Wall clock time and date at job start Mon Mar 30 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36484 * 124.88661 * 2 1 4 4 C 1.34414 * 109.25310 * 180.18708 * 3 2 1 5 5 C 1.46762 * 106.58659 * 359.57463 * 4 3 2 6 6 C 1.46689 * 127.02545 * 180.26505 * 5 4 3 7 7 O 1.34537 * 126.25141 * 226.72961 * 6 5 4 8 8 C 1.34328 * 110.99056 * 179.97438 * 7 6 5 9 9 C 1.34052 * 110.09589 * 359.97438 * 8 7 6 10 10 C 1.40785 * 126.25466 * 46.41966 * 6 5 4 11 11 C 1.40695 * 127.44818 * 359.97438 * 10 6 5 12 12 H 1.07993 * 119.99892 * 8.53424 * 11 10 6 13 13 C 1.39626 * 119.99782 * 188.52912 * 11 10 6 14 14 N 1.31111 * 120.00476 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99699 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47510 * 0.02562 * 15 13 11 17 17 H 1.48512 * 109.47007 * 119.99887 * 15 13 11 18 18 H 1.48499 * 109.47122 * 239.99313 * 15 13 11 19 19 C 1.35615 * 124.88689 * 179.70607 * 2 1 3 20 20 H 1.09001 * 109.46689 * 270.29290 * 1 2 3 21 21 H 1.08993 * 109.47389 * 30.29344 * 1 2 3 22 22 H 1.08999 * 109.47060 * 150.30242 * 1 2 3 23 23 H 1.08004 * 125.37249 * 0.06478 * 3 2 1 24 24 H 1.08005 * 126.70556 * 179.84137 * 4 3 2 25 25 H 1.08000 * 124.95003 * 180.02562 * 8 7 6 26 26 H 1.08003 * 126.84298 * 180.02562 * 9 8 7 27 27 H 0.96993 * 120.00310 * 179.97438 * 14 13 11 28 28 H 1.07999 * 126.00817 * 0.03277 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2456 1.1196 0.0000 4 6 3.5400 0.7573 -0.0041 5 6 3.5645 -0.7101 0.0035 6 6 4.7501 -1.5737 0.0079 7 8 4.9553 -2.6473 -0.7765 8 6 6.1457 -3.2128 -0.5165 9 6 6.7766 -2.5337 0.4518 10 6 5.8839 -1.4271 0.8295 11 6 6.1132 -0.4368 1.8023 12 1 5.3192 0.2398 2.0816 13 6 7.3673 -0.3288 2.4065 14 7 8.3312 -1.1506 2.0678 15 14 7.6715 0.9855 3.6986 16 1 6.4315 1.7772 3.9009 17 1 8.0608 0.3408 4.9785 18 1 8.7638 1.8830 3.2441 19 6 2.2406 -1.1124 0.0057 20 1 -0.3633 0.0053 1.0277 21 1 -0.3634 0.8873 -0.5183 22 1 -0.3633 -0.8927 -0.5091 23 1 1.8808 2.1361 0.0010 24 1 4.3950 1.4172 -0.0076 25 1 6.5377 -4.0867 -1.0156 26 1 7.7483 -2.7530 0.8691 27 1 9.2024 -1.0754 2.4873 28 1 1.8872 -2.1329 0.0104 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260857680.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:14 Heat of formation + Delta-G solvation = 35.700441 kcal Electronic energy + Delta-G solvation = -13816.289791 eV Core-core repulsion = 11412.826065 eV Total energy + Delta-G solvation = -2403.463727 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.07643 -41.29286 -35.81048 -33.68550 -32.36788 -30.71821 -29.25900 -27.55575 -26.12686 -22.29495 -21.96716 -20.63286 -20.05588 -19.02821 -17.81604 -16.84078 -16.22099 -16.07911 -15.78938 -15.05313 -14.49018 -14.16570 -13.68717 -13.60843 -13.24225 -12.99079 -12.95048 -12.85361 -12.74812 -12.49507 -11.71990 -11.57589 -11.33557 -9.84119 -9.53366 -9.10844 -8.51533 -8.37404 -6.10324 0.99935 1.38397 1.42456 1.54586 1.64238 2.12924 2.25689 2.28061 2.33675 3.03465 3.51789 4.15640 4.25954 4.37483 4.54500 4.55546 4.77442 4.84272 5.01644 5.18359 5.28736 5.31769 5.54649 5.69481 5.95122 6.07456 6.28209 6.42245 6.52290 6.70846 6.94136 7.02150 7.27488 8.50397 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.027142 B = 0.010174 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.366232 B = 2751.467214 C = 3642.675253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.453 5.453 3 C -0.003 4.003 4 C -0.216 4.216 5 C -0.083 4.083 6 C -0.167 4.167 7 O -0.212 6.212 8 C -0.070 4.070 9 C -0.244 4.244 10 C 0.007 3.993 11 C -0.456 4.456 12 H 0.067 0.933 13 C 0.023 3.977 14 N -0.847 5.847 15 Si 0.989 3.011 16 H -0.262 1.262 17 H -0.265 1.265 18 H -0.265 1.265 19 C -0.029 4.029 20 H 0.080 0.920 21 H 0.105 0.895 22 H 0.092 0.908 23 H 0.199 0.801 24 H 0.119 0.881 25 H 0.219 0.781 26 H 0.148 0.852 27 H 0.281 0.719 28 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.123 3.103 -1.589 11.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.130 5.130 3 C -0.132 4.132 4 C -0.241 4.241 5 C -0.090 4.090 6 C -0.215 4.215 7 O -0.114 6.114 8 C -0.137 4.137 9 C -0.265 4.265 10 C 0.004 3.996 11 C -0.487 4.487 12 H 0.086 0.914 13 C -0.187 4.187 14 N -0.476 5.476 15 Si 0.810 3.190 16 H -0.186 1.186 17 H -0.190 1.190 18 H -0.190 1.190 19 C -0.159 4.159 20 H 0.098 0.902 21 H 0.124 0.876 22 H 0.111 0.889 23 H 0.216 0.784 24 H 0.138 0.862 25 H 0.235 0.765 26 H 0.166 0.834 27 H 0.092 0.908 28 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.503 2.970 -1.745 12.008 hybrid contribution 0.969 0.184 0.606 1.158 sum -10.534 3.154 -1.139 11.055 Atomic orbital electron populations 1.22292 0.74612 1.05838 1.04213 1.43783 1.07661 1.04641 1.56881 1.21934 0.89352 0.92420 1.09467 1.21975 0.96774 0.93182 1.12193 1.18461 0.88853 0.91778 1.09921 1.19936 1.00470 0.96653 1.04402 1.83535 1.35195 1.38273 1.54367 1.24096 0.85753 1.01528 1.02315 1.23344 1.02543 0.98385 1.02201 1.19739 0.90944 0.94397 0.94527 1.18913 0.97425 1.13754 1.18658 0.91429 1.26745 0.94883 0.98485 0.98615 1.69890 1.03562 1.35162 1.39016 0.85057 0.78950 0.77710 0.77305 1.18559 1.18973 1.18952 1.22325 0.89532 0.91999 1.12074 0.90158 0.87606 0.88906 0.78385 0.86247 0.76455 0.83408 0.90828 0.81200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 11.05 127.77 1.41 2.63 15 2 N -0.45 -13.95 3.11 -545.58 -1.70 -15.64 15 3 C 0.00 -0.10 11.31 83.09 0.94 0.84 15 4 C -0.22 -9.52 10.50 23.62 0.25 -9.27 15 5 C -0.08 -4.10 6.04 -18.81 -0.11 -4.22 15 6 C -0.17 -9.47 7.31 25.10 0.18 -9.28 15 7 O -0.21 -11.38 10.56 -5.02 -0.05 -11.43 15 8 C -0.07 -3.45 11.96 66.87 0.80 -2.65 15 9 C -0.24 -13.80 9.87 23.64 0.23 -13.57 15 10 C 0.01 0.41 6.12 -19.73 -0.12 0.29 15 11 C -0.46 -27.25 9.05 23.21 0.21 -27.04 15 12 H 0.07 4.01 7.34 -2.91 -0.02 3.99 15 13 C 0.02 1.27 5.49 85.14 0.47 1.74 15 14 N -0.85 -47.20 10.52 21.78 0.23 -46.98 15 15 Si 0.99 41.72 29.56 68.60 2.03 43.74 15 16 H -0.26 -10.89 7.11 99.48 0.71 -10.18 15 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 18 H -0.26 -10.60 7.11 99.48 0.71 -9.90 15 19 C -0.03 -1.15 11.45 84.14 0.96 -0.18 15 20 H 0.08 1.20 8.14 -2.39 -0.02 1.19 15 21 H 0.11 1.26 8.13 -2.39 -0.02 1.24 15 22 H 0.09 1.35 8.13 -2.39 -0.02 1.33 15 23 H 0.20 4.53 8.06 -2.91 -0.02 4.51 15 24 H 0.12 5.48 8.06 -2.91 -0.02 5.46 15 25 H 0.22 8.10 8.06 -2.91 -0.02 8.07 15 26 H 0.15 8.48 6.17 -2.91 -0.02 8.46 15 27 H 0.28 14.14 8.30 -92.71 -0.77 13.37 15 28 H 0.17 5.99 8.06 -2.91 -0.02 5.97 15 Total: -1.00 -74.30 253.67 6.89 -67.41 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 1.16 Total: 23.61 kcal Atomic # 6 Polarization: -65.93 SS G_CDS: 5.22 Total: -60.71 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -1.47 Total: -62.62 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.05 Total: -11.43 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -74.30 6.89 -67.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260857680.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.109 kcal (2) G-P(sol) polarization free energy of solvation -74.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds