Wall clock time and date at job start Mon Mar 30 2020 03:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99890 * 2 1 4 4 H 1.48503 * 109.46976 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46994 * 119.99830 * 3 2 1 6 6 H 1.48497 * 109.47169 * 239.99950 * 3 2 1 7 7 C 1.37875 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00095 * 343.84156 * 7 2 1 9 9 C 1.50697 * 120.00374 * 163.83739 * 7 2 1 10 10 H 1.09003 * 109.46981 * 54.68828 * 9 7 2 11 11 N 1.46904 * 109.47336 * 294.69352 * 9 7 2 12 12 C 1.50699 * 109.47535 * 174.69236 * 9 7 2 13 13 C 1.34928 * 119.67124 * 84.72473 * 12 9 7 14 14 C 1.40478 * 120.43364 * 179.77989 * 13 12 9 15 15 C 1.36068 * 119.58775 * 0.49442 * 14 13 12 16 16 C 1.40791 * 119.22337 * 359.75929 * 15 14 13 17 17 C 1.38933 * 132.96467 * 180.02562 * 16 15 14 18 18 C 1.38544 * 107.57134 * 179.97438 * 17 16 15 19 19 N 1.31482 * 109.00743 * 0.02562 * 18 17 16 20 20 N 1.36532 * 119.66758 * 265.00377 * 12 9 7 21 21 H 0.97000 * 119.99490 * 183.45837 * 1 2 3 22 22 H 1.00904 * 110.99471 * 306.56995 * 11 9 7 23 23 H 1.00901 * 110.99943 * 70.51879 * 11 9 7 24 24 H 1.08005 * 119.78470 * 0.02562 * 13 12 9 25 25 H 1.08004 * 120.20624 * 180.25774 * 14 13 12 26 26 H 1.07995 * 120.38912 * 179.78645 * 15 14 13 27 27 H 1.08005 * 126.21082 * 0.02562 * 17 16 15 28 28 H 1.08002 * 125.49512 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.4967 -2.1107 0.2612 9 6 3.4669 -1.2199 -0.3627 10 1 4.0114 -0.5210 0.2722 11 7 3.6288 -0.8312 -1.7701 12 6 4.0103 -2.6108 -0.1601 13 6 3.8756 -3.5297 -1.1389 14 6 4.3802 -4.8297 -0.9688 15 6 4.9993 -5.1630 0.1961 16 6 5.1265 -4.1933 1.2089 17 6 5.6911 -4.2181 2.4781 18 6 5.5246 -2.9602 3.0345 19 7 4.8955 -2.1910 2.1736 20 7 4.6290 -2.9302 1.0144 21 1 -0.4849 -0.8386 0.0507 22 1 3.0485 -1.3975 -2.3707 23 1 3.4332 0.1502 -1.8990 24 1 3.3801 -3.2630 -2.0607 25 1 4.2741 -5.5611 -1.7564 26 1 5.3890 -6.1596 0.3420 27 1 6.1730 -5.0640 2.9456 28 1 5.8572 -2.6603 4.0173 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260169992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:33 Heat of formation + Delta-G solvation = 103.543264 kcal Electronic energy + Delta-G solvation = -14196.299407 eV Core-core repulsion = 11828.070317 eV Total energy + Delta-G solvation = -2368.229090 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.45551 -37.16337 -34.93694 -32.40268 -31.52783 -29.88768 -27.78495 -26.16674 -23.50550 -22.19377 -21.60545 -19.58031 -17.90002 -16.90713 -16.04955 -15.55142 -15.04055 -14.76447 -13.88928 -13.71177 -13.27706 -12.90633 -12.51007 -12.43519 -11.94729 -11.51644 -11.21244 -10.94763 -10.54157 -10.19658 -9.99366 -9.82295 -9.41604 -8.81662 -8.60270 -7.81085 -7.07299 -6.61643 -4.38163 1.35140 1.68769 2.81942 3.18234 3.23979 3.34615 3.47793 3.93602 4.26811 4.75722 5.00306 5.06149 5.30581 5.40651 5.48273 5.83101 5.86793 6.06389 6.09347 6.27757 6.48867 6.61509 6.74063 6.95284 7.10321 7.46500 7.60393 8.03005 8.10681 8.18588 8.33405 8.64942 9.33556 10.68228 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.034364 B = 0.010710 C = 0.009327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.605397 B = 2613.666504 C = 3001.302129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.038 3.962 3 Si 1.045 2.955 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.625 4.625 8 H 0.058 0.942 9 C 0.215 3.785 10 H 0.060 0.940 11 N -0.855 5.855 12 C 0.214 3.786 13 C -0.183 4.183 14 C -0.064 4.064 15 C -0.158 4.158 16 C 0.108 3.892 17 C -0.312 4.312 18 C 0.064 3.936 19 N -0.310 5.310 20 N -0.263 5.263 21 H 0.271 0.729 22 H 0.331 0.669 23 H 0.337 0.663 24 H 0.149 0.851 25 H 0.133 0.867 26 H 0.137 0.863 27 H 0.146 0.854 28 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.281 -7.241 -0.612 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.170 4.170 3 Si 0.872 3.128 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.664 4.664 8 H 0.076 0.924 9 C 0.104 3.896 10 H 0.078 0.922 11 N -0.388 5.388 12 C 0.106 3.894 13 C -0.205 4.205 14 C -0.087 4.087 15 C -0.178 4.178 16 C -0.011 4.011 17 C -0.341 4.341 18 C -0.113 4.113 19 N -0.132 5.132 20 N -0.030 5.030 21 H 0.081 0.919 22 H 0.143 0.857 23 H 0.153 0.847 24 H 0.167 0.833 25 H 0.151 0.849 26 H 0.155 0.845 27 H 0.164 0.836 28 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 9.378 -4.526 -0.636 10.433 hybrid contribution -0.600 -2.440 0.465 2.555 sum 8.778 -6.966 -0.172 11.208 Atomic orbital electron populations 1.70860 1.06758 1.30895 1.43709 1.25835 0.96199 1.02373 0.92594 0.83998 0.75396 0.75745 0.77638 1.20590 1.20241 1.20104 1.22422 0.93093 0.96794 1.54124 0.92425 1.18278 0.95893 0.86927 0.88467 0.92206 1.59681 1.62452 1.09277 1.07374 1.20575 0.88714 0.99209 0.80916 1.20434 1.07160 0.92499 1.00413 1.21150 0.94608 0.96193 0.96705 1.20342 1.05765 0.98720 0.92990 1.19672 0.98416 0.86473 0.96545 1.21118 1.17712 1.00058 0.95247 1.23699 0.96194 0.92349 0.99082 1.77963 1.24809 1.18323 0.92154 1.46196 1.36390 1.08759 1.11609 0.91908 0.85655 0.84664 0.83314 0.84945 0.84476 0.83633 0.79891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.70 55.43 0.76 -25.68 15 2 C 0.04 1.05 5.43 -17.82 -0.10 0.95 15 3 Si 1.04 24.50 26.55 -169.99 -4.51 19.99 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 6 H -0.27 -5.74 5.51 56.52 0.31 -5.42 15 7 C -0.62 -17.23 8.95 -34.44 -0.31 -17.54 15 8 H 0.06 1.76 7.99 -52.49 -0.42 1.34 15 9 C 0.21 5.18 2.52 -70.02 -0.18 5.01 15 10 H 0.06 1.55 6.64 -51.93 -0.34 1.21 15 11 N -0.85 -18.17 8.84 -6.65 -0.06 -18.22 15 12 C 0.21 4.77 5.87 -81.68 -0.48 4.30 15 13 C -0.18 -3.44 9.23 -39.91 -0.37 -3.81 15 14 C -0.06 -0.98 10.07 -39.52 -0.40 -1.38 15 15 C -0.16 -2.50 10.11 -39.40 -0.40 -2.90 15 16 C 0.11 2.06 6.81 -84.27 -0.57 1.48 15 17 C -0.31 -5.27 10.92 -39.21 -0.43 -5.70 15 18 C 0.06 1.14 11.94 -17.59 -0.21 0.93 15 19 N -0.31 -6.92 12.33 30.46 0.38 -6.54 15 20 N -0.26 -5.84 3.90 -7.01 -0.03 -5.87 15 21 H 0.27 8.06 8.72 -40.82 -0.36 7.71 15 22 H 0.33 6.59 7.43 -39.29 -0.29 6.29 15 23 H 0.34 7.16 5.64 -39.29 -0.22 6.94 15 24 H 0.15 2.58 6.55 -52.48 -0.34 2.23 15 25 H 0.13 1.52 8.06 -52.48 -0.42 1.09 15 26 H 0.14 1.66 8.06 -52.49 -0.42 1.23 15 27 H 0.15 1.95 8.06 -52.48 -0.42 1.52 15 28 H 0.18 2.41 8.06 -52.49 -0.42 1.99 15 LS Contribution 242.09 15.07 3.65 3.65 Total: -1.00 -31.67 242.09 -5.81 -37.47 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -2.55 Total: 13.85 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -3.44 Total: -18.66 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 1.05 Total: -56.31 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.51 Total: 19.99 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.67 -5.81 -37.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260169992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.017 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds