Wall clock time and date at job start Mon Mar 30 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36484 * 124.88661 * 2 1 4 4 C 1.34414 * 109.25310 * 180.18708 * 3 2 1 5 5 C 1.46762 * 106.58659 * 359.57463 * 4 3 2 6 6 C 1.46689 * 127.02545 * 180.26505 * 5 4 3 7 7 O 1.34537 * 126.25141 * 226.72961 * 6 5 4 8 8 C 1.34328 * 110.99056 * 179.97438 * 7 6 5 9 9 C 1.34052 * 110.09589 * 359.97438 * 8 7 6 10 10 C 1.40785 * 126.25466 * 46.41966 * 6 5 4 11 11 C 1.40695 * 127.44818 * 359.97438 * 10 6 5 12 12 H 1.07993 * 119.99892 * 8.53424 * 11 10 6 13 13 C 1.39626 * 119.99782 * 188.52912 * 11 10 6 14 14 N 1.31111 * 120.00476 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99699 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47510 * 0.02562 * 15 13 11 17 17 H 1.48512 * 109.47007 * 119.99887 * 15 13 11 18 18 H 1.48499 * 109.47122 * 239.99313 * 15 13 11 19 19 C 1.35615 * 124.88689 * 179.70607 * 2 1 3 20 20 H 1.09001 * 109.46689 * 270.29290 * 1 2 3 21 21 H 1.08993 * 109.47389 * 30.29344 * 1 2 3 22 22 H 1.08999 * 109.47060 * 150.30242 * 1 2 3 23 23 H 1.08004 * 125.37249 * 0.06478 * 3 2 1 24 24 H 1.08005 * 126.70556 * 179.84137 * 4 3 2 25 25 H 1.08000 * 124.95003 * 180.02562 * 8 7 6 26 26 H 1.08003 * 126.84298 * 180.02562 * 9 8 7 27 27 H 0.96993 * 120.00310 * 179.97438 * 14 13 11 28 28 H 1.07999 * 126.00817 * 0.03277 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2456 1.1196 0.0000 4 6 3.5400 0.7573 -0.0041 5 6 3.5645 -0.7101 0.0035 6 6 4.7501 -1.5737 0.0079 7 8 4.9553 -2.6473 -0.7765 8 6 6.1457 -3.2128 -0.5165 9 6 6.7766 -2.5337 0.4518 10 6 5.8839 -1.4271 0.8295 11 6 6.1132 -0.4368 1.8023 12 1 5.3192 0.2398 2.0816 13 6 7.3673 -0.3288 2.4065 14 7 8.3312 -1.1506 2.0678 15 14 7.6715 0.9855 3.6986 16 1 6.4315 1.7772 3.9009 17 1 8.0608 0.3408 4.9785 18 1 8.7638 1.8830 3.2441 19 6 2.2406 -1.1124 0.0057 20 1 -0.3633 0.0053 1.0277 21 1 -0.3634 0.8873 -0.5183 22 1 -0.3633 -0.8927 -0.5091 23 1 1.8808 2.1361 0.0010 24 1 4.3950 1.4172 -0.0076 25 1 6.5377 -4.0867 -1.0156 26 1 7.7483 -2.7530 0.8691 27 1 9.2024 -1.0754 2.4873 28 1 1.8872 -2.1329 0.0104 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260857680.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:14 Heat of formation + Delta-G solvation = 55.078797 kcal Electronic energy + Delta-G solvation = -13815.449483 eV Core-core repulsion = 11412.826065 eV Total energy + Delta-G solvation = -2402.623418 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.20275 -39.66509 -33.79610 -32.27086 -30.34712 -29.00261 -27.55320 -25.92925 -24.46565 -20.53150 -20.02614 -19.08583 -18.21364 -17.19873 -16.09609 -15.00142 -14.71464 -14.39435 -13.94948 -13.56964 -12.88736 -12.37454 -12.27839 -11.90233 -11.84294 -11.54606 -11.22738 -11.17257 -10.96772 -10.66241 -9.81117 -9.56102 -9.35729 -7.89017 -7.71401 -7.55817 -6.57235 -6.46572 -4.02586 2.77221 3.06641 3.17868 3.24960 3.32238 3.56702 3.98823 4.09264 4.31636 4.90369 5.02951 5.34640 5.51936 5.56472 5.60132 5.87138 6.29907 6.46681 6.74392 7.01929 7.06599 7.25986 7.38147 7.67618 7.79251 7.86703 8.07077 8.11247 8.26555 8.61007 8.99610 9.08412 9.32396 10.46046 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.027142 B = 0.010174 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.366232 B = 2751.467214 C = 3642.675253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.463 5.463 3 C -0.033 4.033 4 C -0.174 4.174 5 C -0.019 4.019 6 C -0.158 4.158 7 O -0.207 6.207 8 C -0.083 4.083 9 C -0.211 4.211 10 C 0.054 3.946 11 C -0.423 4.423 12 H 0.078 0.922 13 C 0.068 3.932 14 N -0.819 5.819 15 Si 0.913 3.087 16 H -0.262 1.262 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.043 4.043 20 H 0.062 0.938 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.152 0.848 24 H 0.137 0.863 25 H 0.169 0.831 26 H 0.157 0.843 27 H 0.273 0.727 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.957 2.196 -1.702 9.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.142 5.142 3 C -0.160 4.160 4 C -0.200 4.200 5 C -0.025 4.025 6 C -0.205 4.205 7 O -0.109 6.109 8 C -0.150 4.150 9 C -0.232 4.232 10 C 0.051 3.949 11 C -0.454 4.454 12 H 0.097 0.903 13 C -0.146 4.146 14 N -0.448 5.448 15 Si 0.739 3.261 16 H -0.186 1.186 17 H -0.202 1.202 18 H -0.201 1.201 19 C -0.171 4.171 20 H 0.081 0.919 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.169 0.831 24 H 0.155 0.845 25 H 0.186 0.814 26 H 0.174 0.826 27 H 0.084 0.916 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.301 2.073 -1.842 9.706 hybrid contribution 0.460 0.502 0.740 1.005 sum -8.842 2.576 -1.103 9.275 Atomic orbital electron populations 1.21829 0.78810 1.03294 1.02246 1.43380 1.05246 1.05996 1.59619 1.21406 0.90797 0.90455 1.13312 1.21973 0.95040 0.94152 1.08796 1.18133 0.88085 0.90738 1.05580 1.19277 0.99505 0.96464 1.05287 1.83533 1.34509 1.38357 1.54489 1.23335 0.87040 1.01183 1.03491 1.23316 1.02274 0.97326 1.00250 1.19238 0.89346 0.93142 0.93164 1.18803 0.96508 1.13004 1.17103 0.90339 1.25851 0.95773 0.96225 0.96722 1.69829 1.03045 1.33886 1.38037 0.86176 0.79058 0.80755 0.80152 1.18576 1.20193 1.20140 1.22196 0.90330 0.90335 1.14208 0.91925 0.90730 0.90654 0.83084 0.84481 0.81439 0.82580 0.91641 0.82809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 11.05 59.85 0.66 1.56 15 2 N -0.46 -7.88 3.11 -123.80 -0.39 -8.27 15 3 C -0.03 -0.58 11.31 -16.83 -0.19 -0.77 15 4 C -0.17 -3.77 10.50 -37.49 -0.39 -4.17 15 5 C -0.02 -0.45 6.04 -103.00 -0.62 -1.07 15 6 C -0.16 -4.30 7.31 -35.21 -0.26 -4.56 15 7 O -0.21 -5.45 10.56 5.00 0.05 -5.40 15 8 C -0.08 -2.03 11.96 29.26 0.35 -1.68 15 9 C -0.21 -5.73 9.87 -37.46 -0.37 -6.10 15 10 C 0.05 1.56 6.12 -104.41 -0.64 0.92 15 11 C -0.42 -12.00 9.05 -38.14 -0.35 -12.35 15 12 H 0.08 2.20 7.34 -52.49 -0.39 1.81 15 13 C 0.07 1.80 5.49 -17.34 -0.10 1.71 15 14 N -0.82 -22.09 10.52 55.53 0.58 -21.50 15 15 Si 0.91 19.92 29.56 -169.99 -5.02 14.90 15 16 H -0.26 -5.67 7.11 56.52 0.40 -5.27 15 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 19 C -0.04 -0.88 11.45 -15.83 -0.18 -1.06 15 20 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.07 0.67 8.13 -51.93 -0.42 0.25 15 22 H 0.07 0.73 8.13 -51.93 -0.42 0.31 15 23 H 0.15 2.08 8.06 -52.48 -0.42 1.66 15 24 H 0.14 2.96 8.06 -52.48 -0.42 2.54 15 25 H 0.17 3.26 8.06 -52.49 -0.42 2.84 15 26 H 0.16 4.27 6.17 -52.48 -0.32 3.95 15 27 H 0.27 6.71 8.30 -40.82 -0.34 6.37 15 28 H 0.15 2.84 8.06 -52.49 -0.42 2.42 15 LS Contribution 253.67 15.07 3.82 3.82 Total: -1.00 -32.09 253.67 -5.83 -37.93 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -2.80 Total: 6.09 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -2.08 Total: -27.56 kcal Atomic # 7 Polarization: -29.97 SS G_CDS: 0.20 Total: -29.77 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: 0.05 Total: -5.40 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.09 -5.83 -37.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260857680.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.008 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds