Wall clock time and date at job start Mon Mar 30 2020 02:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99984 * 2 1 4 4 H 1.48502 * 109.46769 * 90.00357 * 3 2 1 5 5 H 1.48506 * 109.47273 * 210.00220 * 3 2 1 6 6 H 1.48492 * 109.47395 * 330.00348 * 3 2 1 7 7 C 1.37880 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99977 * 175.49767 * 7 2 1 9 9 C 1.50700 * 119.99746 * 355.50178 * 7 2 1 10 10 C 1.53004 * 109.21996 * 301.01341 * 9 7 2 11 11 N 1.46902 * 109.46994 * 303.16855 * 10 9 7 12 12 C 1.52580 * 109.22233 * 181.65562 * 9 7 2 13 13 C 1.53099 * 109.95646 * 310.34820 * 12 9 7 14 14 S 1.81745 * 108.84261 * 296.98099 * 13 12 9 15 15 O 1.42106 * 109.46723 * 297.26738 * 14 13 12 16 16 C 1.81749 * 102.22306 * 53.26071 * 14 13 12 17 17 C 1.52581 * 109.22907 * 60.41495 * 9 7 2 18 18 H 0.97008 * 119.99895 * 359.97438 * 1 2 3 19 19 H 1.08990 * 109.47048 * 63.16867 * 10 9 7 20 20 H 1.09001 * 109.47089 * 183.17139 * 10 9 7 21 21 H 1.00898 * 111.00054 * 60.57409 * 11 10 9 22 22 H 1.00897 * 110.99763 * 184.53406 * 11 10 9 23 23 H 1.08995 * 109.39282 * 70.49993 * 12 9 7 24 24 H 1.09002 * 109.38871 * 190.20531 * 12 9 7 25 25 H 1.08999 * 109.57932 * 177.17180 * 13 12 9 26 26 H 1.09000 * 109.57567 * 56.78466 * 13 12 9 27 27 H 1.09002 * 109.57564 * 186.92261 * 16 14 13 28 28 H 1.09000 * 109.56788 * 66.54314 * 16 14 13 29 29 H 1.08998 * 109.39122 * 169.79055 * 17 9 7 30 30 H 1.09000 * 109.39199 * 289.49714 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 1.4001 5 1 3.5467 1.4403 -0.7001 6 1 1.4466 2.6527 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0820 -1.1955 -0.0740 9 6 1.2544 -2.4972 0.1012 10 6 0.4442 -2.5119 1.3990 11 7 1.3441 -2.2997 2.5406 12 6 2.2525 -3.6511 0.1199 13 6 3.2508 -3.4972 -1.0306 14 16 2.3505 -3.5963 -2.6063 15 8 1.7504 -4.8786 -2.7290 16 6 1.0554 -2.3398 -2.3891 17 6 0.3042 -2.6241 -1.0858 18 1 -0.4850 0.8401 0.0004 19 1 -0.3010 -1.7170 1.3712 20 1 -0.0555 -3.4749 1.5045 21 1 1.8126 -1.4088 2.4709 22 1 0.8451 -2.3786 3.4139 23 1 2.7900 -3.6495 1.0681 24 1 1.7172 -4.5943 0.0106 25 1 3.9905 -4.2963 -0.9817 26 1 3.7490 -2.5307 -0.9549 27 1 0.3606 -2.3826 -3.2280 28 1 1.5109 -1.3508 -2.3399 29 1 -0.1038 -3.6343 -1.1163 30 1 -0.5111 -1.9092 -0.9747 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260756976.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:43 Heat of formation + Delta-G solvation = -66.794937 kcal Electronic energy + Delta-G solvation = -13955.620787 eV Core-core repulsion = 11683.156479 eV Total energy + Delta-G solvation = -2272.464309 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.26862 -36.49215 -33.97093 -33.84759 -31.91665 -28.51192 -26.91673 -23.86066 -23.34535 -20.71406 -18.53289 -17.34259 -16.99394 -16.51485 -15.88475 -15.76473 -15.27766 -14.96381 -14.34920 -14.00357 -13.82971 -13.42359 -13.07543 -13.01377 -12.66424 -12.35166 -12.32394 -12.16053 -11.84261 -11.36570 -11.19095 -10.60160 -10.38033 -10.26735 -9.22904 -8.88114 -7.89796 -6.04401 1.14212 1.51570 1.58618 1.63692 1.96279 2.53315 3.14645 3.32093 4.08505 4.28558 4.33270 4.51329 4.54609 4.66059 4.75924 4.86510 5.11789 5.23438 5.36801 5.44636 5.53810 5.62763 5.67143 5.87301 6.14587 6.48256 6.63541 6.87719 7.06716 7.60522 9.07554 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.031219 B = 0.014297 C = 0.012172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.674320 B = 1957.980890 C = 2299.756573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.030 3.970 3 Si 0.937 3.063 4 H -0.290 1.290 5 H -0.254 1.254 6 H -0.300 1.300 7 C -0.491 4.491 8 H 0.076 0.924 9 C 0.058 3.942 10 C 0.079 3.921 11 N -0.838 5.838 12 C -0.090 4.090 13 C -0.419 4.419 14 S 1.275 4.725 15 O -0.937 6.937 16 C -0.402 4.402 17 C -0.097 4.097 18 H 0.254 0.746 19 H 0.034 0.966 20 H 0.012 0.988 21 H 0.344 0.656 22 H 0.325 0.675 23 H 0.067 0.933 24 H 0.005 0.995 25 H 0.104 0.896 26 H 0.144 0.856 27 H 0.086 0.914 28 H 0.134 0.866 29 H -0.008 1.008 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.739 0.619 -3.330 7.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.169 4.169 3 Si 0.765 3.235 4 H -0.216 1.216 5 H -0.177 1.177 6 H -0.227 1.227 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.058 3.942 10 C -0.053 4.053 11 N -0.366 5.366 12 C -0.128 4.128 13 C -0.558 4.558 14 S 1.476 4.524 15 O -0.933 6.933 16 C -0.540 4.540 17 C -0.136 4.136 18 H 0.063 0.937 19 H 0.052 0.948 20 H 0.030 0.970 21 H 0.157 0.843 22 H 0.136 0.864 23 H 0.085 0.915 24 H 0.024 0.976 25 H 0.123 0.877 26 H 0.162 0.838 27 H 0.105 0.895 28 H 0.152 0.848 29 H 0.011 0.989 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.143 -0.528 -4.413 8.413 hybrid contribution -2.232 1.250 2.267 3.418 sum 4.911 0.722 -2.146 5.408 Atomic orbital electron populations 1.70013 1.07112 1.26271 1.51311 1.25488 0.95073 1.01177 0.95202 0.85867 0.79573 0.80507 0.77570 1.21636 1.17736 1.22718 1.21240 0.93453 0.89280 1.48971 0.90607 1.18188 0.91752 0.93967 0.90315 1.21583 0.94738 0.96203 0.92754 1.58738 1.33699 1.40658 1.03526 1.21263 0.96729 0.95897 0.98944 1.27489 1.06595 1.09282 1.12397 1.68633 0.98655 0.85472 0.99593 1.92886 1.79338 1.38785 1.82259 1.27270 1.11639 1.14392 1.00708 1.21313 1.00801 0.96164 0.95302 0.93689 0.94812 0.96998 0.84281 0.86449 0.91466 0.97583 0.87708 0.83840 0.89512 0.84788 0.98887 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.57 9.46 21.45 0.20 -45.37 16 2 C 0.03 1.38 4.82 84.66 0.41 1.78 16 3 Si 0.94 37.39 29.54 68.60 2.03 39.42 16 4 H -0.29 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 6 H -0.30 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.49 -21.72 4.43 25.60 0.11 -21.61 16 8 H 0.08 3.17 5.93 -2.91 -0.02 3.16 16 9 C 0.06 2.64 0.33 -53.21 -0.02 2.62 16 10 C 0.08 3.65 5.41 86.30 0.47 4.12 16 11 N -0.84 -34.15 8.68 -186.72 -1.62 -35.77 16 12 C -0.09 -3.81 4.65 30.49 0.14 -3.67 16 13 C -0.42 -14.05 6.13 72.02 0.44 -13.61 16 14 S 1.28 41.90 13.75 -56.49 -0.78 41.12 16 15 O -0.94 -42.76 18.14 -148.98 -2.70 -45.47 16 16 C -0.40 -15.42 6.14 72.01 0.44 -14.97 16 17 C -0.10 -4.53 4.28 30.49 0.13 -4.40 16 18 H 0.25 12.61 8.31 -92.70 -0.77 11.84 16 19 H 0.03 1.73 6.20 -2.39 -0.01 1.72 16 20 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 21 H 0.34 14.38 7.90 -89.70 -0.71 13.67 16 22 H 0.33 11.68 9.08 -89.70 -0.81 10.87 16 23 H 0.07 2.86 7.35 -2.39 -0.02 2.84 16 24 H 0.01 0.25 8.06 -2.39 -0.02 0.23 16 25 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 26 H 0.14 4.36 5.92 -2.39 -0.01 4.34 16 27 H 0.09 3.13 8.14 -2.39 -0.02 3.12 16 28 H 0.13 5.04 6.60 -2.39 -0.02 5.02 16 29 H -0.01 -0.39 8.06 -2.39 -0.02 -0.41 16 30 H 0.07 3.60 6.21 -2.39 -0.01 3.58 16 Total: -1.00 -62.74 241.12 -1.11 -63.84 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -0.36 Total: 31.95 kcal Atomic # 6 Polarization: -51.86 SS G_CDS: 2.13 Total: -49.73 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -1.42 Total: -81.14 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -2.70 Total: -45.47 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Atomic # 16 Polarization: 41.90 SS G_CDS: -0.78 Total: 41.12 kcal Total: -62.74 -1.11 -63.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260756976.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.953 kcal (2) G-P(sol) polarization free energy of solvation -62.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds