Wall clock time and date at job start Mon Mar 30 2020 02:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38071 * 119.21271 * 2 1 4 4 C 1.38899 * 119.03544 * 179.71477 * 3 2 1 5 5 O 1.34614 * 133.92018 * 180.17841 * 4 3 2 6 6 C 1.35218 * 109.92888 * 180.29698 * 5 4 3 7 7 C 1.39729 * 125.52028 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99727 * 179.97438 * 7 6 5 9 9 C 1.40268 * 120.00496 * 359.96489 * 7 6 5 10 10 N 1.30716 * 119.99746 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00372 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46759 * 60.00252 * 11 9 7 13 13 H 1.48498 * 109.47122 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46947 * 300.00365 * 11 9 7 15 15 C 1.39062 * 108.95398 * 359.97438 * 6 5 4 16 16 C 1.41073 * 106.58946 * 0.02562 * 15 6 5 17 17 C 1.39999 * 134.43532 * 179.97438 * 16 15 6 18 18 C 1.50701 * 119.95112 * 0.02562 * 17 16 15 19 19 N 1.31636 * 120.09625 * 179.97438 * 17 16 15 20 20 H 1.09001 * 109.47053 * 269.77787 * 1 2 3 21 21 H 1.09002 * 109.47055 * 29.77691 * 1 2 3 22 22 H 1.09000 * 109.47422 * 149.77312 * 1 2 3 23 23 H 1.08002 * 120.48284 * 359.94165 * 3 2 1 24 24 H 0.96994 * 120.00094 * 179.97438 * 10 9 7 25 25 H 1.07998 * 126.70535 * 180.02562 * 15 6 5 26 26 H 1.08998 * 109.47234 * 90.00164 * 18 17 16 27 27 H 1.09003 * 109.47037 * 210.00221 * 18 17 16 28 28 H 1.09005 * 109.47065 * 329.99479 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1809 1.2051 0.0000 4 6 3.5698 1.2008 0.0060 5 8 4.5066 2.1676 0.0108 6 6 5.7402 1.6140 0.0092 7 6 6.9465 2.3192 0.0135 8 1 7.8848 1.7842 0.0122 9 6 6.9390 3.7218 0.0193 10 7 5.8034 4.3693 0.0213 11 14 8.5516 4.6646 0.0244 12 1 9.3330 4.3151 -1.1891 13 1 8.2724 6.1230 0.0309 14 1 9.3315 4.3049 1.2359 15 6 5.6139 0.2291 0.0038 16 6 4.2309 -0.0491 0.0015 17 6 3.4672 -1.2225 -0.0042 18 6 4.1511 -2.5653 -0.0088 19 7 2.1526 -1.1544 -0.0044 20 1 -0.3633 -0.0040 1.0277 21 1 -0.3633 0.8920 -0.5104 22 1 -0.3634 -0.8879 -0.5173 23 1 1.6359 2.1375 -0.0009 24 1 5.7982 5.3392 0.0257 25 1 6.4175 -0.4924 0.0017 26 1 4.3147 -2.8933 1.0177 27 1 3.5235 -3.2909 -0.5264 28 1 5.1096 -2.4831 -0.5213 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261252343.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:49 Heat of formation + Delta-G solvation = 1.633960 kcal Electronic energy + Delta-G solvation = -13892.873234 eV Core-core repulsion = 11487.932274 eV Total energy + Delta-G solvation = -2404.940960 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.97381 -37.96875 -34.05878 -33.05330 -30.74993 -30.15097 -28.27087 -27.15635 -24.03181 -21.69747 -20.80872 -19.55454 -18.16425 -16.23384 -15.33363 -14.89880 -14.77110 -14.40993 -13.43088 -13.32718 -13.08072 -12.63203 -12.29442 -11.92757 -11.78091 -11.55875 -11.41566 -11.34244 -11.04453 -10.95590 -10.53176 -10.12726 -9.81791 -8.83678 -8.62999 -8.13847 -7.22742 -7.13061 -4.75379 1.90839 2.54324 2.79875 2.84847 2.88515 3.60540 3.60786 4.27692 4.73159 4.94743 5.14709 5.63150 5.85267 5.90486 6.08600 6.11615 6.24105 6.27608 6.34673 6.38674 6.55616 6.64505 6.74517 6.97249 7.09055 7.29997 7.49243 7.61553 7.82185 8.17614 8.29282 8.80022 9.09866 9.74122 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.047632 B = 0.008145 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.699650 B = 3436.995848 C = 4004.247208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.045 3.955 3 C -0.138 4.138 4 C 0.009 3.991 5 O -0.166 6.166 6 C 0.238 3.762 7 C -0.420 4.420 8 H 0.114 0.886 9 C 0.063 3.937 10 N -0.756 5.756 11 Si 0.932 3.068 12 H -0.258 1.258 13 H -0.273 1.273 14 H -0.258 1.258 15 C -0.406 4.406 16 C -0.089 4.089 17 C 0.092 3.908 18 C -0.080 4.080 19 N -0.482 5.482 20 H 0.060 0.940 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.119 0.881 24 H 0.293 0.707 25 H 0.127 0.873 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 -1.690 -0.034 2.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.159 4.159 4 C -0.044 4.044 5 O -0.065 6.065 6 C 0.188 3.812 7 C -0.448 4.448 8 H 0.132 0.868 9 C -0.161 4.161 10 N -0.379 5.379 11 Si 0.754 3.246 12 H -0.182 1.182 13 H -0.197 1.197 14 H -0.182 1.182 15 C -0.428 4.428 16 C -0.092 4.092 17 C -0.051 4.051 18 C -0.137 4.137 19 N -0.195 5.195 20 H 0.079 0.921 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.137 0.863 24 H 0.104 0.896 25 H 0.145 0.855 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.820 -1.881 -0.037 2.618 hybrid contribution 1.178 1.302 0.035 1.756 sum -0.642 -0.580 -0.002 0.865 Atomic orbital electron populations 1.20361 0.89904 1.01848 1.01463 1.20251 0.95541 0.87268 1.05774 1.20369 0.89518 0.98907 1.07075 1.19838 0.91196 0.87626 1.05781 1.84568 1.13764 1.31837 1.76319 1.19670 0.82677 0.89915 0.88945 1.19058 0.91469 0.91000 1.43250 0.86815 1.26350 0.99323 0.98495 0.91977 1.69711 1.27878 1.10929 1.29334 0.85952 0.80104 0.77999 0.80543 1.18212 1.19744 1.18218 1.20876 0.93181 0.94067 1.34683 1.19507 0.95226 0.93507 1.00996 1.20414 0.88332 0.93664 1.02700 1.20369 0.99243 0.92638 1.01497 1.66926 1.09443 1.28831 1.14260 0.92133 0.92037 0.91691 0.86323 0.89581 0.85538 0.92007 0.91969 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.15 36.01 0.37 -0.89 15 2 C 0.05 0.96 6.78 -82.47 -0.56 0.40 15 3 C -0.14 -3.14 9.73 -39.40 -0.38 -3.52 15 4 C 0.01 0.24 7.44 -38.13 -0.28 -0.04 15 5 O -0.17 -4.65 8.88 2.26 0.02 -4.63 15 6 C 0.24 6.44 6.75 -38.72 -0.26 6.18 15 7 C -0.42 -10.52 9.30 -38.26 -0.36 -10.88 15 8 H 0.11 2.58 7.85 -52.48 -0.41 2.17 15 9 C 0.06 1.48 5.50 -17.26 -0.09 1.39 15 10 N -0.76 -18.86 11.96 55.57 0.66 -18.19 15 11 Si 0.93 16.93 29.56 -169.99 -5.03 11.91 15 12 H -0.26 -4.59 7.11 56.52 0.40 -4.19 15 13 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 14 H -0.26 -4.59 7.11 56.52 0.40 -4.19 15 15 C -0.41 -10.37 10.60 -38.20 -0.41 -10.77 15 16 C -0.09 -2.27 6.00 -106.96 -0.64 -2.91 15 17 C 0.09 2.12 6.85 -82.02 -0.56 1.55 15 18 C -0.08 -1.46 10.12 36.01 0.36 -1.10 15 19 N -0.48 -10.86 10.16 -5.32 -0.05 -10.91 15 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.06 0.86 8.07 -51.93 -0.42 0.44 15 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.12 2.41 8.06 -52.49 -0.42 1.98 15 24 H 0.29 6.50 8.29 -40.82 -0.34 6.16 15 25 H 0.13 2.94 8.06 -52.49 -0.42 2.52 15 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 28 H 0.07 1.15 7.89 -51.93 -0.41 0.74 15 LS Contribution 251.88 15.07 3.80 3.80 Total: -1.00 -28.84 251.88 -6.33 -35.17 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -2.91 Total: 3.45 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.82 Total: -20.59 kcal Atomic # 7 Polarization: -29.72 SS G_CDS: 0.61 Total: -29.11 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: 0.02 Total: -4.63 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.91 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.84 -6.33 -35.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261252343.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.800 kcal (2) G-P(sol) polarization free energy of solvation -28.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds