Wall clock time and date at job start Mon Mar 30 2020 02:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34268 * 126.49057 * 2 1 4 4 N 1.36896 * 109.92439 * 180.02562 * 3 2 1 5 5 H 0.97001 * 125.07174 * 179.97438 * 4 3 2 6 6 C 1.37725 * 109.85834 * 0.02562 * 4 3 2 7 7 C 1.39005 * 133.43701 * 180.32876 * 6 4 3 8 8 C 1.38412 * 119.72783 * 180.18010 * 7 6 4 9 9 O 1.35747 * 119.74663 * 179.72286 * 8 7 6 10 10 C 1.34813 * 116.99734 * 185.29546 * 9 8 7 11 11 H 1.08000 * 120.00866 * 354.94774 * 10 9 8 12 12 C 1.38621 * 119.99274 * 174.67202 * 10 9 8 13 13 N 1.31585 * 119.99797 * 180.27672 * 12 10 9 14 14 Si 1.86795 * 120.00443 * 0.27531 * 12 10 9 15 15 H 1.48500 * 109.47205 * 89.99812 * 14 12 10 16 16 H 1.48498 * 109.47449 * 209.99903 * 14 12 10 17 17 H 1.48505 * 109.46993 * 330.00209 * 14 12 10 18 18 C 1.39453 * 120.50980 * 359.45496 * 8 7 6 19 19 C 1.36477 * 120.46450 * 0.26977 * 18 8 7 20 20 C 1.39735 * 119.85348 * 0.02562 * 19 18 8 21 21 H 1.09004 * 109.46418 * 269.99261 * 1 2 3 22 22 H 1.08996 * 109.47196 * 29.99621 * 1 2 3 23 23 H 1.08999 * 109.47037 * 149.99880 * 1 2 3 24 24 H 1.08000 * 125.03649 * 0.03169 * 3 2 1 25 25 H 1.08003 * 120.13376 * 359.92553 * 7 6 4 26 26 H 0.96999 * 119.99774 * 179.97438 * 13 12 10 27 27 H 1.08003 * 119.77043 * 180.29738 * 18 8 7 28 28 H 1.07994 * 120.07496 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3056 1.0795 0.0000 4 7 3.6177 0.6891 -0.0006 5 1 4.3783 1.2912 -0.0010 6 6 3.6968 -0.6858 -0.0015 7 6 4.7593 -1.5820 0.0034 8 6 4.5091 -2.9433 -0.0032 9 8 5.5465 -3.8189 -0.0041 10 6 5.2431 -5.1271 -0.1214 11 1 4.2105 -5.4437 -0.1271 12 6 6.2564 -6.0655 -0.2405 13 7 5.9602 -7.3420 -0.3605 14 14 8.0423 -5.5181 -0.2308 15 1 8.5506 -5.5120 1.1645 16 1 8.8522 -6.4565 -1.0485 17 1 8.1439 -4.1505 -0.8005 18 6 3.1995 -3.4225 -0.0032 19 6 2.1455 -2.5554 -0.0024 20 6 2.3782 -1.1776 -0.0020 21 1 -0.3632 -0.0001 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.9634 2.1038 0.0005 25 1 5.7760 -1.2176 0.0081 26 1 6.6692 -7.9986 -0.4443 27 1 3.0179 -4.4871 -0.0035 28 1 1.1338 -2.9333 -0.0029 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259933072.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:55 Heat of formation + Delta-G solvation = 26.405116 kcal Electronic energy + Delta-G solvation = -13664.795202 eV Core-core repulsion = 11260.928400 eV Total energy + Delta-G solvation = -2403.866802 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.64284 -38.38679 -35.01139 -32.61385 -32.23998 -29.41155 -28.04417 -26.15986 -24.89103 -22.34755 -20.77040 -18.98006 -18.23752 -17.05849 -16.56022 -15.26489 -14.65597 -14.29641 -13.73592 -13.49441 -13.18392 -13.11313 -12.65829 -12.51035 -12.24955 -12.00564 -11.93194 -11.03223 -11.01131 -10.57798 -10.34032 -10.09521 -9.34661 -8.98486 -8.61779 -7.37504 -6.87229 -6.38367 -4.04496 1.84427 2.41523 3.14215 3.25568 3.27189 3.41827 3.55844 4.26206 4.58981 4.92470 5.14359 5.16091 5.40082 5.53098 5.62251 5.88936 5.94923 6.11159 6.17287 6.23147 6.38157 6.44318 6.75561 7.06073 7.21591 7.32278 7.39420 7.72114 7.83951 8.00396 8.10109 8.96878 9.59402 10.69357 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.057548 B = 0.007172 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.429677 B = 3902.899938 C = 4371.158028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.161 4.161 3 C 0.012 3.988 4 N -0.603 5.603 5 H 0.409 0.591 6 C 0.148 3.852 7 C -0.232 4.232 8 C 0.186 3.814 9 O -0.217 6.217 10 C -0.389 4.389 11 H 0.108 0.892 12 C 0.063 3.937 13 N -0.881 5.881 14 Si 0.905 3.095 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.260 1.260 18 C -0.219 4.219 19 C -0.036 4.036 20 C -0.175 4.175 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.158 0.842 25 H 0.114 0.886 26 H 0.279 0.721 27 H 0.137 0.863 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.017 13.569 0.527 14.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.169 4.169 3 C -0.112 4.112 4 N -0.208 5.208 5 H 0.244 0.756 6 C 0.041 3.959 7 C -0.255 4.255 8 C 0.133 3.867 9 O -0.122 6.122 10 C -0.465 4.465 11 H 0.125 0.875 12 C -0.140 4.140 13 N -0.520 5.520 14 Si 0.731 3.269 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.184 1.184 18 C -0.239 4.239 19 C -0.054 4.054 20 C -0.179 4.179 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.175 0.825 25 H 0.132 0.868 26 H 0.089 0.911 27 H 0.154 0.846 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.626 13.451 0.517 14.590 hybrid contribution 1.117 0.299 -0.001 1.156 sum -4.509 13.751 0.516 14.480 Atomic orbital electron populations 1.20048 0.90393 1.01599 1.01098 1.20176 0.94605 0.91379 1.10709 1.21266 0.82532 0.98306 1.09053 1.41549 1.07080 1.04950 1.67182 0.75580 1.17686 0.94756 0.82573 1.00907 1.18654 0.96606 0.89491 1.20788 1.18603 0.87168 0.88713 0.92240 1.83550 1.30718 1.17478 1.80408 1.20777 0.96638 0.77544 1.51527 0.87492 1.24446 0.99784 0.94077 0.95677 1.69658 1.34310 1.00164 1.47820 0.86187 0.82738 0.79352 0.78660 1.19931 1.20860 1.18397 1.20974 0.91885 1.00982 1.10026 1.19962 0.98040 0.90701 0.96740 1.18804 0.91736 0.92890 1.14449 0.92374 0.92559 0.92094 0.82487 0.86794 0.91108 0.84556 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.41 36.01 0.37 -0.51 15 2 C -0.16 -2.48 6.32 -102.70 -0.65 -3.13 15 3 C 0.01 0.17 11.74 -16.69 -0.20 -0.03 15 4 N -0.60 -8.86 6.08 -10.63 -0.06 -8.92 15 5 H 0.41 4.63 8.96 -40.82 -0.37 4.27 15 6 C 0.15 2.79 7.27 -83.99 -0.61 2.18 15 7 C -0.23 -4.88 10.01 -39.23 -0.39 -5.27 15 8 C 0.19 4.42 6.64 -39.07 -0.26 4.16 15 9 O -0.22 -5.80 8.57 0.11 0.00 -5.80 15 10 C -0.39 -11.03 9.94 30.87 0.31 -10.73 15 11 H 0.11 3.08 5.40 -52.49 -0.28 2.79 15 12 C 0.06 1.78 5.49 -17.52 -0.10 1.68 15 13 N -0.88 -25.57 13.96 55.48 0.77 -24.80 15 14 Si 0.90 21.83 28.61 -169.99 -4.86 16.96 15 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 17 H -0.26 -6.30 7.11 56.52 0.40 -5.89 15 18 C -0.22 -4.86 9.09 -39.76 -0.36 -5.22 15 19 C -0.04 -0.69 10.04 -39.66 -0.40 -1.09 15 20 C -0.17 -3.30 6.35 -105.08 -0.67 -3.97 15 21 H 0.06 0.64 8.14 -51.93 -0.42 0.21 15 22 H 0.06 0.55 8.14 -51.93 -0.42 0.12 15 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.16 1.49 8.06 -52.49 -0.42 1.07 15 25 H 0.11 2.23 8.06 -52.48 -0.42 1.81 15 26 H 0.28 7.47 8.31 -40.82 -0.34 7.14 15 27 H 0.14 3.10 5.59 -52.48 -0.29 2.81 15 28 H 0.11 1.86 8.06 -52.49 -0.42 1.44 15 LS Contribution 248.72 15.07 3.75 3.75 Total: -1.00 -30.94 248.72 -5.97 -36.91 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -2.61 Total: 3.81 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -2.95 Total: -21.92 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.71 Total: -33.72 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: 0.00 Total: -5.80 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.86 Total: 16.96 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.94 -5.97 -36.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259933072.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.316 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds