Wall clock time and date at job start Mon Mar 30 2020 02:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46950 * 2 1 4 4 C 1.50697 * 109.47363 * 240.00171 * 2 1 3 5 5 H 1.07999 * 119.99506 * 239.99821 * 4 2 1 6 6 C 1.37869 * 120.00200 * 59.99853 * 4 2 1 7 7 N 1.31521 * 120.00045 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00110 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46885 * 90.00067 * 8 6 4 10 10 H 1.48497 * 109.47415 * 210.00059 * 8 6 4 11 11 H 1.48496 * 109.47040 * 330.00300 * 8 6 4 12 12 C 1.50699 * 109.47068 * 119.99554 * 2 1 3 13 13 C 1.36665 * 120.10020 * 60.00527 * 12 2 1 14 14 C 1.38739 * 120.51433 * 180.02562 * 13 12 2 15 15 C 1.37845 * 120.59999 * 0.03845 * 14 13 12 16 16 C 1.38929 * 119.79587 * 359.97438 * 15 14 13 17 17 O 1.34827 * 133.46028 * 180.02562 * 16 15 14 18 18 N 1.41360 * 109.33439 * 179.97438 * 17 16 15 19 19 C 1.29740 * 109.74865 * 359.97438 * 18 17 16 20 20 C 1.39643 * 120.10975 * 240.02631 * 12 2 1 21 21 H 1.09001 * 109.46947 * 60.00182 * 1 2 3 22 22 H 1.09000 * 109.47116 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47535 * 300.00493 * 1 2 3 24 24 H 0.96999 * 119.99742 * 180.02562 * 7 6 4 25 25 H 1.08002 * 119.74239 * 0.02562 * 13 12 2 26 26 H 1.08005 * 119.70242 * 180.02562 * 14 13 12 27 27 H 1.08000 * 120.10159 * 179.70285 * 15 14 13 28 28 H 1.07997 * 126.29396 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4826 7 7 0.9435 0.8303 -2.6034 8 14 2.3227 -1.1195 -4.0079 9 1 1.3450 -2.1616 -4.4123 10 1 2.4875 -0.1402 -5.1120 11 1 3.6310 -1.7565 -3.7118 12 6 2.0323 -0.7103 1.2305 13 6 1.7034 -2.0187 1.4489 14 6 2.1607 -2.6808 2.5791 15 6 2.9532 -2.0307 3.5007 16 6 3.2988 -0.7005 3.2977 17 8 4.0388 0.1828 3.9978 18 7 4.0595 1.4207 3.3156 19 6 3.3624 1.3319 2.2250 20 6 2.8348 -0.0336 2.1514 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.7090 1.1614 -3.4844 25 1 1.0828 -2.5413 0.7361 26 1 1.8932 -3.7150 2.7384 27 1 3.3007 -2.5525 4.3801 28 1 3.2006 2.1193 1.5038 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261075848.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:28 Heat of formation + Delta-G solvation = 51.806245 kcal Electronic energy + Delta-G solvation = -14027.856197 eV Core-core repulsion = 11625.090870 eV Total energy + Delta-G solvation = -2402.765327 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.24149 -37.64884 -34.52399 -33.11339 -31.33367 -29.57225 -28.20371 -25.25969 -23.11062 -22.49015 -21.78522 -19.65280 -17.02642 -16.62219 -16.16246 -15.44061 -14.95367 -14.66821 -13.63894 -13.40285 -13.09560 -12.57610 -11.99751 -11.77014 -11.53824 -11.23803 -11.10369 -10.97896 -10.95634 -10.70558 -10.35004 -10.22347 -9.58692 -9.14737 -8.50198 -8.38392 -7.83613 -6.13846 -4.21741 1.12471 1.85314 2.53570 2.99327 3.23010 3.30620 3.34090 4.15160 4.35479 4.66137 4.90450 5.11749 5.17718 5.40823 5.66712 5.82510 5.95906 6.18640 6.39012 6.54595 6.66051 6.74251 6.92598 7.00101 7.07573 7.25444 7.56927 7.66000 7.76827 7.94274 8.21474 8.80433 9.43968 10.91730 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.035788 B = 0.009021 C = 0.008384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.200895 B = 3103.162822 C = 3339.052120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.067 3.933 3 H 0.038 0.962 4 C -0.512 4.512 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.053 3.947 13 C -0.153 4.153 14 C -0.058 4.058 15 C -0.161 4.161 16 C 0.078 3.922 17 O -0.111 6.111 18 N -0.312 5.312 19 C 0.128 3.872 20 C -0.209 4.209 21 H 0.089 0.911 22 H 0.032 0.968 23 H 0.010 0.990 24 H 0.263 0.737 25 H 0.135 0.865 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 -3.633 6.756 7.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.048 3.952 3 H 0.056 0.944 4 C -0.550 4.550 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.050 3.950 13 C -0.171 4.171 14 C -0.077 4.077 15 C -0.181 4.181 16 C 0.025 3.975 17 O -0.119 6.119 18 N -0.056 5.056 19 C -0.072 4.072 20 C -0.213 4.213 21 H 0.107 0.893 22 H 0.051 0.949 23 H 0.029 0.971 24 H 0.073 0.927 25 H 0.152 0.848 26 H 0.148 0.852 27 H 0.145 0.855 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.327 -2.792 7.497 8.109 hybrid contribution -0.111 -0.837 -1.437 1.667 sum 1.217 -3.630 6.059 7.167 Atomic orbital electron populations 1.21802 0.96957 0.99692 1.00603 1.17996 0.93285 0.95665 0.88205 0.94443 1.21049 1.31710 1.12675 0.89546 0.92227 1.24943 0.94867 0.94922 0.98999 1.69873 1.36354 1.22665 1.23706 0.86544 0.79364 0.79426 0.82445 1.20527 1.21128 1.19836 1.20143 0.88209 0.93247 0.93361 1.20751 1.03528 0.94715 0.98139 1.21106 0.94328 0.99294 0.92977 1.19752 1.05418 0.90174 1.02740 1.20278 0.92942 0.92651 0.91646 1.89038 1.62304 1.17839 1.42768 1.79756 1.20445 0.97048 1.08376 1.26107 0.90275 0.96615 0.94227 1.20800 1.08410 0.93145 0.98925 0.89276 0.94911 0.97087 0.92744 0.84762 0.85217 0.85544 0.77529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.78 37.15 0.33 -2.64 15 2 C 0.07 1.55 2.48 -92.93 -0.23 1.32 15 3 H 0.04 0.91 7.20 -51.92 -0.37 0.54 15 4 C -0.51 -13.05 8.23 -34.44 -0.28 -13.34 15 5 H 0.06 1.53 7.60 -52.49 -0.40 1.13 15 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 15 7 N -0.89 -23.76 11.32 55.43 0.63 -23.13 15 8 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 15 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 15 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 12 C 0.05 1.08 4.74 -104.67 -0.50 0.58 15 13 C -0.15 -2.79 8.63 -39.96 -0.35 -3.14 15 14 C -0.06 -0.88 10.02 -39.54 -0.40 -1.27 15 15 C -0.16 -2.55 10.07 -39.47 -0.40 -2.95 15 16 C 0.08 1.46 7.48 -38.48 -0.29 1.17 15 17 O -0.11 -2.14 12.06 7.66 0.09 -2.05 15 18 N -0.31 -5.87 12.81 31.94 0.41 -5.46 15 19 C 0.13 2.31 11.77 -15.07 -0.18 2.13 15 20 C -0.21 -4.11 6.14 -105.16 -0.65 -4.76 15 21 H 0.09 2.20 6.07 -51.93 -0.32 1.88 15 22 H 0.03 0.69 7.37 -51.93 -0.38 0.31 15 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 24 H 0.26 6.74 8.31 -40.82 -0.34 6.40 15 25 H 0.13 2.40 7.53 -52.49 -0.40 2.01 15 26 H 0.13 1.50 8.06 -52.48 -0.42 1.07 15 27 H 0.13 1.63 8.06 -52.49 -0.42 1.21 15 28 H 0.21 3.14 7.75 -52.49 -0.41 2.73 15 LS Contribution 246.80 15.07 3.72 3.72 Total: -1.00 -27.78 246.80 -5.88 -33.66 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -2.68 Total: -0.66 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.03 Total: -21.31 kcal Atomic # 7 Polarization: -29.63 SS G_CDS: 1.04 Total: -28.59 kcal Atomic # 8 Polarization: -2.14 SS G_CDS: 0.09 Total: -2.05 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.78 -5.88 -33.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075848.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.465 kcal (2) G-P(sol) polarization free energy of solvation -27.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds