Wall clock time and date at job start Mon Mar 30 2020 02:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46896 * 111.00148 * 2 1 4 4 C 1.53007 * 109.47057 * 293.95310 * 3 2 1 5 5 C 1.50696 * 109.46713 * 180.02562 * 4 3 2 6 6 H 1.08000 * 120.00645 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99821 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99711 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00018 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47346 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46853 * 120.00218 * 9 7 5 12 12 H 1.48497 * 109.47144 * 239.99962 * 9 7 5 13 13 C 1.46905 * 110.99815 * 123.95734 * 2 1 3 14 14 C 1.53044 * 113.19338 * 72.01963 * 13 2 1 15 15 S 1.81426 * 89.88656 * 148.15455 * 14 13 2 16 16 O 1.42104 * 109.46569 * 226.19387 * 15 14 13 17 17 C 1.53042 * 113.14953 * 172.41608 * 13 2 1 18 18 H 1.09001 * 109.47152 * 302.57577 * 1 2 3 19 19 H 1.09000 * 109.47400 * 62.57158 * 1 2 3 20 20 H 1.09000 * 109.47553 * 182.57572 * 1 2 3 21 21 H 1.08996 * 109.47391 * 53.95874 * 3 2 1 22 22 H 1.09006 * 109.47143 * 173.95883 * 3 2 1 23 23 H 1.09004 * 109.46899 * 300.00250 * 4 3 2 24 24 H 1.08996 * 109.46710 * 60.00373 * 4 3 2 25 25 H 0.97000 * 120.00240 * 180.02562 * 8 7 5 26 26 H 1.08995 * 112.49145 * 302.19478 * 13 2 1 27 27 H 1.08990 * 113.14819 * 263.41354 * 14 13 2 28 28 H 1.08997 * 113.14366 * 32.89913 * 14 13 2 29 29 H 1.08998 * 113.14856 * 327.06591 * 17 13 2 30 30 H 1.09000 * 113.15068 * 96.54512 * 17 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1721 3.4640 -1.3185 6 1 2.7201 3.8321 -0.4638 7 6 1.9662 4.2816 -2.4096 8 7 1.2977 3.8339 -3.4498 9 14 2.6358 6.0254 -2.4096 10 1 3.3448 6.2835 -1.1306 11 1 3.5819 6.1923 -3.5419 12 1 1.5134 6.9866 -2.5565 13 6 1.9954 -0.7661 1.1376 14 6 1.8059 -2.2772 0.9860 15 16 3.3390 -2.5589 1.9145 16 8 4.1293 -3.5287 1.2406 17 6 3.5132 -0.9547 1.0852 18 1 -0.3633 0.5533 0.8660 19 1 -0.3634 0.4734 -0.9121 20 1 -0.3634 -1.0266 0.0462 21 1 1.5612 1.9273 0.8309 22 1 3.0797 1.3443 0.1082 23 1 2.0658 1.5014 -2.1492 24 1 0.5472 2.0845 -1.4265 25 1 1.1531 4.4088 -4.2176 26 1 1.6438 -0.3841 2.0960 27 1 0.9198 -2.6514 1.4984 28 1 1.8636 -2.6145 -0.0488 29 1 3.8999 -1.0371 0.0694 30 1 4.0570 -0.2213 1.6806 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260022796.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:54 Heat of formation + Delta-G solvation = -18.423647 kcal Electronic energy + Delta-G solvation = -12759.548106 eV Core-core repulsion = 10489.181333 eV Total energy + Delta-G solvation = -2270.366772 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.08835 -35.72134 -34.05949 -32.50242 -29.37877 -26.66991 -25.19437 -23.91367 -20.79499 -19.71898 -17.33539 -16.58613 -15.75448 -15.51314 -14.92083 -14.49630 -14.08613 -13.65887 -13.40450 -12.69889 -12.64894 -12.19112 -12.04672 -11.28025 -11.15685 -11.04462 -10.95717 -10.73363 -10.51340 -9.89317 -9.69294 -9.40815 -9.12353 -8.72980 -8.34140 -7.78545 -6.00179 -4.02694 1.84004 2.15196 3.30538 3.37920 3.41540 3.68867 4.40673 4.57214 4.61633 5.04966 5.23733 5.35838 5.53261 5.60643 5.77449 5.91473 6.01230 6.18590 6.26343 6.45058 6.51764 6.97121 7.47241 7.55830 7.78426 7.89466 8.07618 8.42835 9.04955 9.61026 11.11345 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.056133 B = 0.005938 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.697869 B = 4714.624825 C = 4968.882570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.528 5.528 3 C 0.062 3.938 4 C 0.027 3.973 5 C -0.521 4.521 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.102 3.898 14 C -0.422 4.422 15 S 1.218 4.782 16 O -0.861 6.861 17 C -0.420 4.420 18 H 0.020 0.980 19 H 0.077 0.923 20 H 0.056 0.944 21 H 0.021 0.979 22 H 0.063 0.937 23 H 0.023 0.977 24 H 0.017 0.983 25 H 0.260 0.740 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 -9.626 14.198 17.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.253 5.253 3 C -0.065 4.065 4 C -0.011 4.011 5 C -0.560 4.560 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.009 4.009 14 C -0.560 4.560 15 S 1.417 4.583 16 O -0.856 6.856 17 C -0.559 4.559 18 H 0.039 0.961 19 H 0.096 0.904 20 H 0.075 0.925 21 H 0.039 0.961 22 H 0.081 0.919 23 H 0.041 0.959 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.488 -10.683 14.373 17.915 hybrid contribution -0.105 1.778 -1.720 2.476 sum 0.383 -8.905 12.653 15.477 Atomic orbital electron populations 1.22333 0.87786 1.00479 1.01514 1.62332 1.07659 1.16191 1.39080 1.22351 0.98895 0.84818 1.00387 1.19102 0.96928 0.94070 0.90985 1.21226 1.35063 0.97757 1.01961 0.92737 1.25004 0.95295 0.98508 0.95564 1.69982 1.40832 1.36373 1.06079 0.86537 0.78739 0.84728 0.77995 1.19763 1.20996 1.21013 1.21854 0.92513 0.92021 0.94544 1.28226 1.15245 1.01598 1.10955 1.71009 0.88299 0.85373 1.13571 1.93114 1.62400 1.52715 1.77414 1.28204 1.00883 1.16158 1.10611 0.96132 0.90407 0.92501 0.96095 0.91858 0.95873 0.96460 0.93043 0.90649 0.88062 0.86844 0.86597 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.22 60.06 0.55 1.00 16 2 N -0.53 -9.47 4.69 -247.50 -1.16 -10.63 16 3 C 0.06 1.30 4.80 -3.82 -0.02 1.28 16 4 C 0.03 0.70 4.90 -27.88 -0.14 0.56 16 5 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 6 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.10 1.34 2.89 -67.66 -0.20 1.14 16 14 C -0.42 -4.85 6.99 37.18 0.26 -4.59 16 15 S 1.22 11.65 16.21 -107.50 -1.74 9.91 16 16 O -0.86 -14.49 18.14 -35.23 -0.64 -15.13 16 17 C -0.42 -5.36 6.52 37.18 0.24 -5.11 16 18 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 19 H 0.08 1.45 6.59 -51.93 -0.34 1.10 16 20 H 0.06 0.79 7.53 -51.93 -0.39 0.40 16 21 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 22 H 0.06 1.31 7.11 -51.93 -0.37 0.94 16 23 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.02 0.47 6.61 -51.93 -0.34 0.13 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 29 H 0.12 1.89 8.14 -51.93 -0.42 1.46 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 262.03 15.07 3.95 3.95 Total: -1.00 -36.82 262.03 -7.95 -44.77 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -4.37 Total: -3.83 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 0.29 Total: -19.30 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.42 Total: -37.05 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.64 Total: -15.13 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 11.65 SS G_CDS: -1.74 Total: 9.91 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -36.82 -7.95 -44.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022796.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.344 kcal (2) G-P(sol) polarization free energy of solvation -36.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds