Wall clock time and date at job start Mon Mar 30 2020 03:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00177 * 2 1 4 4 H 1.48492 * 109.47329 * 89.98989 * 3 2 1 5 5 H 1.48495 * 109.47177 * 209.99587 * 3 2 1 6 6 H 1.48503 * 109.46533 * 329.99397 * 3 2 1 7 7 C 1.37884 * 120.00115 * 179.71553 * 2 1 3 8 8 H 1.07997 * 119.99642 * 6.63834 * 7 2 1 9 9 C 1.50702 * 119.99981 * 186.63664 * 7 2 1 10 10 H 1.09000 * 109.47141 * 305.20130 * 9 7 2 11 11 N 1.46896 * 109.46913 * 65.19846 * 9 7 2 12 12 C 1.50698 * 109.47003 * 185.19644 * 9 7 2 13 13 C 1.36063 * 120.38498 * 264.72743 * 12 9 7 14 14 C 1.40475 * 119.58688 * 179.67241 * 13 12 9 15 15 C 1.34937 * 120.43126 * 0.63608 * 14 13 12 16 16 N 1.36541 * 120.65765 * 359.66960 * 15 14 13 17 17 N 1.40041 * 132.43258 * 180.02562 * 16 15 14 18 18 C 1.31479 * 108.91681 * 179.97438 * 17 16 15 19 19 C 1.38550 * 109.00674 * 359.97438 * 18 17 16 20 20 C 1.37124 * 120.12132 * 359.97438 * 16 15 14 21 21 H 0.96996 * 119.99527 * 174.93188 * 1 2 3 22 22 H 1.00902 * 111.00125 * 293.23370 * 11 9 7 23 23 H 1.00899 * 111.00364 * 57.18903 * 11 9 7 24 24 H 1.07998 * 120.21015 * 359.97438 * 13 12 9 25 25 H 1.08000 * 119.78649 * 180.30576 * 14 13 12 26 26 H 1.08003 * 119.67291 * 179.68608 * 15 14 13 27 27 H 1.07999 * 125.49905 * 180.02562 * 18 17 16 28 28 H 1.07998 * 126.21581 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 1.4000 5 1 3.5468 1.4402 -0.6999 6 1 1.4467 2.6526 -0.7002 7 6 2.0046 -1.1941 0.0059 8 1 1.4700 -2.1267 -0.0976 9 6 3.5040 -1.1977 0.1568 10 1 3.9479 -0.5626 -0.6099 11 7 3.8637 -0.6851 1.4856 12 6 4.0208 -2.6051 0.0045 13 6 4.2414 -3.3797 1.1011 14 6 4.7168 -4.6916 0.9393 15 6 4.9669 -5.1808 -0.2931 16 7 4.7565 -4.4135 -1.4027 17 7 4.9275 -4.6626 -2.7701 18 6 4.5805 -3.5893 -3.4456 19 6 4.1732 -2.6083 -2.5559 20 6 4.2860 -3.1319 -1.2740 21 1 -0.4849 -0.8368 -0.0742 22 1 3.6262 0.2917 1.5729 23 1 3.4266 -1.2299 2.2138 24 1 4.0476 -2.9901 2.0895 25 1 4.8883 -5.3110 1.8073 26 1 5.3369 -6.1895 -0.4030 27 1 4.6076 -3.4887 -4.5205 28 1 3.8309 -1.6166 -2.8124 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260527357.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:55 Heat of formation + Delta-G solvation = 81.413948 kcal Electronic energy + Delta-G solvation = -14177.112450 eV Core-core repulsion = 11807.923761 eV Total energy + Delta-G solvation = -2369.188689 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.87207 -38.60881 -36.83052 -34.28769 -32.67122 -31.61933 -29.18077 -27.98546 -25.12227 -23.62258 -22.93377 -21.25251 -19.90587 -18.49864 -17.41934 -17.09948 -16.50557 -16.42365 -15.60585 -15.11320 -14.70367 -14.55314 -14.35850 -14.05054 -13.68476 -12.85855 -12.66318 -12.53167 -12.20099 -11.79672 -11.67655 -11.38345 -11.11936 -10.76401 -10.23247 -9.62323 -8.81363 -8.34153 -6.53887 -0.02010 0.20900 1.39021 1.41390 1.50831 1.65665 1.80420 2.38116 2.56102 2.98713 3.36233 3.77493 3.91724 3.97659 4.14857 4.32315 4.53340 4.70038 4.73549 4.88682 5.01746 5.24206 5.46627 5.58923 5.64548 5.71560 5.90148 6.00261 6.34283 6.41252 6.62708 6.72807 7.28740 8.54053 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.034716 B = 0.010485 C = 0.009194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.345021 B = 2669.930675 C = 3044.707344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.017 4.017 3 Si 1.083 2.917 4 H -0.247 1.247 5 H -0.256 1.256 6 H -0.290 1.290 7 C -0.609 4.609 8 H 0.011 0.989 9 C 0.225 3.775 10 H 0.045 0.955 11 N -0.836 5.836 12 C -0.057 4.057 13 C -0.097 4.097 14 C -0.138 4.138 15 C 0.066 3.934 16 N -0.281 5.281 17 N -0.357 5.357 18 C 0.075 3.925 19 C -0.310 4.310 20 C 0.093 3.907 21 H 0.252 0.748 22 H 0.327 0.673 23 H 0.338 0.662 24 H 0.151 0.849 25 H 0.198 0.802 26 H 0.197 0.803 27 H 0.225 0.775 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.941 -6.106 1.333 12.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.216 4.216 3 Si 0.904 3.096 4 H -0.172 1.172 5 H -0.180 1.180 6 H -0.216 1.216 7 C -0.649 4.649 8 H 0.029 0.971 9 C 0.114 3.886 10 H 0.062 0.938 11 N -0.368 5.368 12 C -0.060 4.060 13 C -0.120 4.120 14 C -0.159 4.159 15 C -0.058 4.058 16 N -0.048 5.048 17 N -0.182 5.182 18 C -0.099 4.099 19 C -0.339 4.339 20 C -0.028 4.028 21 H 0.061 0.939 22 H 0.141 0.859 23 H 0.151 0.849 24 H 0.169 0.831 25 H 0.215 0.785 26 H 0.214 0.786 27 H 0.241 0.759 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.969 -5.914 0.951 13.385 hybrid contribution -1.976 -0.732 -0.223 2.119 sum 9.993 -6.646 0.728 12.023 Atomic orbital electron populations 1.70935 1.08047 1.29782 1.48174 1.27267 0.96265 1.06148 0.91947 0.83512 0.74932 0.71596 0.79569 1.17175 1.18016 1.21607 1.22684 0.93301 0.93534 1.55378 0.97103 1.18024 0.91812 0.89113 0.89672 0.93761 1.59606 1.65502 1.06900 1.04746 1.19550 0.98127 0.98250 0.90071 1.21261 0.97599 0.93824 0.99325 1.21329 1.01413 0.96148 0.97004 1.22097 1.02467 0.98420 0.82810 1.46461 1.41702 1.09994 1.06631 1.77630 1.32757 1.24492 0.83303 1.24189 0.94673 0.89314 1.01726 1.21503 1.18740 1.03482 0.90178 1.19700 0.99902 0.86719 0.96446 0.93928 0.85906 0.84900 0.83136 0.78535 0.78605 0.75872 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.70 21.45 0.29 -56.86 15 2 C -0.02 -0.97 5.46 84.66 0.46 -0.51 15 3 Si 1.08 47.48 25.53 68.60 1.75 49.23 15 4 H -0.25 -9.53 6.93 99.48 0.69 -8.84 15 5 H -0.26 -10.40 6.37 99.48 0.63 -9.77 15 6 H -0.29 -12.94 7.11 99.48 0.71 -12.24 15 7 C -0.61 -33.58 9.06 25.60 0.23 -33.35 15 8 H 0.01 0.67 7.97 -2.91 -0.02 0.65 15 9 C 0.22 10.34 2.36 43.42 0.10 10.44 15 10 H 0.04 2.14 6.48 -2.39 -0.02 2.12 15 11 N -0.84 -33.19 8.72 -174.96 -1.53 -34.71 15 12 C -0.06 -2.42 5.02 -19.75 -0.10 -2.52 15 13 C -0.10 -3.28 9.31 22.31 0.21 -3.07 15 14 C -0.14 -3.55 9.98 22.06 0.22 -3.33 15 15 C 0.07 1.87 11.19 83.20 0.93 2.80 15 16 N -0.28 -10.50 3.90 -187.78 -0.73 -11.23 15 17 N -0.36 -13.14 12.66 -57.54 -0.73 -13.87 15 18 C 0.08 2.58 11.94 84.82 1.01 3.60 15 19 C -0.31 -12.59 10.57 22.51 0.24 -12.35 15 20 C 0.09 3.92 6.67 39.11 0.26 4.18 15 21 H 0.25 15.83 8.72 -92.71 -0.81 15.02 15 22 H 0.33 12.79 5.46 -89.69 -0.49 12.30 15 23 H 0.34 12.57 7.37 -89.69 -0.66 11.91 15 24 H 0.15 4.57 6.37 -2.91 -0.02 4.55 15 25 H 0.20 2.99 8.06 -2.91 -0.02 2.97 15 26 H 0.20 3.88 8.06 -2.91 -0.02 3.86 15 27 H 0.23 5.39 8.06 -2.91 -0.02 5.36 15 28 H 0.14 5.89 8.06 -2.91 -0.02 5.87 15 Total: -1.00 -70.32 241.09 2.55 -67.78 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -0.08 Total: 33.77 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 3.57 Total: -34.11 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -2.69 Total: -116.67 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.75 Total: 49.23 kcal Total: -70.32 2.55 -67.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527357.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.192 kcal (2) G-P(sol) polarization free energy of solvation -70.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds