.13 -4.57 10.12 22.26 0.23 -4.35 15 20 C -0.12 -4.58 6.45 -20.21 -0.13 -4.71 15 21 H 0.02 0.93 8.14 -2.39 -0.02 0.91 15 22 H 0.06 3.28 6.06 -2.38 -0.01 3.26 15 23 H 0.04 1.72 8.03 -2.39 -0.02 1.70 15 24 H 0.26 13.94 8.31 -92.71 -0.77 13.17 15 25 H 0.23 7.23 8.06 -2.91 -0.02 7.20 15 26 H 0.20 4.00 8.06 -2.91 -0.02 3.97 15 27 H 0.19 3.94 8.06 -2.91 -0.02 3.92 15 28 H 0.14 4.61 8.06 -2.91 -0.02 4.59 15 Total: -1.00 -61.09 249.83 5.43 -55.66 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 1.16 Total: 7.73 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 4.10 Total: -34.31 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -1.78 Total: -66.79 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.07 Total: -6.68 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -61.09 5.43 -55.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259901533.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.181 kcal (2) G-P(sol) polarization free energy of solvation -61.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds