Wall clock time and date at job start Mon Mar 30 2020 03:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99890 * 2 1 4 4 H 1.48503 * 109.46976 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46994 * 119.99830 * 3 2 1 6 6 H 1.48497 * 109.47169 * 239.99950 * 3 2 1 7 7 C 1.37875 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00095 * 343.84156 * 7 2 1 9 9 C 1.50697 * 120.00374 * 163.83739 * 7 2 1 10 10 H 1.09003 * 109.46981 * 54.68828 * 9 7 2 11 11 N 1.46904 * 109.47336 * 294.69352 * 9 7 2 12 12 C 1.50699 * 109.47535 * 174.69236 * 9 7 2 13 13 C 1.34928 * 119.67124 * 84.72473 * 12 9 7 14 14 C 1.40478 * 120.43364 * 179.77989 * 13 12 9 15 15 C 1.36068 * 119.58775 * 0.49442 * 14 13 12 16 16 C 1.40791 * 119.22337 * 359.75929 * 15 14 13 17 17 C 1.38933 * 132.96467 * 180.02562 * 16 15 14 18 18 C 1.38544 * 107.57134 * 179.97438 * 17 16 15 19 19 N 1.31482 * 109.00743 * 0.02562 * 18 17 16 20 20 N 1.36532 * 119.66758 * 265.00377 * 12 9 7 21 21 H 0.97000 * 119.99490 * 183.45837 * 1 2 3 22 22 H 1.00904 * 110.99471 * 306.56995 * 11 9 7 23 23 H 1.00901 * 110.99943 * 70.51879 * 11 9 7 24 24 H 1.08005 * 119.78470 * 0.02562 * 13 12 9 25 25 H 1.08004 * 120.20624 * 180.25774 * 14 13 12 26 26 H 1.07995 * 120.38912 * 179.78645 * 15 14 13 27 27 H 1.08005 * 126.21082 * 0.02562 * 17 16 15 28 28 H 1.08002 * 125.49512 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.4967 -2.1107 0.2612 9 6 3.4669 -1.2199 -0.3627 10 1 4.0114 -0.5210 0.2722 11 7 3.6288 -0.8312 -1.7701 12 6 4.0103 -2.6108 -0.1601 13 6 3.8756 -3.5297 -1.1389 14 6 4.3802 -4.8297 -0.9688 15 6 4.9993 -5.1630 0.1961 16 6 5.1265 -4.1933 1.2089 17 6 5.6911 -4.2181 2.4781 18 6 5.5246 -2.9602 3.0345 19 7 4.8955 -2.1910 2.1736 20 7 4.6290 -2.9302 1.0144 21 1 -0.4849 -0.8386 0.0507 22 1 3.0485 -1.3975 -2.3707 23 1 3.4332 0.1502 -1.8990 24 1 3.3801 -3.2630 -2.0607 25 1 4.2741 -5.5611 -1.7564 26 1 5.3890 -6.1596 0.3420 27 1 6.1730 -5.0640 2.9456 28 1 5.8572 -2.6603 4.0173 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260169992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:33 Heat of formation + Delta-G solvation = 79.832025 kcal Electronic energy + Delta-G solvation = -14197.327604 eV Core-core repulsion = 11828.070317 eV Total energy + Delta-G solvation = -2369.257287 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.86186 -38.67656 -36.62682 -34.27928 -33.16479 -31.32498 -29.21717 -28.06804 -25.17969 -23.58785 -23.14711 -21.16564 -19.99585 -18.44322 -17.44914 -17.04540 -16.56742 -16.19549 -15.61864 -15.31413 -14.85956 -14.66245 -14.33878 -14.08407 -13.48259 -12.93115 -12.67062 -12.49864 -12.30461 -12.01718 -11.54804 -11.41570 -11.23320 -10.75080 -10.26510 -9.70027 -8.92095 -8.36914 -6.62004 -0.00206 0.29135 1.28817 1.41407 1.43920 1.62039 1.87844 2.28770 2.56893 2.88941 3.34091 3.79671 3.93975 4.09347 4.12730 4.32512 4.43048 4.63524 4.83330 4.90860 4.97865 5.26236 5.32622 5.44784 5.66142 5.77376 5.81429 6.09403 6.25518 6.33576 6.65672 6.72873 7.17304 8.42864 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.034364 B = 0.010710 C = 0.009327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.605397 B = 2613.666504 C = 3001.302129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 1.082 2.918 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.233 1.233 7 C -0.622 4.622 8 H 0.013 0.987 9 C 0.226 3.774 10 H 0.037 0.963 11 N -0.838 5.838 12 C 0.156 3.844 13 C -0.172 4.172 14 C -0.067 4.067 15 C -0.141 4.141 16 C 0.079 3.921 17 C -0.302 4.302 18 C 0.061 3.939 19 N -0.374 5.374 20 N -0.283 5.283 21 H 0.255 0.745 22 H 0.340 0.660 23 H 0.338 0.662 24 H 0.157 0.843 25 H 0.182 0.818 26 H 0.184 0.816 27 H 0.186 0.814 28 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.387 -8.932 -1.210 14.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.209 4.209 3 Si 0.903 3.097 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.157 1.157 7 C -0.662 4.662 8 H 0.032 0.968 9 C 0.115 3.885 10 H 0.055 0.945 11 N -0.371 5.371 12 C 0.048 3.952 13 C -0.194 4.194 14 C -0.089 4.089 15 C -0.160 4.160 16 C -0.040 4.040 17 C -0.331 4.331 18 C -0.115 4.115 19 N -0.198 5.198 20 N -0.050 5.050 21 H 0.064 0.936 22 H 0.153 0.847 23 H 0.153 0.847 24 H 0.174 0.826 25 H 0.199 0.801 26 H 0.201 0.799 27 H 0.203 0.797 28 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 11.496 -6.247 -1.256 13.144 hybrid contribution -1.211 -2.116 0.713 2.540 sum 10.285 -8.363 -0.543 13.267 Atomic orbital electron populations 1.70980 1.07870 1.29952 1.46499 1.27153 0.96157 1.05824 0.91720 0.83544 0.74843 0.72017 0.79253 1.20398 1.20691 1.15702 1.22515 0.95435 0.94951 1.53266 0.96813 1.17904 0.93028 0.88548 0.89048 0.94503 1.59598 1.62241 1.09401 1.05877 1.20469 0.92684 0.99111 0.82890 1.20805 1.05463 0.93561 0.99524 1.21608 0.93771 0.95417 0.98153 1.20983 1.03652 0.99713 0.91659 1.20515 0.98904 0.86196 0.98361 1.21662 1.16399 1.00693 0.94330 1.24409 0.94754 0.92479 0.99818 1.77858 1.27509 1.20913 0.93546 1.46271 1.37329 1.09971 1.11471 0.93559 0.84707 0.84655 0.82563 0.80119 0.79894 0.79709 0.76215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.58 13.70 21.45 0.29 -56.28 15 2 C -0.01 -0.43 5.43 84.65 0.46 0.03 15 3 Si 1.08 49.98 26.55 68.60 1.82 51.80 15 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 15 6 H -0.23 -9.10 5.51 99.48 0.55 -8.55 15 7 C -0.62 -35.69 8.95 25.60 0.23 -35.46 15 8 H 0.01 0.88 7.99 -2.91 -0.02 0.85 15 9 C 0.23 11.12 2.52 43.42 0.11 11.22 15 10 H 0.04 1.97 6.64 -2.39 -0.02 1.96 15 11 N -0.84 -35.18 8.84 -174.95 -1.55 -36.73 15 12 C 0.16 7.01 5.87 41.07 0.24 7.25 15 13 C -0.17 -6.23 9.23 22.05 0.20 -6.02 15 14 C -0.07 -1.82 10.07 22.31 0.22 -1.60 15 15 C -0.14 -3.87 10.11 22.39 0.23 -3.65 15 16 C 0.08 2.84 6.81 39.10 0.27 3.11 15 17 C -0.30 -9.35 10.92 22.51 0.25 -9.10 15 18 C 0.06 2.09 11.94 84.82 1.01 3.10 15 19 N -0.37 -16.92 12.33 -57.54 -0.71 -17.63 15 20 N -0.28 -12.59 3.90 -176.09 -0.69 -13.28 15 21 H 0.26 16.02 8.72 -92.71 -0.81 15.21 15 22 H 0.34 13.30 7.43 -89.69 -0.67 12.64 15 23 H 0.34 13.91 5.64 -89.69 -0.51 13.41 15 24 H 0.16 5.21 6.55 -2.91 -0.02 5.19 15 25 H 0.18 3.12 8.06 -2.91 -0.02 3.10 15 26 H 0.18 3.28 8.06 -2.91 -0.02 3.25 15 27 H 0.19 4.06 8.06 -2.91 -0.02 4.04 15 28 H 0.22 5.33 8.06 -2.91 -0.02 5.31 15 Total: -1.00 -73.48 242.09 2.22 -71.25 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.17 Total: 31.98 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 3.22 Total: -31.12 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -2.65 Total: -123.92 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.82 Total: 51.80 kcal Total: -73.48 2.22 -71.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260169992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.087 kcal (2) G-P(sol) polarization free energy of solvation -73.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds