Wall clock time and date at job start Mon Mar 30 2020 03:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 7 12 12 C 1.36193 * 120.36583 * 265.00376 * 11 10 9 13 13 C 1.40269 * 119.61904 * 179.97438 * 12 11 10 14 14 C 1.35187 * 120.21726 * 0.02562 * 13 12 11 15 15 N 1.35927 * 120.56510 * 359.97438 * 14 13 12 16 16 N 1.40209 * 133.18880 * 180.02562 * 15 14 13 17 17 C 1.31256 * 107.09102 * 180.02562 * 16 15 14 18 18 N 1.32514 * 109.64055 * 359.97438 * 17 16 15 19 19 C 1.32843 * 109.67689 * 359.75508 * 18 17 16 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 22 22 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 25 25 H 1.07999 * 120.18967 * 359.97438 * 12 11 10 26 26 H 1.08007 * 119.89142 * 179.97438 * 13 12 11 27 27 H 1.08002 * 119.71596 * 180.02562 * 14 13 12 28 28 H 1.08004 * 125.17819 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9672 0.0012 12 6 1.2366 -5.6143 1.1721 13 6 0.5335 -6.8279 1.1545 14 6 0.1118 -7.3530 -0.0177 15 7 0.3621 -6.7141 -1.1911 16 7 0.0568 -7.0077 -2.5276 17 6 0.5465 -6.0333 -3.2582 18 7 1.1396 -5.1441 -2.4749 19 6 1.0395 -5.5276 -1.2070 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8902 23 1 2.8720 -3.6043 -0.8894 24 1 2.8720 -3.6043 0.8905 25 1 1.5737 -5.1954 2.1087 26 1 0.3291 -7.3450 2.0805 27 1 -0.4292 -8.2877 -0.0218 28 1 0.4760 -5.9662 -4.3338 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261231921.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:10 Heat of formation + Delta-G solvation = 106.288245 kcal Electronic energy + Delta-G solvation = -13718.432294 eV Core-core repulsion = 11350.322235 eV Total energy + Delta-G solvation = -2368.110059 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.38360 -37.80491 -34.85615 -32.82994 -31.06540 -30.52123 -28.80093 -25.35429 -23.23749 -23.20901 -21.74416 -20.17136 -17.38508 -17.03182 -16.33355 -15.82753 -15.75896 -14.45762 -13.94071 -13.93664 -12.94058 -12.58001 -12.44102 -12.08851 -12.01162 -11.47858 -11.19403 -10.87901 -10.62667 -10.42995 -9.88185 -9.72618 -9.48686 -9.32215 -9.10373 -8.31496 -7.79611 -5.96534 -3.99284 0.94437 1.17237 2.35188 2.96684 3.36373 3.40588 3.43113 3.68201 4.29240 4.36398 4.49314 4.87044 4.95053 5.18874 5.39458 5.48532 5.56013 5.96740 6.20757 6.38903 6.54020 6.56213 6.63408 6.67714 7.00157 7.04912 7.68542 7.84088 8.02524 8.25121 8.42342 9.06729 9.64255 11.14764 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.042108 B = 0.007161 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.804045 B = 3908.894947 C = 4266.557184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.033 3.967 10 C -0.070 4.070 11 C -0.034 4.034 12 C -0.091 4.091 13 C -0.141 4.141 14 C 0.081 3.919 15 N -0.285 5.285 16 N -0.359 5.359 17 C 0.229 3.771 18 N -0.530 5.530 19 C 0.287 3.713 20 H 0.261 0.739 21 H 0.022 0.978 22 H 0.015 0.985 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.149 0.851 26 H 0.156 0.844 27 H 0.164 0.836 28 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.120 -13.832 1.626 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.108 4.108 11 C -0.037 4.037 12 C -0.117 4.117 13 C -0.163 4.163 14 C -0.047 4.047 15 N -0.060 5.060 16 N -0.191 5.191 17 C -0.071 4.071 18 N -0.259 5.259 19 C 0.034 3.966 20 H 0.070 0.930 21 H 0.040 0.960 22 H 0.034 0.966 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.166 0.834 26 H 0.173 0.827 27 H 0.181 0.819 28 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.731 -14.015 1.001 14.070 hybrid contribution 0.240 0.887 0.094 0.924 sum 0.971 -13.128 1.095 13.209 Atomic orbital electron populations 1.69961 1.06096 1.26700 1.50693 1.25004 0.94817 0.99212 0.95288 0.86644 0.79558 0.83082 0.78631 1.20173 1.21353 1.20236 1.21161 0.93017 0.90768 1.50820 0.92534 1.19057 0.93592 0.90222 0.97577 1.20804 0.98367 0.89352 1.02241 1.19715 0.98249 0.98086 0.87683 1.21154 0.97855 0.94206 0.98486 1.20926 1.00984 0.97525 0.96877 1.21326 1.02200 0.99317 0.81812 1.47700 1.35387 1.16521 1.06351 1.78398 1.30688 1.25945 0.84104 1.26125 0.92373 0.87302 1.01336 1.70973 1.27455 1.29204 0.98275 1.21725 0.94549 0.85532 0.94764 0.92963 0.95997 0.96640 0.90900 0.91341 0.83371 0.82659 0.81866 0.76199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 15 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 9 C 0.03 0.85 4.96 -27.88 -0.14 0.71 15 10 C -0.07 -1.45 5.31 -27.88 -0.15 -1.60 15 11 C -0.03 -0.62 5.15 -104.44 -0.54 -1.16 15 12 C -0.09 -1.28 9.70 -39.55 -0.38 -1.67 15 13 C -0.14 -1.58 9.99 -39.90 -0.40 -1.97 15 14 C 0.08 1.03 11.20 -16.82 -0.19 0.84 15 15 N -0.29 -4.86 3.90 -12.34 -0.05 -4.91 15 16 N -0.36 -6.17 12.78 29.25 0.37 -5.80 15 17 C 0.23 3.84 12.98 -91.99 -1.19 2.64 15 18 N -0.53 -10.74 11.25 -13.99 -0.16 -10.90 15 19 C 0.29 5.57 7.60 -156.33 -1.19 4.38 15 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 21 H 0.02 0.63 8.14 -51.93 -0.42 0.21 15 22 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 15 23 H 0.07 1.57 8.13 -51.93 -0.42 1.15 15 24 H 0.07 1.28 8.05 -51.93 -0.42 0.86 15 25 H 0.15 1.75 8.06 -52.49 -0.42 1.32 15 26 H 0.16 1.07 8.06 -52.48 -0.42 0.65 15 27 H 0.16 1.50 8.06 -52.49 -0.42 1.08 15 28 H 0.22 2.62 8.06 -52.48 -0.42 2.20 15 LS Contribution 254.29 15.07 3.83 3.83 Total: -1.00 -34.25 254.29 -7.79 -42.04 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -2.92 Total: -3.19 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -4.59 Total: -11.29 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.90 Total: -48.15 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.25 -7.79 -42.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231921.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.328 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds