Wall clock time and date at job start Mon Mar 30 2020 02:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37838 * 120.10122 * 2 1 4 4 C 1.38747 * 120.60101 * 179.97438 * 3 2 1 5 5 C 1.36657 * 120.51031 * 0.04834 * 4 3 2 6 6 C 1.39641 * 119.79900 * 359.97438 * 5 4 3 7 7 C 1.46564 * 133.74908 * 179.97438 * 6 5 4 8 8 C 1.50700 * 126.29036 * 359.97438 * 7 6 5 9 9 C 1.50707 * 109.47098 * 90.00089 * 8 7 6 10 10 H 1.07999 * 120.00097 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99896 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00015 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99537 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46806 * 90.00412 * 13 11 9 15 15 H 1.48500 * 109.46738 * 209.99822 * 13 11 9 16 16 H 1.48494 * 109.47529 * 329.99812 * 13 11 9 17 17 N 1.29749 * 107.42178 * 180.02562 * 7 6 5 18 18 O 1.41349 * 109.74449 * 359.97438 * 17 7 6 19 19 C 1.34830 * 109.33730 * 359.72293 * 18 17 7 20 20 H 1.09002 * 109.47152 * 89.99963 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.00063 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.00044 * 1 2 3 23 23 H 1.08000 * 119.70209 * 0.02562 * 3 2 1 24 24 H 1.07999 * 119.74141 * 180.02562 * 4 3 2 25 25 H 1.08001 * 120.10126 * 179.97438 * 5 4 3 26 26 H 1.08999 * 109.47510 * 209.99677 * 8 7 6 27 27 H 1.08997 * 109.47154 * 330.00424 * 8 7 6 28 28 H 0.96998 * 119.99894 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1925 0.0000 4 6 3.5857 1.2046 0.0005 5 6 4.2898 0.0333 0.0001 6 6 3.6087 -1.1857 -0.0004 7 6 4.0387 -2.5869 -0.0014 8 6 5.4616 -3.0832 -0.0028 9 6 5.9371 -3.2494 1.4176 10 1 5.2750 -3.0190 2.2391 11 6 7.2174 -3.6955 1.6682 12 7 8.0235 -3.9765 0.6678 13 14 7.8069 -3.9007 3.4289 14 1 7.5025 -5.2773 3.8955 15 1 9.2726 -3.6701 3.4901 16 1 7.1144 -2.9180 4.3006 17 7 2.9692 -3.3214 -0.0020 18 8 1.8224 -2.4951 -0.0008 19 6 2.2039 -1.2019 0.0067 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 1.6551 2.1259 0.0004 24 1 4.1133 2.1470 0.0009 25 1 5.3697 0.0505 0.0001 26 1 5.5112 -4.0430 -0.5171 27 1 6.0974 -2.3623 -0.5168 28 1 8.9244 -4.2899 0.8442 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260237508.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:35 Heat of formation + Delta-G solvation = 25.330085 kcal Electronic energy + Delta-G solvation = -13738.721346 eV Core-core repulsion = 11334.807927 eV Total energy + Delta-G solvation = -2403.913419 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.69766 -38.83356 -36.35546 -34.68842 -33.10336 -31.01701 -30.35496 -27.79594 -25.80092 -23.77822 -23.24875 -20.79762 -18.70454 -18.28580 -17.81471 -16.94384 -16.58899 -16.42243 -14.97071 -14.67002 -14.55118 -14.33365 -14.20478 -13.82918 -13.31853 -12.98522 -12.81339 -12.76773 -12.66065 -12.25101 -12.13876 -12.09056 -11.89520 -11.26361 -10.69986 -9.85048 -9.37239 -8.32852 -6.46653 -0.29557 0.32214 1.14131 1.39195 1.40561 1.51862 1.69902 2.35666 2.65717 3.00348 3.27860 3.42957 3.63124 3.99120 4.28048 4.35985 4.45489 4.56919 4.80088 4.83664 4.88982 5.08834 5.13124 5.26398 5.30639 5.40520 5.43980 5.57367 5.82613 5.91968 6.38243 6.59464 7.22294 8.78441 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.040715 B = 0.007711 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.534117 B = 3630.349541 C = 3863.962413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.107 4.107 3 C -0.054 4.054 4 C -0.138 4.138 5 C -0.054 4.054 6 C -0.212 4.212 7 C 0.157 3.843 8 C 0.090 3.910 9 C -0.539 4.539 10 H 0.049 0.951 11 C 0.019 3.981 12 N -0.919 5.919 13 Si 0.970 3.030 14 H -0.274 1.274 15 H -0.270 1.270 16 H -0.267 1.267 17 N -0.344 5.344 18 O -0.122 6.122 19 C 0.050 3.950 20 H 0.082 0.918 21 H 0.103 0.897 22 H 0.052 0.948 23 H 0.186 0.814 24 H 0.173 0.827 25 H 0.134 0.866 26 H 0.020 0.980 27 H 0.046 0.954 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.717 13.704 -0.748 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.108 4.108 3 C -0.072 4.072 4 C -0.155 4.155 5 C -0.074 4.074 6 C -0.215 4.215 7 C -0.022 4.022 8 C 0.052 3.948 9 C -0.577 4.577 10 H 0.067 0.933 11 C -0.181 4.181 12 N -0.557 5.557 13 Si 0.794 3.206 14 H -0.200 1.200 15 H -0.195 1.195 16 H -0.191 1.191 17 N -0.092 5.092 18 O -0.130 6.130 19 C -0.004 4.004 20 H 0.101 0.899 21 H 0.122 0.878 22 H 0.071 0.929 23 H 0.203 0.797 24 H 0.190 0.810 25 H 0.152 0.848 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.181 12.426 -0.814 16.084 hybrid contribution 0.970 -0.299 0.622 1.191 sum -9.211 12.126 -0.192 15.229 Atomic orbital electron populations 1.20756 0.87915 1.03902 1.03532 1.19402 0.98105 0.87636 1.05697 1.21563 0.94070 0.97339 0.94262 1.21236 0.94594 0.98135 1.01579 1.20792 1.01130 0.90147 0.95305 1.21051 0.93171 0.94050 1.13249 1.25455 0.97439 0.91579 0.87766 1.17803 0.82108 0.96469 0.98399 1.21009 0.98813 1.47003 0.90918 0.93283 1.25806 0.96164 0.93939 1.02229 1.70030 1.08094 1.44522 1.33060 0.85367 0.77845 0.78772 0.78620 1.19999 1.19465 1.19099 1.79799 0.92476 1.12189 1.24726 1.88983 1.28304 1.13411 1.82342 1.20778 0.93449 0.87220 0.98905 0.89924 0.87808 0.92916 0.79663 0.81003 0.84808 0.96145 0.93592 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.08 10.02 71.24 0.71 -1.37 15 2 C -0.11 -2.92 5.89 -19.79 -0.12 -3.04 15 3 C -0.05 -1.10 9.67 22.30 0.22 -0.89 15 4 C -0.14 -3.19 9.97 22.02 0.22 -2.97 15 5 C -0.05 -1.80 10.05 22.24 0.22 -1.57 15 6 C -0.21 -8.89 6.32 -20.22 -0.13 -9.02 15 7 C 0.16 7.81 6.65 45.04 0.30 8.11 15 8 C 0.09 4.92 5.58 29.10 0.16 5.08 15 9 C -0.54 -30.97 9.09 25.60 0.23 -30.73 15 10 H 0.05 2.85 7.74 -2.91 -0.02 2.83 15 11 C 0.02 1.06 5.46 84.66 0.46 1.52 15 12 N -0.92 -53.31 13.29 21.45 0.28 -53.03 15 13 Si 0.97 43.57 29.54 68.60 2.03 45.59 15 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 15 H -0.27 -11.46 7.11 99.48 0.71 -10.76 15 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 17 N -0.34 -17.51 12.81 -43.47 -0.56 -18.07 15 18 O -0.12 -5.52 12.06 29.79 0.36 -5.16 15 19 C 0.05 1.94 7.15 22.99 0.16 2.10 15 20 H 0.08 1.44 8.14 -2.39 -0.02 1.42 15 21 H 0.10 1.33 8.09 -2.39 -0.02 1.31 15 22 H 0.05 1.22 8.09 -2.38 -0.02 1.20 15 23 H 0.19 1.91 8.06 -2.91 -0.02 1.88 15 24 H 0.17 2.54 8.06 -2.91 -0.02 2.51 15 25 H 0.13 4.41 8.06 -2.91 -0.02 4.39 15 26 H 0.02 1.19 8.14 -2.39 -0.02 1.17 15 27 H 0.05 2.48 8.14 -2.39 -0.02 2.46 15 28 H 0.27 14.67 8.31 -92.71 -0.77 13.90 15 Total: -1.00 -69.21 255.71 5.72 -63.48 By element: Atomic # 1 Polarization: -1.21 SS G_CDS: 1.16 Total: -0.05 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 2.45 Total: -32.77 kcal Atomic # 7 Polarization: -70.82 SS G_CDS: -0.27 Total: -71.09 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: 0.36 Total: -5.16 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -69.21 5.72 -63.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260237508.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.814 kcal (2) G-P(sol) polarization free energy of solvation -69.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds