Wall clock time and date at job start Mon Mar 30 2020 03:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 7 12 12 C 1.36193 * 120.36583 * 265.00376 * 11 10 9 13 13 C 1.40269 * 119.61904 * 179.97438 * 12 11 10 14 14 C 1.35187 * 120.21726 * 0.02562 * 13 12 11 15 15 N 1.35927 * 120.56510 * 359.97438 * 14 13 12 16 16 N 1.40209 * 133.18880 * 180.02562 * 15 14 13 17 17 C 1.31256 * 107.09102 * 180.02562 * 16 15 14 18 18 N 1.32514 * 109.64055 * 359.97438 * 17 16 15 19 19 C 1.32843 * 109.67689 * 359.75508 * 18 17 16 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 22 22 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 25 25 H 1.07999 * 120.18967 * 359.97438 * 12 11 10 26 26 H 1.08007 * 119.89142 * 179.97438 * 13 12 11 27 27 H 1.08002 * 119.71596 * 180.02562 * 14 13 12 28 28 H 1.08004 * 125.17819 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9672 0.0012 12 6 1.2366 -5.6143 1.1721 13 6 0.5335 -6.8279 1.1545 14 6 0.1118 -7.3530 -0.0177 15 7 0.3621 -6.7141 -1.1911 16 7 0.0568 -7.0077 -2.5276 17 6 0.5465 -6.0333 -3.2582 18 7 1.1396 -5.1441 -2.4749 19 6 1.0395 -5.5276 -1.2070 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8902 23 1 2.8720 -3.6043 -0.8894 24 1 2.8720 -3.6043 0.8905 25 1 1.5737 -5.1954 2.1087 26 1 0.3291 -7.3450 2.0805 27 1 -0.4292 -8.2877 -0.0218 28 1 0.4760 -5.9662 -4.3338 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261231921.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:10 Heat of formation + Delta-G solvation = 85.187400 kcal Electronic energy + Delta-G solvation = -13719.347295 eV Core-core repulsion = 11350.322235 eV Total energy + Delta-G solvation = -2369.025060 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.62483 -39.00550 -36.43471 -34.73070 -32.57934 -31.81402 -30.33382 -27.15048 -24.65275 -24.43455 -23.36225 -21.69850 -18.72619 -18.42728 -18.18225 -17.14028 -16.79495 -16.48854 -15.32502 -15.14955 -14.61645 -14.36486 -13.76662 -13.55802 -13.33527 -13.11000 -12.81783 -12.71417 -12.26412 -12.03575 -11.75571 -11.38414 -11.18845 -11.06357 -10.54472 -10.47520 -9.07335 -8.17542 -6.29258 -0.20628 -0.03085 1.21751 1.41522 1.45607 1.53040 1.76926 2.41030 2.47368 3.11457 3.15802 3.20277 3.86895 3.89871 4.01456 4.35204 4.51541 4.67027 4.83743 4.97534 5.06717 5.18949 5.33004 5.40939 5.46012 5.52305 5.74838 5.84069 5.88829 6.24260 6.86929 6.98708 7.39868 8.94173 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.042108 B = 0.007161 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.804045 B = 3908.894947 C = 4266.557184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.043 3.957 10 C -0.051 4.051 11 C -0.086 4.086 12 C -0.062 4.062 13 C -0.125 4.125 14 C 0.078 3.922 15 N -0.292 5.292 16 N -0.373 5.373 17 C 0.226 3.774 18 N -0.586 5.586 19 C 0.262 3.738 20 H 0.263 0.737 21 H -0.024 1.024 22 H -0.003 1.003 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.176 0.824 26 H 0.214 0.786 27 H 0.204 0.796 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 -15.100 3.444 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.006 3.994 10 C -0.089 4.089 11 C -0.089 4.089 12 C -0.088 4.088 13 C -0.146 4.146 14 C -0.049 4.049 15 N -0.066 5.066 16 N -0.205 5.205 17 C -0.073 4.073 18 N -0.316 5.316 19 C 0.010 3.990 20 H 0.071 0.929 21 H -0.006 1.006 22 H 0.016 0.984 23 H 0.070 0.930 24 H 0.108 0.892 25 H 0.193 0.807 26 H 0.230 0.770 27 H 0.221 0.779 28 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 1.185 -15.307 2.829 15.611 hybrid contribution 0.038 1.148 -0.376 1.208 sum 1.223 -14.159 2.453 14.422 Atomic orbital electron populations 1.70111 1.07974 1.27769 1.51779 1.25992 0.95707 1.03430 0.94660 0.85483 0.78238 0.77907 0.79310 1.19549 1.21001 1.18457 1.21654 0.93674 0.92059 1.50482 0.91750 1.18838 0.93889 0.92344 0.94369 1.20397 0.97124 0.89206 1.02181 1.19558 1.01761 0.98439 0.89179 1.21678 0.95024 0.94229 0.97821 1.21575 0.98553 0.96004 0.98470 1.22361 1.01351 1.00305 0.80849 1.47955 1.35129 1.16180 1.07306 1.78298 1.31432 1.26319 0.84477 1.26806 0.91328 0.86453 1.02733 1.70900 1.29811 1.31299 0.99622 1.21872 0.95514 0.86725 0.94856 0.92871 1.00564 0.98425 0.92953 0.89245 0.80687 0.76959 0.77880 0.72907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.58 13.29 21.45 0.28 -58.30 15 2 C 0.00 -0.03 5.46 84.66 0.46 0.44 15 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 15 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 15 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 15 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 15 7 C -0.54 -31.43 9.11 25.60 0.23 -31.19 15 8 H 0.06 3.54 7.74 -2.91 -0.02 3.51 15 9 C 0.04 2.34 4.96 29.85 0.15 2.48 15 10 C -0.05 -2.18 5.31 29.85 0.16 -2.02 15 11 C -0.09 -3.12 5.15 -19.75 -0.10 -3.22 15 12 C -0.06 -1.56 9.70 22.29 0.22 -1.35 15 13 C -0.12 -2.20 9.99 22.06 0.22 -1.98 15 14 C 0.08 1.71 11.20 83.36 0.93 2.65 15 15 N -0.29 -9.67 3.90 -192.96 -0.75 -10.43 15 16 N -0.37 -12.72 12.78 -61.37 -0.78 -13.51 15 17 C 0.23 7.78 12.98 180.83 2.35 10.12 15 18 N -0.59 -24.87 11.25 -198.19 -2.23 -27.10 15 19 C 0.26 10.36 7.60 134.10 1.02 11.38 15 20 H 0.26 15.45 8.31 -92.71 -0.77 14.68 15 21 H -0.02 -1.52 8.14 -2.39 -0.02 -1.54 15 22 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 15 23 H 0.05 2.38 8.13 -2.39 -0.02 2.36 15 24 H 0.09 3.31 8.05 -2.39 -0.02 3.29 15 25 H 0.18 3.41 8.06 -2.91 -0.02 3.39 15 26 H 0.21 1.36 8.06 -2.91 -0.02 1.33 15 27 H 0.20 2.74 8.06 -2.91 -0.02 2.71 15 28 H 0.26 6.11 8.06 -2.91 -0.02 6.09 15 Total: -1.00 -79.14 254.29 5.34 -73.80 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: 1.16 Total: 1.23 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 5.64 Total: -12.69 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -3.48 Total: -109.33 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -79.14 5.34 -73.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231921.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.987 kcal (2) G-P(sol) polarization free energy of solvation -79.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds