Wall clock time and date at job start Mon Mar 30 2020 03:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00040 * 2 1 4 4 H 1.48493 * 109.46927 * 269.99708 * 3 2 1 5 5 H 1.48502 * 109.47194 * 29.99916 * 3 2 1 6 6 H 1.48498 * 109.46942 * 149.99854 * 3 2 1 7 7 C 1.37875 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99677 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99971 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46719 * 180.02562 * 9 7 2 11 11 N 1.30837 * 125.39196 * 263.59021 * 10 9 7 12 12 C 1.33488 * 109.91937 * 180.02562 * 11 10 9 13 13 C 1.37980 * 107.62831 * 0.02562 * 12 11 10 14 14 C 1.40998 * 133.65803 * 179.97438 * 13 12 11 15 15 C 1.36038 * 119.32032 * 179.97438 * 14 13 12 16 16 C 1.40421 * 119.84041 * 0.02562 * 15 14 13 17 17 C 1.35815 * 120.50547 * 0.02562 * 16 15 14 18 18 N 1.38452 * 119.79604 * 179.97438 * 17 16 15 19 19 N 1.35870 * 125.39682 * 83.60121 * 10 9 7 20 20 H 0.96997 * 119.99608 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47428 * 59.99920 * 9 7 2 22 22 H 1.08995 * 109.47160 * 299.99411 * 9 7 2 23 23 H 1.07998 * 126.18123 * 180.02562 * 12 11 10 24 24 H 1.07995 * 120.33361 * 0.02562 * 14 13 12 25 25 H 1.07996 * 120.07740 * 180.29823 * 15 14 13 26 26 H 1.07998 * 119.74597 * 179.97438 * 16 15 14 27 27 H 0.96998 * 119.99861 * 170.35937 * 18 17 16 28 28 H 0.96997 * 119.99491 * 350.35957 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0137 -2.6150 0.0010 11 7 4.3781 -3.2900 1.0609 12 6 4.7700 -4.5159 0.7068 13 6 4.6436 -4.6155 -0.6635 14 6 4.8988 -5.6452 -1.5923 15 6 4.6639 -5.4237 -2.9138 16 6 4.1727 -4.1781 -3.3369 17 6 3.9302 -3.1906 -2.4366 18 7 3.4465 -1.9679 -2.8700 19 7 4.1601 -3.3979 -1.0998 20 1 -0.4849 0.8401 -0.0004 21 1 3.8746 -0.6801 0.8911 22 1 3.8752 -0.6806 -0.8888 23 1 5.1223 -5.2898 1.3727 24 1 5.2761 -6.6002 -1.2578 25 1 4.8505 -6.2054 -3.6352 26 1 3.9871 -4.0037 -4.3865 27 1 3.1406 -1.3112 -2.2251 28 1 3.4136 -1.7681 -3.8186 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260128381.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:35 Heat of formation + Delta-G solvation = 65.530698 kcal Electronic energy + Delta-G solvation = -14208.998519 eV Core-core repulsion = 11839.121080 eV Total energy + Delta-G solvation = -2369.877439 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.61461 -38.69774 -36.37904 -34.98255 -33.18913 -32.37203 -30.40293 -27.81245 -24.84417 -24.30769 -23.25715 -21.51427 -19.14559 -18.50301 -18.16154 -17.38140 -16.81755 -16.39399 -16.12807 -15.75780 -15.04335 -14.75604 -14.25503 -13.77379 -13.51279 -12.89529 -12.81750 -12.60966 -12.46892 -12.03886 -11.80612 -11.58106 -11.13337 -10.94264 -10.87031 -9.59281 -8.38398 -7.75770 -6.47991 0.26744 0.45715 1.31602 1.38019 1.49157 1.56076 2.18363 2.28209 2.71281 2.80469 2.94214 3.69913 3.84082 4.01457 4.16734 4.48825 4.59927 4.68259 4.72847 4.95794 5.09666 5.25198 5.34506 5.54832 5.70912 5.89430 5.94958 6.14727 6.40525 6.56029 6.81976 7.11746 7.15904 8.78037 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.038606 B = 0.009968 C = 0.008828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.107060 B = 2808.247844 C = 3170.977798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.024 3.976 3 Si 0.943 3.057 4 H -0.248 1.248 5 H -0.280 1.280 6 H -0.251 1.251 7 C -0.526 4.526 8 H 0.018 0.982 9 C 0.074 3.926 10 C 0.167 3.833 11 N -0.487 5.487 12 C -0.075 4.075 13 C 0.020 3.980 14 C -0.160 4.160 15 C -0.058 4.058 16 C -0.258 4.258 17 C 0.373 3.627 18 N -0.861 5.861 19 N -0.396 5.396 20 H 0.272 0.728 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.202 0.798 24 H 0.170 0.830 25 H 0.174 0.826 26 H 0.170 0.830 27 H 0.408 0.592 28 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.773 -6.498 -9.547 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.172 1.172 5 H -0.206 1.206 6 H -0.174 1.174 7 C -0.564 4.564 8 H 0.036 0.964 9 C 0.035 3.965 10 C -0.088 4.088 11 N -0.201 5.201 12 C -0.225 4.225 13 C -0.089 4.089 14 C -0.181 4.181 15 C -0.079 4.079 16 C -0.286 4.286 17 C 0.165 3.835 18 N -0.409 5.409 19 N -0.074 5.074 20 H 0.081 0.919 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.219 0.781 24 H 0.187 0.813 25 H 0.191 0.809 26 H 0.188 0.812 27 H 0.243 0.757 28 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 10.558 -5.946 -8.700 14.916 hybrid contribution -0.531 0.822 -0.375 1.048 sum 10.026 -5.124 -9.074 14.461 Atomic orbital electron populations 1.70037 1.08313 1.28724 1.50407 1.25868 0.95551 1.02981 0.93175 0.85768 0.79431 0.77983 0.80332 1.17165 1.20559 1.17432 1.20798 0.89528 0.92972 1.53114 0.96375 1.18097 0.94922 0.84858 0.98639 1.23654 1.07587 0.97487 0.80101 1.69830 1.15453 1.06539 1.28286 1.22943 1.11742 0.96028 0.91836 1.20164 1.05985 0.86696 0.96048 1.20590 1.07597 0.98081 0.91827 1.21148 0.94812 0.96304 0.95645 1.20430 1.15551 0.93204 0.99447 1.17983 0.94838 0.89831 0.80893 1.42782 1.70487 1.15161 1.12464 1.43120 1.44639 1.13738 1.05899 0.91859 0.93380 0.93657 0.78077 0.81263 0.80908 0.81213 0.75718 0.74047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.63 13.96 21.45 0.30 -56.33 15 2 C 0.02 1.32 5.47 84.65 0.46 1.79 15 3 Si 0.94 41.21 27.47 68.60 1.88 43.10 15 4 H -0.25 -9.75 7.11 99.48 0.71 -9.04 15 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 6 H -0.25 -10.49 6.54 99.48 0.65 -9.84 15 7 C -0.53 -30.17 8.79 25.60 0.22 -29.95 15 8 H 0.02 1.20 7.98 -2.91 -0.02 1.18 15 9 C 0.07 3.65 3.74 29.10 0.11 3.76 15 10 C 0.17 8.10 7.18 137.77 0.99 9.09 15 11 N -0.49 -23.53 11.19 -185.31 -2.07 -25.60 15 12 C -0.07 -2.97 12.01 84.38 1.01 -1.96 15 13 C 0.02 0.74 6.80 38.77 0.26 1.00 15 14 C -0.16 -4.33 10.11 22.43 0.23 -4.11 15 15 C -0.06 -1.34 10.06 22.29 0.22 -1.11 15 16 C -0.26 -6.86 9.78 22.24 0.22 -6.64 15 17 C 0.37 13.16 7.66 130.97 1.00 14.16 15 18 N -0.86 -28.35 8.88 -55.03 -0.49 -28.84 15 19 N -0.40 -16.64 2.97 -335.02 -1.00 -17.64 15 20 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 21 H 0.05 2.41 7.20 -2.39 -0.02 2.39 15 22 H 0.05 2.01 5.62 -2.39 -0.01 2.00 15 23 H 0.20 6.25 8.06 -2.91 -0.02 6.23 15 24 H 0.17 3.30 8.06 -2.91 -0.02 3.27 15 25 H 0.17 2.40 8.06 -2.91 -0.02 2.37 15 26 H 0.17 3.23 8.06 -2.91 -0.02 3.20 15 27 H 0.41 15.97 4.62 -92.71 -0.43 15.54 15 28 H 0.43 10.11 8.82 -92.71 -0.82 9.30 15 Total: -1.00 -72.97 241.62 3.26 -69.71 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: -0.10 Total: 29.58 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 4.74 Total: -13.98 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -3.26 Total: -128.41 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.88 Total: 43.10 kcal Total: -72.97 3.26 -69.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260128381.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.241 kcal (2) G-P(sol) polarization free energy of solvation -72.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds