Wall clock time and date at job start Mon Mar 30 2020 03:08:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86800 * 119.99933 * 2 1
4 4 H 1.48498 * 109.47659 * 270.00102 * 3 2 1
5 5 H 1.48500 * 109.47306 * 30.00244 * 3 2 1
6 6 H 1.48507 * 109.47054 * 150.00074 * 3 2 1
7 7 C 1.37874 * 120.00375 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00564 * 180.02562 * 7 2 1
9 9 C 1.50699 * 119.99910 * 359.97438 * 7 2 1
10 10 C 1.52999 * 109.47640 * 180.02562 * 9 7 2
11 11 C 1.50699 * 109.47603 * 180.02562 * 10 9 7
12 12 C 1.36014 * 120.38407 * 265.00174 * 11 10 9
13 13 C 1.40555 * 119.74799 * 180.02562 * 12 11 10
14 14 C 1.34955 * 120.36424 * 359.97438 * 13 12 11
15 15 N 1.36380 * 120.50903 * 0.02562 * 14 13 12
16 16 C 1.36065 * 133.66624 * 179.97438 * 15 14 13
17 17 N 1.30806 * 107.51114 * 180.02562 * 16 15 14
18 18 N 1.28676 * 110.28898 * 359.97438 * 17 16 15
19 19 C 1.32303 * 109.48555 * 0.02562 * 18 17 16
20 20 H 0.97005 * 120.00283 * 359.97438 * 1 2 3
21 21 H 1.09007 * 109.46689 * 60.00498 * 9 7 2
22 22 H 1.08996 * 109.47809 * 300.00862 * 9 7 2
23 23 H 1.08998 * 109.47113 * 60.00009 * 10 9 7
24 24 H 1.09003 * 109.46687 * 300.00732 * 10 9 7
25 25 H 1.08004 * 120.12970 * 359.97438 * 12 11 10
26 26 H 1.07998 * 119.81794 * 179.72293 * 13 12 11
27 27 H 1.07994 * 119.74736 * 179.97438 * 14 13 12
28 28 H 1.07999 * 126.24694 * 0.02562 * 16 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0466 -1.4000
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4402 0.7001
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0001
9 6 1.2511 -2.4991 -0.0005
10 6 2.2453 -3.6621 -0.0005
11 6 1.4919 -4.9672 -0.0012
12 6 1.2360 -5.6144 1.1674
13 6 0.5327 -6.8312 1.1512
14 6 0.1101 -7.3594 -0.0165
15 7 0.3596 -6.7212 -1.1957
16 6 0.0680 -7.0003 -2.4951
17 7 0.5548 -6.0300 -3.2249
18 7 1.1334 -5.1567 -2.4776
19 6 1.0447 -5.5309 -1.2117
20 1 -0.4851 0.8401 0.0004
21 1 0.6242 -2.5566 -0.8904
22 1 0.6247 -2.5571 0.8895
23 1 2.8719 -3.6043 0.8894
24 1 2.8720 -3.6042 -0.8905
25 1 1.5728 -5.1955 2.1042
26 1 0.3328 -7.3483 2.0781
27 1 -0.4292 -8.2951 -0.0174
28 1 -0.4677 -7.8651 -2.8578
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261222211.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:11
Heat of formation + Delta-G solvation = 74.343757 kcal
Electronic energy + Delta-G solvation = -13740.692192 eV
Core-core repulsion = 11371.196916 eV
Total energy + Delta-G solvation = -2369.495276 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 217.091 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-44.43944 -39.26719 -36.63192 -34.88352 -32.93049 -31.64102 -30.07381 -27.18580
-24.78667 -24.43137 -23.58886 -21.95038 -18.94786 -18.45350 -18.30141 -17.41806
-16.71553 -16.51299 -15.64005 -15.34447 -14.63377 -14.39357 -13.64089 -13.50410
-13.23349 -13.05398 -12.83561 -12.71283 -12.31195 -12.10599 -11.82399 -11.50603
-11.39205 -11.16702 -10.58473 -10.51302 -8.92952 -8.20233 -6.32319 -0.22318
0.21432 1.39174 1.42333 1.47154 1.52837 1.81736 2.38440 2.44533
3.12881 3.20542 3.48981 3.81361 4.00332 4.03114 4.04900 4.52394
4.68650 4.77111 4.80766 5.02716 5.04126 5.17364 5.31619 5.46046
5.51316 5.73804 5.81689 6.07666 6.21199 6.83777 7.36914 7.56946
8.91809
Molecular weight = 217.09amu
Principal moments of inertia in cm(-1)
A = 0.042711 B = 0.007154 C = 0.006571
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 655.416906 B = 3912.860607 C = 4260.397088
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.001 4.001
3 Si 0.968 3.032
4 H -0.278 1.278
5 H -0.279 1.279
6 H -0.257 1.257
7 C -0.542 4.542
8 H 0.064 0.936
9 C 0.043 3.957
10 C -0.055 4.055
11 C -0.073 4.073
12 C -0.085 4.085
13 C -0.124 4.124
14 C 0.050 3.950
15 N -0.395 5.395
16 C 0.126 3.874
17 N -0.310 5.310
18 N -0.350 5.350
19 C 0.186 3.814
20 H 0.263 0.737
21 H -0.026 1.026
22 H -0.002 1.002
23 H 0.088 0.912
24 H 0.048 0.952
25 H 0.165 0.835
26 H 0.206 0.794
27 H 0.225 0.775
28 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.452 -18.841 5.199 19.551
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.199 4.199
3 Si 0.792 3.208
4 H -0.203 1.203
5 H -0.204 1.204
6 H -0.181 1.181
7 C -0.580 4.580
8 H 0.082 0.918
9 C 0.006 3.994
10 C -0.093 4.093
11 C -0.077 4.077
12 C -0.109 4.109
13 C -0.145 4.145
14 C -0.071 4.071
15 N -0.075 5.075
16 C -0.158 4.158
17 N -0.147 5.147
18 N -0.195 5.195
19 C -0.064 4.064
20 H 0.072 0.928
21 H -0.008 1.008
22 H 0.017 0.983
23 H 0.107 0.893
24 H 0.067 0.933
25 H 0.183 0.817
26 H 0.222 0.778
27 H 0.241 0.759
28 H 0.295 0.705
Dipole moment (debyes) X Y Z Total
from point charges -0.269 -17.930 3.755 18.321
hybrid contribution -0.203 0.552 0.567 0.817
sum -0.473 -17.378 4.321 17.914
Atomic orbital electron populations
1.70119 1.07999 1.27774 1.51728 1.26018 0.95756 1.03529 0.94571
0.85404 0.78890 0.78156 0.78334 1.20349 1.20412 1.18066 1.21682
0.93679 0.92089 1.50560 0.91786 1.18831 0.93864 0.92411 0.94278
1.20410 0.97217 0.89654 1.01970 1.19390 1.01161 0.97844 0.89268
1.21562 0.96770 0.95120 0.97452 1.21525 0.98085 0.95487 0.99376
1.22623 1.02361 1.00600 0.81483 1.44174 1.36856 1.17267 1.09213
1.27405 1.06573 1.04114 0.77664 1.74038 1.11209 1.01151 1.28332
1.74920 1.23078 1.22439 0.99111 1.22420 0.99838 0.88012 0.96159
0.92804 1.00803 0.98335 0.89327 0.93299 0.81747 0.77761 0.75852
0.70460
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -59.65 13.29 21.45 0.28 -59.37 15
2 C 0.00 -0.08 5.46 84.65 0.46 0.38 15
3 Si 0.97 45.98 29.54 68.60 2.03 48.01 15
4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15
5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 15
6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 15
7 C -0.54 -32.40 9.11 25.60 0.23 -32.16 15
8 H 0.06 3.63 7.74 -2.91 -0.02 3.61 15
9 C 0.04 2.44 4.95 29.85 0.15 2.59 15
10 C -0.05 -2.43 5.31 29.85 0.16 -2.27 15
11 C -0.07 -2.73 5.15 -19.75 -0.10 -2.83 15
12 C -0.08 -2.19 9.70 22.32 0.22 -1.97 15
13 C -0.12 -2.00 9.98 22.08 0.22 -1.78 15
14 C 0.05 0.82 10.99 83.23 0.91 1.73 15
15 N -0.40 -11.02 2.95 -356.38 -1.05 -12.07 15
16 C 0.13 3.36 12.97 179.84 2.33 5.69 15
17 N -0.31 -12.25 12.19 -59.48 -0.72 -12.97 15
18 N -0.35 -16.35 12.31 -55.39 -0.68 -17.03 15
19 C 0.19 7.39 7.64 134.07 1.02 8.41 15
20 H 0.26 15.69 8.31 -92.70 -0.77 14.92 15
21 H -0.03 -1.73 8.14 -2.38 -0.02 -1.75 15
22 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 15
23 H 0.09 3.45 8.05 -2.39 -0.02 3.43 15
24 H 0.05 2.33 8.13 -2.39 -0.02 2.31 15
25 H 0.16 3.51 8.06 -2.91 -0.02 3.49 15
26 H 0.21 1.14 8.06 -2.91 -0.02 1.12 15
27 H 0.23 0.95 8.06 -2.91 -0.02 0.93 15
28 H 0.28 3.44 8.06 -2.91 -0.02 3.41 15
Total: -1.00 -86.00 253.61 6.62 -79.38
By element:
Atomic # 1 Polarization: -4.90 SS G_CDS: 1.16 Total: -3.74 kcal
Atomic # 6 Polarization: -27.82 SS G_CDS: 5.61 Total: -22.21 kcal
Atomic # 7 Polarization: -99.27 SS G_CDS: -2.17 Total: -101.44 kcal
Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal
Total: -86.00 6.62 -79.38 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261222211.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 153.722 kcal
(2) G-P(sol) polarization free energy of solvation -85.996 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.726 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.618 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.378 kcal
(6) G-S(sol) free energy of system = (1) + (5) 74.344 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds