Wall clock time and date at job start Mon Mar 30 2020 03:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00040 * 2 1 4 4 H 1.48493 * 109.46927 * 269.99708 * 3 2 1 5 5 H 1.48502 * 109.47194 * 29.99916 * 3 2 1 6 6 H 1.48498 * 109.46942 * 149.99854 * 3 2 1 7 7 C 1.37875 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99677 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99971 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46719 * 180.02562 * 9 7 2 11 11 N 1.30837 * 125.39196 * 263.59021 * 10 9 7 12 12 C 1.33488 * 109.91937 * 180.02562 * 11 10 9 13 13 C 1.37980 * 107.62831 * 0.02562 * 12 11 10 14 14 C 1.40998 * 133.65803 * 179.97438 * 13 12 11 15 15 C 1.36038 * 119.32032 * 179.97438 * 14 13 12 16 16 C 1.40421 * 119.84041 * 0.02562 * 15 14 13 17 17 C 1.35815 * 120.50547 * 0.02562 * 16 15 14 18 18 N 1.38452 * 119.79604 * 179.97438 * 17 16 15 19 19 N 1.35870 * 125.39682 * 83.60121 * 10 9 7 20 20 H 0.96997 * 119.99608 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47428 * 59.99920 * 9 7 2 22 22 H 1.08995 * 109.47160 * 299.99411 * 9 7 2 23 23 H 1.07998 * 126.18123 * 180.02562 * 12 11 10 24 24 H 1.07995 * 120.33361 * 0.02562 * 14 13 12 25 25 H 1.07996 * 120.07740 * 180.29823 * 15 14 13 26 26 H 1.07998 * 119.74597 * 179.97438 * 16 15 14 27 27 H 0.96998 * 119.99861 * 170.35937 * 18 17 16 28 28 H 0.96997 * 119.99491 * 350.35957 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0137 -2.6150 0.0010 11 7 4.3781 -3.2900 1.0609 12 6 4.7700 -4.5159 0.7068 13 6 4.6436 -4.6155 -0.6635 14 6 4.8988 -5.6452 -1.5923 15 6 4.6639 -5.4237 -2.9138 16 6 4.1727 -4.1781 -3.3369 17 6 3.9302 -3.1906 -2.4366 18 7 3.4465 -1.9679 -2.8700 19 7 4.1601 -3.3979 -1.0998 20 1 -0.4849 0.8401 -0.0004 21 1 3.8746 -0.6801 0.8911 22 1 3.8752 -0.6806 -0.8888 23 1 5.1223 -5.2898 1.3727 24 1 5.2761 -6.6002 -1.2578 25 1 4.8505 -6.2054 -3.6352 26 1 3.9871 -4.0037 -4.3865 27 1 3.1406 -1.3112 -2.2251 28 1 3.4136 -1.7681 -3.8186 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260128381.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:35 Heat of formation + Delta-G solvation = 86.245809 kcal Electronic energy + Delta-G solvation = -14208.100245 eV Core-core repulsion = 11839.121080 eV Total energy + Delta-G solvation = -2368.979164 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.13333 -37.32168 -34.91097 -33.08956 -31.72057 -30.55410 -28.98165 -26.23827 -23.01041 -22.92587 -21.78465 -19.97876 -17.06476 -17.05353 -16.86763 -15.94162 -15.25222 -15.02909 -14.43466 -14.34567 -13.47021 -13.07663 -12.42253 -12.15517 -11.94807 -11.68029 -11.41569 -10.84693 -10.78556 -10.44912 -10.10364 -9.60714 -9.51721 -9.42732 -8.79501 -8.18803 -6.38674 -6.26275 -4.30113 1.56059 1.88015 2.94431 3.11177 3.23929 3.26618 3.78831 4.01146 4.14088 4.21874 5.01193 5.11178 5.24099 5.32343 5.56382 5.60845 6.01220 6.08148 6.30220 6.39453 6.54856 6.75694 6.84299 6.99627 7.27139 7.34043 7.52174 7.71816 8.11412 8.28506 8.67940 8.78095 9.29188 10.85240 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.038606 B = 0.009968 C = 0.008828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.107060 B = 2808.247844 C = 3170.977798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.870 3.130 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.527 4.527 8 H 0.075 0.925 9 C 0.061 3.939 10 C 0.222 3.778 11 N -0.457 5.457 12 C -0.047 4.047 13 C 0.019 3.981 14 C -0.152 4.152 15 C -0.070 4.070 16 C -0.282 4.282 17 C 0.419 3.581 18 N -0.859 5.859 19 N -0.393 5.393 20 H 0.268 0.732 21 H 0.058 0.942 22 H 0.025 0.975 23 H 0.172 0.828 24 H 0.133 0.867 25 H 0.124 0.876 26 H 0.134 0.866 27 H 0.422 0.578 28 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 -5.654 -7.309 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.696 3.304 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.565 4.565 8 H 0.093 0.907 9 C 0.022 3.978 10 C -0.034 4.034 11 N -0.171 5.171 12 C -0.198 4.198 13 C -0.088 4.088 14 C -0.173 4.173 15 C -0.091 4.091 16 C -0.310 4.310 17 C 0.209 3.791 18 N -0.406 5.406 19 N -0.072 5.072 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.042 0.958 23 H 0.189 0.811 24 H 0.151 0.849 25 H 0.142 0.858 26 H 0.152 0.848 27 H 0.259 0.741 28 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 8.691 -5.094 -6.420 11.945 hybrid contribution 0.058 0.818 -0.937 1.245 sum 8.748 -4.276 -7.357 12.204 Atomic orbital electron populations 1.69885 1.06226 1.27351 1.48875 1.24953 0.94789 0.98855 0.94096 0.86917 0.80864 0.83740 0.78853 1.19951 1.20593 1.18482 1.20841 0.87578 0.95062 1.53057 0.90657 1.18370 0.97664 0.83411 0.98383 1.24013 1.03629 0.97042 0.78760 1.69970 1.15000 1.04860 1.27249 1.22378 1.10572 0.96294 0.90564 1.19456 1.07495 0.86418 0.95463 1.20056 1.07690 0.97769 0.91816 1.20523 0.97469 0.95906 0.95240 1.19741 1.19109 0.93906 0.98252 1.17351 0.92162 0.88196 0.81346 1.42868 1.70214 1.15677 1.11850 1.43018 1.45269 1.13632 1.05262 0.92194 0.92361 0.95769 0.81067 0.84920 0.85796 0.84846 0.74079 0.76031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.96 55.43 0.77 -25.11 15 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 15 3 Si 0.87 19.85 27.47 -169.99 -4.67 15.19 15 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 6 H -0.26 -5.78 6.54 56.52 0.37 -5.41 15 7 C -0.53 -14.41 8.79 -34.44 -0.30 -14.71 15 8 H 0.08 2.35 7.98 -52.48 -0.42 1.93 15 9 C 0.06 1.46 3.74 -29.03 -0.11 1.35 15 10 C 0.22 5.21 7.18 -154.37 -1.11 4.10 15 11 N -0.46 -10.68 11.19 -9.92 -0.11 -10.79 15 12 C -0.05 -0.94 12.01 -16.93 -0.20 -1.14 15 13 C 0.02 0.37 6.80 -84.10 -0.57 -0.20 15 14 C -0.15 -2.35 10.11 -39.33 -0.40 -2.75 15 15 C -0.07 -0.99 10.06 -39.55 -0.40 -1.39 15 16 C -0.28 -4.30 9.78 -39.63 -0.39 -4.69 15 17 C 0.42 7.68 7.66 -152.47 -1.17 6.51 15 18 N -0.86 -14.44 8.88 31.26 0.28 -14.16 15 19 N -0.39 -8.26 2.97 -57.24 -0.17 -8.43 15 20 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 21 H 0.06 1.42 7.20 -51.93 -0.37 1.04 15 22 H 0.02 0.54 5.62 -51.93 -0.29 0.24 15 23 H 0.17 2.72 8.06 -52.49 -0.42 2.30 15 24 H 0.13 1.62 8.06 -52.49 -0.42 1.20 15 25 H 0.12 1.32 8.06 -52.49 -0.42 0.90 15 26 H 0.13 1.63 8.06 -52.49 -0.42 1.21 15 27 H 0.42 8.17 4.62 -40.82 -0.19 7.98 15 28 H 0.41 5.18 8.82 -40.82 -0.36 4.82 15 LS Contribution 241.62 15.07 3.64 3.64 Total: -1.00 -31.50 241.62 -7.49 -38.99 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -2.49 Total: 11.59 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -4.74 Total: -10.92 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.77 Total: -58.49 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.67 Total: 15.19 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.50 -7.49 -38.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260128381.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.240 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds