Wall clock time and date at job start Mon Mar 30 2020 03:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99933 * 2 1 4 4 H 1.48498 * 109.47659 * 270.00102 * 3 2 1 5 5 H 1.48500 * 109.47306 * 30.00244 * 3 2 1 6 6 H 1.48507 * 109.47054 * 150.00074 * 3 2 1 7 7 C 1.37874 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00564 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99910 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47640 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47603 * 180.02562 * 10 9 7 12 12 C 1.36014 * 120.38407 * 265.00174 * 11 10 9 13 13 C 1.40555 * 119.74799 * 180.02562 * 12 11 10 14 14 C 1.34955 * 120.36424 * 359.97438 * 13 12 11 15 15 N 1.36380 * 120.50903 * 0.02562 * 14 13 12 16 16 C 1.36065 * 133.66624 * 179.97438 * 15 14 13 17 17 N 1.30806 * 107.51114 * 180.02562 * 16 15 14 18 18 N 1.28676 * 110.28898 * 359.97438 * 17 16 15 19 19 C 1.32303 * 109.48555 * 0.02562 * 18 17 16 20 20 H 0.97005 * 120.00283 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46689 * 60.00498 * 9 7 2 22 22 H 1.08996 * 109.47809 * 300.00862 * 9 7 2 23 23 H 1.08998 * 109.47113 * 60.00009 * 10 9 7 24 24 H 1.09003 * 109.46687 * 300.00732 * 10 9 7 25 25 H 1.08004 * 120.12970 * 359.97438 * 12 11 10 26 26 H 1.07998 * 119.81794 * 179.72293 * 13 12 11 27 27 H 1.07994 * 119.74736 * 179.97438 * 14 13 12 28 28 H 1.07999 * 126.24694 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 6 1.2360 -5.6144 1.1674 13 6 0.5327 -6.8312 1.1512 14 6 0.1101 -7.3594 -0.0165 15 7 0.3596 -6.7212 -1.1957 16 6 0.0680 -7.0003 -2.4951 17 7 0.5548 -6.0300 -3.2249 18 7 1.1334 -5.1567 -2.4776 19 6 1.0447 -5.5309 -1.2117 20 1 -0.4851 0.8401 0.0004 21 1 0.6242 -2.5566 -0.8904 22 1 0.6247 -2.5571 0.8895 23 1 2.8719 -3.6043 0.8894 24 1 2.8720 -3.6042 -0.8905 25 1 1.5728 -5.1955 2.1042 26 1 0.3328 -7.3483 2.0781 27 1 -0.4292 -8.2951 -0.0174 28 1 -0.4677 -7.8651 -2.8578 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261222211.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:11 Heat of formation + Delta-G solvation = 74.343757 kcal Electronic energy + Delta-G solvation = -13740.692192 eV Core-core repulsion = 11371.196916 eV Total energy + Delta-G solvation = -2369.495276 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.43944 -39.26719 -36.63192 -34.88352 -32.93049 -31.64102 -30.07381 -27.18580 -24.78667 -24.43137 -23.58886 -21.95038 -18.94786 -18.45350 -18.30141 -17.41806 -16.71553 -16.51299 -15.64005 -15.34447 -14.63377 -14.39357 -13.64089 -13.50410 -13.23349 -13.05398 -12.83561 -12.71283 -12.31195 -12.10599 -11.82399 -11.50603 -11.39205 -11.16702 -10.58473 -10.51302 -8.92952 -8.20233 -6.32319 -0.22318 0.21432 1.39174 1.42333 1.47154 1.52837 1.81736 2.38440 2.44533 3.12881 3.20542 3.48981 3.81361 4.00332 4.03114 4.04900 4.52394 4.68650 4.77111 4.80766 5.02716 5.04126 5.17364 5.31619 5.46046 5.51316 5.73804 5.81689 6.07666 6.21199 6.83777 7.36914 7.56946 8.91809 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.042711 B = 0.007154 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.416906 B = 3912.860607 C = 4260.397088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.043 3.957 10 C -0.055 4.055 11 C -0.073 4.073 12 C -0.085 4.085 13 C -0.124 4.124 14 C 0.050 3.950 15 N -0.395 5.395 16 C 0.126 3.874 17 N -0.310 5.310 18 N -0.350 5.350 19 C 0.186 3.814 20 H 0.263 0.737 21 H -0.026 1.026 22 H -0.002 1.002 23 H 0.088 0.912 24 H 0.048 0.952 25 H 0.165 0.835 26 H 0.206 0.794 27 H 0.225 0.775 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -18.841 5.199 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.580 4.580 8 H 0.082 0.918 9 C 0.006 3.994 10 C -0.093 4.093 11 C -0.077 4.077 12 C -0.109 4.109 13 C -0.145 4.145 14 C -0.071 4.071 15 N -0.075 5.075 16 C -0.158 4.158 17 N -0.147 5.147 18 N -0.195 5.195 19 C -0.064 4.064 20 H 0.072 0.928 21 H -0.008 1.008 22 H 0.017 0.983 23 H 0.107 0.893 24 H 0.067 0.933 25 H 0.183 0.817 26 H 0.222 0.778 27 H 0.241 0.759 28 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -0.269 -17.930 3.755 18.321 hybrid contribution -0.203 0.552 0.567 0.817 sum -0.473 -17.378 4.321 17.914 Atomic orbital electron populations 1.70119 1.07999 1.27774 1.51728 1.26018 0.95756 1.03529 0.94571 0.85404 0.78890 0.78156 0.78334 1.20349 1.20412 1.18066 1.21682 0.93679 0.92089 1.50560 0.91786 1.18831 0.93864 0.92411 0.94278 1.20410 0.97217 0.89654 1.01970 1.19390 1.01161 0.97844 0.89268 1.21562 0.96770 0.95120 0.97452 1.21525 0.98085 0.95487 0.99376 1.22623 1.02361 1.00600 0.81483 1.44174 1.36856 1.17267 1.09213 1.27405 1.06573 1.04114 0.77664 1.74038 1.11209 1.01151 1.28332 1.74920 1.23078 1.22439 0.99111 1.22420 0.99838 0.88012 0.96159 0.92804 1.00803 0.98335 0.89327 0.93299 0.81747 0.77761 0.75852 0.70460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.65 13.29 21.45 0.28 -59.37 15 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 15 3 Si 0.97 45.98 29.54 68.60 2.03 48.01 15 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 15 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 15 7 C -0.54 -32.40 9.11 25.60 0.23 -32.16 15 8 H 0.06 3.63 7.74 -2.91 -0.02 3.61 15 9 C 0.04 2.44 4.95 29.85 0.15 2.59 15 10 C -0.05 -2.43 5.31 29.85 0.16 -2.27 15 11 C -0.07 -2.73 5.15 -19.75 -0.10 -2.83 15 12 C -0.08 -2.19 9.70 22.32 0.22 -1.97 15 13 C -0.12 -2.00 9.98 22.08 0.22 -1.78 15 14 C 0.05 0.82 10.99 83.23 0.91 1.73 15 15 N -0.40 -11.02 2.95 -356.38 -1.05 -12.07 15 16 C 0.13 3.36 12.97 179.84 2.33 5.69 15 17 N -0.31 -12.25 12.19 -59.48 -0.72 -12.97 15 18 N -0.35 -16.35 12.31 -55.39 -0.68 -17.03 15 19 C 0.19 7.39 7.64 134.07 1.02 8.41 15 20 H 0.26 15.69 8.31 -92.70 -0.77 14.92 15 21 H -0.03 -1.73 8.14 -2.38 -0.02 -1.75 15 22 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 15 23 H 0.09 3.45 8.05 -2.39 -0.02 3.43 15 24 H 0.05 2.33 8.13 -2.39 -0.02 2.31 15 25 H 0.16 3.51 8.06 -2.91 -0.02 3.49 15 26 H 0.21 1.14 8.06 -2.91 -0.02 1.12 15 27 H 0.23 0.95 8.06 -2.91 -0.02 0.93 15 28 H 0.28 3.44 8.06 -2.91 -0.02 3.41 15 Total: -1.00 -86.00 253.61 6.62 -79.38 By element: Atomic # 1 Polarization: -4.90 SS G_CDS: 1.16 Total: -3.74 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 5.61 Total: -22.21 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -2.17 Total: -101.44 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -86.00 6.62 -79.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222211.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.722 kcal (2) G-P(sol) polarization free energy of solvation -85.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds