Wall clock time and date at job start Mon Mar 30 2020 03:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48498 * 109.47141 * 270.00311 * 3 2 1 5 5 H 1.48505 * 109.46875 * 30.00449 * 3 2 1 6 6 H 1.48499 * 109.47153 * 149.99916 * 3 2 1 7 7 C 1.37875 * 120.00608 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99701 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47343 * 59.99661 * 9 7 2 11 11 N 1.46905 * 109.47075 * 299.99819 * 9 7 2 12 12 C 1.50697 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.36074 * 120.38810 * 100.00006 * 12 9 7 14 14 C 1.40472 * 119.58976 * 180.02562 * 13 12 9 15 15 C 1.34929 * 120.43302 * 359.96986 * 14 13 12 16 16 N 1.36537 * 120.66327 * 0.02562 * 15 14 13 17 17 N 1.40037 * 132.43861 * 180.02562 * 16 15 14 18 18 C 1.31488 * 108.91814 * 180.02562 * 17 16 15 19 19 C 1.38547 * 109.00647 * 359.97438 * 18 17 16 20 20 C 1.37141 * 120.11889 * 359.76179 * 16 15 14 21 21 H 0.96991 * 120.00497 * 359.97438 * 1 2 3 22 22 H 1.00901 * 110.99869 * 176.04968 * 11 9 7 23 23 H 1.00896 * 110.99543 * 300.00090 * 11 9 7 24 24 H 1.08001 * 120.20204 * 359.97438 * 13 12 9 25 25 H 1.07993 * 119.78410 * 180.02562 * 14 13 12 26 26 H 1.08000 * 119.66960 * 180.02562 * 15 14 13 27 27 H 1.07996 * 125.49780 * 179.97438 * 18 17 16 28 28 H 1.07999 * 126.21475 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4062 -2.5778 1.1974 12 6 2.2305 -3.6445 -0.0027 13 6 2.5229 -4.3011 1.1527 14 6 3.4387 -5.3661 1.1325 15 6 4.0270 -5.7399 -0.0228 16 7 3.7438 -5.0909 -1.1902 17 7 4.1984 -5.2660 -2.5031 18 6 3.6184 -4.3756 -3.2774 19 6 2.7714 -3.5931 -2.5094 20 6 2.8502 -4.0506 -1.2000 21 1 -0.4850 0.8399 0.0004 22 1 -0.1577 -3.4145 1.1881 23 1 0.9639 -2.5269 2.0367 24 1 2.0544 -4.0048 2.0795 25 1 3.6728 -5.8897 2.0476 26 1 4.7290 -6.5606 -0.0242 27 1 3.7768 -4.2710 -4.3406 28 1 2.1586 -2.7779 -2.8648 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260527366.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:57 Heat of formation + Delta-G solvation = 88.972556 kcal Electronic energy + Delta-G solvation = -14127.412378 eV Core-core repulsion = 11758.551454 eV Total energy + Delta-G solvation = -2368.860923 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.83135 -38.56008 -36.55445 -34.00223 -32.25378 -31.58765 -28.99461 -28.15135 -25.26153 -23.60631 -22.91635 -21.36839 -18.56411 -18.22699 -17.41086 -16.78508 -16.49176 -16.40231 -16.00917 -15.18088 -14.82087 -14.39001 -13.98734 -13.67493 -13.15249 -12.84511 -12.66153 -12.57495 -12.45990 -11.86346 -11.66113 -11.57596 -10.83077 -10.53086 -10.19679 -9.00492 -8.39191 -7.96941 -6.19657 -0.01127 0.23618 1.42592 1.44396 1.45822 1.53149 1.84287 2.43257 2.61930 3.24794 3.42458 3.84175 3.97196 4.12359 4.23069 4.42548 4.60638 4.70257 4.84819 4.99809 5.22755 5.24048 5.52076 5.61555 5.73872 5.74859 6.03193 6.17177 6.63698 6.66712 7.08175 7.24885 7.52207 9.04554 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.032248 B = 0.010121 C = 0.008792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.073435 B = 2765.908487 C = 3184.014959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.038 0.962 9 C 0.274 3.726 10 H 0.014 0.986 11 N -0.817 5.817 12 C -0.094 4.094 13 C -0.115 4.115 14 C -0.135 4.135 15 C 0.064 3.936 16 N -0.282 5.282 17 N -0.357 5.357 18 C 0.073 3.927 19 C -0.301 4.301 20 C 0.096 3.904 21 H 0.257 0.743 22 H 0.316 0.684 23 H 0.328 0.672 24 H 0.148 0.852 25 H 0.196 0.804 26 H 0.195 0.805 27 H 0.224 0.776 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.951 -9.855 1.440 11.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.163 4.163 3 Si 0.770 3.230 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.056 0.944 9 C 0.163 3.837 10 H 0.032 0.968 11 N -0.345 5.345 12 C -0.099 4.099 13 C -0.139 4.139 14 C -0.156 4.156 15 C -0.059 4.059 16 N -0.049 5.049 17 N -0.183 5.183 18 C -0.101 4.101 19 C -0.331 4.331 20 C -0.025 4.025 21 H 0.066 0.934 22 H 0.127 0.873 23 H 0.142 0.858 24 H 0.166 0.834 25 H 0.213 0.787 26 H 0.212 0.788 27 H 0.240 0.760 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.315 -10.065 1.073 11.930 hybrid contribution 0.175 0.981 -0.046 0.997 sum 6.489 -9.084 1.028 11.211 Atomic orbital electron populations 1.70198 1.06826 1.26454 1.47742 1.25568 0.95363 1.01414 0.93955 0.85815 0.78753 0.80398 0.78063 1.20405 1.20685 1.19926 1.20909 0.91553 0.90787 1.54124 0.94419 1.17625 0.87223 0.88626 0.90276 0.96800 1.58939 1.28133 1.43390 1.04045 1.21163 0.99495 0.98338 0.90894 1.21276 0.98695 0.95921 0.97972 1.21258 0.97606 0.98449 0.98302 1.22054 1.02682 0.99560 0.81629 1.46509 1.28195 1.22502 1.07726 1.77620 1.27452 1.27834 0.85348 1.24179 0.93181 0.91425 1.01313 1.21493 1.11645 1.08504 0.91450 1.19750 0.94419 0.91523 0.96766 0.93420 0.87261 0.85788 0.83441 0.78686 0.78799 0.76013 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.55 12.77 21.45 0.27 -50.28 15 2 C 0.04 2.26 5.39 84.65 0.46 2.72 15 3 Si 0.94 43.74 29.54 68.60 2.03 45.77 15 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 6 H -0.27 -12.54 7.11 99.48 0.71 -11.83 15 7 C -0.54 -29.24 8.71 25.60 0.22 -29.01 15 8 H 0.04 2.12 7.74 -2.91 -0.02 2.10 15 9 C 0.27 13.41 2.72 43.42 0.12 13.53 15 10 H 0.01 0.79 8.12 -2.39 -0.02 0.78 15 11 N -0.82 -36.35 8.02 -174.95 -1.40 -37.75 15 12 C -0.09 -3.94 5.03 -19.74 -0.10 -4.04 15 13 C -0.12 -3.77 9.29 22.31 0.21 -3.56 15 14 C -0.14 -3.36 9.98 22.05 0.22 -3.14 15 15 C 0.06 1.79 11.19 83.20 0.93 2.72 15 16 N -0.28 -10.41 3.90 -187.78 -0.73 -11.14 15 17 N -0.36 -13.08 12.66 -57.54 -0.73 -13.81 15 18 C 0.07 2.52 11.94 84.82 1.01 3.53 15 19 C -0.30 -12.38 10.67 22.51 0.24 -12.14 15 20 C 0.10 4.02 6.68 39.10 0.26 4.28 15 21 H 0.26 14.16 8.31 -92.71 -0.77 13.38 15 22 H 0.32 12.33 9.06 -89.69 -0.81 11.51 15 23 H 0.33 13.40 7.31 -89.70 -0.66 12.75 15 24 H 0.15 4.27 6.26 -2.91 -0.02 4.25 15 25 H 0.20 2.82 8.06 -2.91 -0.02 2.80 15 26 H 0.20 3.78 8.06 -2.91 -0.02 3.75 15 27 H 0.22 5.41 8.06 -2.91 -0.02 5.39 15 28 H 0.14 6.04 8.06 -2.91 -0.02 6.02 15 Total: -1.00 -68.17 248.82 2.73 -65.44 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.27 Total: 26.87 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 3.57 Total: -25.11 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -2.59 Total: -112.98 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.17 2.73 -65.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527366.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.412 kcal (2) G-P(sol) polarization free energy of solvation -68.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds