Wall clock time and date at job start Mon Mar 30 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38255 * 125.61852 * 2 1 4 4 C 1.39950 * 125.70378 * 0.02562 * 3 2 1 5 5 H 1.07999 * 120.00080 * 16.95720 * 4 3 2 6 6 C 1.40174 * 119.99957 * 196.95499 * 4 3 2 7 7 N 1.30750 * 119.99942 * 10.03025 * 6 4 3 8 8 Si 1.86799 * 119.99679 * 190.02433 * 6 4 3 9 9 H 1.48502 * 109.47359 * 265.03532 * 8 6 4 10 10 H 1.48504 * 109.47390 * 25.03878 * 8 6 4 11 11 H 1.48509 * 109.47042 * 145.03670 * 8 6 4 12 12 C 1.39131 * 108.59294 * 179.74083 * 3 2 1 13 13 C 1.40935 * 107.52160 * 0.22722 * 12 3 2 14 14 C 1.40621 * 133.05291 * 179.97438 * 13 12 3 15 15 C 1.36391 * 119.90308 * 180.02562 * 14 13 12 16 16 C 1.38931 * 120.64102 * 359.97438 * 15 14 13 17 17 C 1.38377 * 120.62867 * 359.97438 * 16 15 14 18 18 O 1.35986 * 120.09802 * 180.02562 * 17 16 15 19 19 C 1.38215 * 125.62043 * 180.13281 * 2 1 3 20 20 H 1.09000 * 109.47296 * 90.02292 * 1 2 3 21 21 H 1.09004 * 109.47280 * 210.02392 * 1 2 3 22 22 H 1.09005 * 109.47378 * 330.02020 * 1 2 3 23 23 H 0.97007 * 119.99777 * 179.97438 * 7 6 4 24 24 H 1.07999 * 126.23558 * 180.20092 * 12 3 2 25 25 H 1.08000 * 120.04479 * 359.97438 * 14 13 12 26 26 H 1.07999 * 119.68315 * 179.97438 * 15 14 13 27 27 H 1.08003 * 119.68971 * 180.02562 * 16 15 14 28 28 H 0.96698 * 113.99486 * 90.00174 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2702 1.1239 0.0000 4 6 1.8220 2.4497 0.0005 5 1 0.8016 2.6747 0.2737 6 6 2.6974 3.4856 -0.3536 7 7 3.8655 3.2064 -0.8704 8 14 2.1951 5.2649 -0.0871 9 1 1.6109 5.8073 -1.3400 10 1 1.1870 5.3371 1.0009 11 1 3.3881 6.0650 0.2896 12 6 3.6005 0.7165 0.0060 13 6 3.6127 -0.6928 0.0044 14 6 4.6485 -1.6438 0.0078 15 6 4.3498 -2.9746 0.0045 16 6 3.0284 -3.4036 -0.0018 17 6 1.9901 -2.4888 -0.0043 18 8 0.7007 -2.9207 -0.0099 19 6 2.2700 -1.1235 -0.0026 20 1 -0.3634 -0.0004 -1.0277 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5135 23 1 4.4712 3.9233 -1.1157 24 1 4.4659 1.3625 0.0105 25 1 5.6791 -1.3209 0.0123 26 1 5.1481 -3.7020 0.0067 27 1 2.8093 -4.4612 -0.0040 28 1 0.3245 -3.0471 0.8718 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260685385.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:02 Heat of formation + Delta-G solvation = -16.757594 kcal Electronic energy + Delta-G solvation = -14116.724041 eV Core-core repulsion = 11710.985563 eV Total energy + Delta-G solvation = -2405.738478 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.70422 -38.74677 -36.95346 -35.49853 -32.67730 -30.69069 -29.93017 -27.28706 -26.42669 -23.03021 -22.03904 -21.32190 -18.83253 -18.62641 -17.41641 -17.21392 -16.22247 -15.92195 -15.65494 -15.09114 -14.87623 -14.19194 -13.71939 -13.47300 -13.24036 -13.07716 -12.94206 -12.80673 -12.23362 -11.90051 -11.81729 -11.76983 -11.33086 -11.03093 -10.03405 -8.96728 -8.64983 -8.14791 -6.35089 0.43830 1.00942 1.38408 1.41150 1.55834 2.10588 2.20227 2.47312 3.10104 3.36803 3.52191 4.17596 4.24085 4.36706 4.52290 4.68462 4.71621 4.93316 5.01650 5.11718 5.24953 5.48637 5.70143 5.76474 5.84314 5.97416 6.11432 6.30168 6.62540 6.73058 6.88582 7.09158 7.20752 8.32962 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.043768 B = 0.009334 C = 0.007790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.580947 B = 2999.216671 C = 3593.588102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.518 5.518 3 C 0.250 3.750 4 C -0.481 4.481 5 H 0.088 0.912 6 C 0.034 3.966 7 N -0.815 5.815 8 Si 1.002 2.998 9 H -0.262 1.262 10 H -0.253 1.253 11 H -0.267 1.267 12 C -0.354 4.354 13 C -0.069 4.069 14 C -0.156 4.156 15 C -0.117 4.117 16 C -0.193 4.193 17 C 0.097 3.903 18 O -0.503 6.503 19 C -0.006 4.006 20 H 0.052 0.948 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.289 0.711 24 H 0.121 0.879 25 H 0.113 0.887 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.046 -4.052 3.002 6.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.208 5.208 3 C 0.143 3.857 4 C -0.514 4.514 5 H 0.106 0.894 6 C -0.184 4.184 7 N -0.440 5.440 8 Si 0.821 3.179 9 H -0.186 1.186 10 H -0.177 1.177 11 H -0.192 1.192 12 C -0.377 4.377 13 C -0.074 4.074 14 C -0.174 4.174 15 C -0.136 4.136 16 C -0.212 4.212 17 C 0.050 3.950 18 O -0.314 6.314 19 C -0.110 4.110 20 H 0.070 0.930 21 H 0.108 0.892 22 H 0.097 0.903 23 H 0.100 0.900 24 H 0.138 0.862 25 H 0.131 0.869 26 H 0.163 0.837 27 H 0.161 0.839 28 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.113 -3.955 2.298 6.152 hybrid contribution -0.014 0.848 0.389 0.934 sum -4.127 -3.107 2.688 5.823 Atomic orbital electron populations 1.21733 0.76937 1.03592 1.01996 1.44438 1.05777 1.03890 1.66650 1.18452 0.88778 0.86497 0.91946 1.19020 0.99770 0.89144 1.43461 0.89352 1.26847 0.93853 1.06247 0.91405 1.69922 1.08541 1.36923 1.28663 0.84899 0.79063 0.74133 0.79775 1.18616 1.17658 1.19167 1.20974 0.96127 0.91526 1.29036 1.18662 0.92486 0.94650 1.01626 1.20457 0.97260 0.92928 1.06799 1.20547 0.96372 0.94713 1.01982 1.20939 0.91600 0.98875 1.09814 1.17580 0.84536 0.87091 1.05760 1.84778 1.24188 1.88093 1.34383 1.18969 0.91043 0.88376 1.12579 0.92974 0.89225 0.90282 0.89995 0.86151 0.86910 0.83744 0.83881 0.74942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.73 10.58 127.77 1.35 5.08 15 2 N -0.52 -25.50 3.24 -529.62 -1.72 -27.22 15 3 C 0.25 13.88 6.54 38.76 0.25 14.14 15 4 C -0.48 -25.34 8.94 23.16 0.21 -25.13 15 5 H 0.09 4.26 7.06 -2.91 -0.02 4.24 15 6 C 0.03 1.66 5.42 85.32 0.46 2.13 15 7 N -0.82 -43.26 10.77 21.87 0.24 -43.02 15 8 Si 1.00 36.95 29.57 68.60 2.03 38.98 15 9 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 10 H -0.25 -8.92 7.11 99.48 0.71 -8.21 15 11 H -0.27 -9.48 7.11 99.48 0.71 -8.77 15 12 C -0.35 -20.48 9.66 23.15 0.22 -20.25 15 13 C -0.07 -3.64 6.14 -21.36 -0.13 -3.77 15 14 C -0.16 -6.95 10.07 22.42 0.23 -6.72 15 15 C -0.12 -4.35 9.96 22.00 0.22 -4.13 15 16 C -0.19 -7.09 9.97 22.47 0.22 -6.86 15 17 C 0.10 4.02 6.72 22.57 0.15 4.17 15 18 O -0.50 -17.11 11.86 -93.39 -1.11 -18.22 15 19 C -0.01 -0.31 6.82 39.09 0.27 -0.04 15 20 H 0.05 1.92 8.14 -2.39 -0.02 1.90 15 21 H 0.09 2.82 6.73 -2.38 -0.02 2.81 15 22 H 0.08 2.78 7.20 -2.38 -0.02 2.77 15 23 H 0.29 13.76 8.29 -92.70 -0.77 12.99 15 24 H 0.12 7.32 6.34 -2.91 -0.02 7.30 15 25 H 0.11 4.68 8.06 -2.91 -0.02 4.65 15 26 H 0.14 4.16 8.06 -2.91 -0.02 4.14 15 27 H 0.14 4.24 8.06 -2.91 -0.02 4.21 15 28 H 0.39 9.36 8.96 -74.06 -0.66 8.69 15 Total: -1.00 -66.10 244.49 3.42 -62.68 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.53 Total: 28.20 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 3.45 Total: -41.39 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -1.48 Total: -70.24 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -1.11 Total: -18.22 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Total: -66.10 3.42 -62.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260685385.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.923 kcal (2) G-P(sol) polarization free energy of solvation -66.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds