Wall clock time and date at job start Mon Mar 30 2020 02:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38071 * 119.21271 * 2 1 4 4 C 1.38899 * 119.03544 * 179.71477 * 3 2 1 5 5 O 1.34614 * 133.92018 * 180.17841 * 4 3 2 6 6 C 1.35218 * 109.92888 * 180.29698 * 5 4 3 7 7 C 1.39729 * 125.52028 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99727 * 179.97438 * 7 6 5 9 9 C 1.40268 * 120.00496 * 359.96489 * 7 6 5 10 10 N 1.30716 * 119.99746 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00372 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46759 * 60.00252 * 11 9 7 13 13 H 1.48498 * 109.47122 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46947 * 300.00365 * 11 9 7 15 15 C 1.39062 * 108.95398 * 359.97438 * 6 5 4 16 16 C 1.41073 * 106.58946 * 0.02562 * 15 6 5 17 17 C 1.39999 * 134.43532 * 179.97438 * 16 15 6 18 18 C 1.50701 * 119.95112 * 0.02562 * 17 16 15 19 19 N 1.31636 * 120.09625 * 179.97438 * 17 16 15 20 20 H 1.09001 * 109.47053 * 269.77787 * 1 2 3 21 21 H 1.09002 * 109.47055 * 29.77691 * 1 2 3 22 22 H 1.09000 * 109.47422 * 149.77312 * 1 2 3 23 23 H 1.08002 * 120.48284 * 359.94165 * 3 2 1 24 24 H 0.96994 * 120.00094 * 179.97438 * 10 9 7 25 25 H 1.07998 * 126.70535 * 180.02562 * 15 6 5 26 26 H 1.08998 * 109.47234 * 90.00164 * 18 17 16 27 27 H 1.09003 * 109.47037 * 210.00221 * 18 17 16 28 28 H 1.09005 * 109.47065 * 329.99479 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1809 1.2051 0.0000 4 6 3.5698 1.2008 0.0060 5 8 4.5066 2.1676 0.0108 6 6 5.7402 1.6140 0.0092 7 6 6.9465 2.3192 0.0135 8 1 7.8848 1.7842 0.0122 9 6 6.9390 3.7218 0.0193 10 7 5.8034 4.3693 0.0213 11 14 8.5516 4.6646 0.0244 12 1 9.3330 4.3151 -1.1891 13 1 8.2724 6.1230 0.0309 14 1 9.3315 4.3049 1.2359 15 6 5.6139 0.2291 0.0038 16 6 4.2309 -0.0491 0.0015 17 6 3.4672 -1.2225 -0.0042 18 6 4.1511 -2.5653 -0.0088 19 7 2.1526 -1.1544 -0.0044 20 1 -0.3633 -0.0040 1.0277 21 1 -0.3633 0.8920 -0.5104 22 1 -0.3634 -0.8879 -0.5173 23 1 1.6359 2.1375 -0.0009 24 1 5.7982 5.3392 0.0257 25 1 6.4175 -0.4924 0.0017 26 1 4.3147 -2.8933 1.0177 27 1 3.5235 -3.2909 -0.5264 28 1 5.1096 -2.4831 -0.5213 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261252343.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:49 Heat of formation + Delta-G solvation = -15.447611 kcal Electronic energy + Delta-G solvation = -13893.613946 eV Core-core repulsion = 11487.932274 eV Total energy + Delta-G solvation = -2405.681673 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.87030 -39.76188 -35.87249 -34.74180 -32.60804 -31.96337 -29.75652 -28.91956 -25.76044 -23.54515 -22.54787 -21.42969 -20.02011 -18.04858 -17.07881 -16.71630 -16.62783 -16.15191 -15.06059 -14.96928 -14.74527 -14.00039 -13.95263 -13.61455 -13.23267 -13.13740 -13.08510 -12.83427 -12.71908 -12.47409 -12.09084 -11.90569 -11.48701 -10.68461 -10.42368 -10.02491 -8.98482 -8.98317 -6.65002 0.11432 0.67416 1.28325 1.35210 1.52556 1.86579 2.08921 2.41576 2.92647 3.09498 3.55938 3.89806 4.20088 4.30353 4.54629 4.60514 4.80340 4.82571 4.87184 4.89637 4.92347 4.99016 5.07650 5.27338 5.35519 5.46929 5.67675 5.78943 6.02279 6.33457 6.39903 6.86694 7.30795 8.02017 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.047632 B = 0.008145 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.699650 B = 3436.995848 C = 4004.247208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.053 3.947 3 C -0.153 4.153 4 C -0.030 4.030 5 O -0.191 6.191 6 C 0.201 3.799 7 C -0.447 4.447 8 H 0.129 0.871 9 C 0.020 3.980 10 N -0.798 5.798 11 Si 1.014 2.986 12 H -0.249 1.249 13 H -0.264 1.264 14 H -0.249 1.249 15 C -0.422 4.422 16 C -0.117 4.117 17 C 0.092 3.908 18 C -0.077 4.077 19 N -0.490 5.490 20 H 0.080 0.920 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.138 0.862 24 H 0.302 0.698 25 H 0.140 0.860 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 -2.066 -0.005 2.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.080 4.080 3 C -0.173 4.173 4 C -0.083 4.083 5 O -0.091 6.091 6 C 0.151 3.849 7 C -0.473 4.473 8 H 0.147 0.853 9 C -0.200 4.200 10 N -0.422 5.422 11 Si 0.831 3.169 12 H -0.172 1.172 13 H -0.188 1.188 14 H -0.172 1.172 15 C -0.443 4.443 16 C -0.120 4.120 17 C -0.052 4.052 18 C -0.134 4.134 19 N -0.203 5.203 20 H 0.099 0.901 21 H 0.103 0.897 22 H 0.096 0.904 23 H 0.156 0.844 24 H 0.113 0.887 25 H 0.158 0.842 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.998 -2.284 -0.010 3.034 hybrid contribution 1.044 1.327 0.030 1.689 sum -0.953 -0.957 0.020 1.351 Atomic orbital electron populations 1.20506 0.85779 1.03677 1.03289 1.21189 0.98143 0.86325 1.02352 1.20786 0.88493 1.00645 1.07425 1.20505 0.92458 0.87971 1.07359 1.84499 1.14521 1.33058 1.77011 1.20261 0.83135 0.90969 0.90514 1.19572 0.91495 0.92418 1.43854 0.85285 1.27472 1.03358 0.98759 0.90441 1.69788 1.30577 1.11821 1.29976 0.84763 0.74706 0.76430 0.81021 1.17231 1.18827 1.17242 1.21066 0.93874 0.93945 1.35450 1.19812 0.95383 0.94340 1.02471 1.21145 0.88692 0.94802 1.00551 1.20460 0.99437 0.90590 1.02943 1.67149 1.09131 1.29221 1.14794 0.90121 0.89745 0.90385 0.84411 0.88672 0.84227 0.90321 0.89915 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.16 10.15 71.24 0.72 -1.44 15 2 C 0.05 2.17 6.78 42.45 0.29 2.46 15 3 C -0.15 -6.98 9.73 22.39 0.22 -6.76 15 4 C -0.03 -1.61 7.44 23.21 0.17 -1.43 15 5 O -0.19 -11.20 8.88 -14.81 -0.13 -11.34 15 6 C 0.20 11.34 6.75 22.83 0.15 11.49 15 7 C -0.45 -22.97 9.30 23.12 0.22 -22.76 15 8 H 0.13 5.94 7.85 -2.91 -0.02 5.92 15 9 C 0.02 0.95 5.50 85.35 0.47 1.42 15 10 N -0.80 -40.88 11.96 21.89 0.26 -40.62 15 11 Si 1.01 34.17 29.56 68.60 2.03 36.20 15 12 H -0.25 -7.96 7.11 99.48 0.71 -7.25 15 13 H -0.26 -8.43 7.11 99.48 0.71 -7.73 15 14 H -0.25 -7.96 7.11 99.48 0.71 -7.26 15 15 C -0.42 -22.23 10.60 23.16 0.25 -21.99 15 16 C -0.12 -6.07 6.00 -21.38 -0.13 -6.20 15 17 C 0.09 4.14 6.85 43.02 0.29 4.43 15 18 C -0.08 -2.68 10.12 71.24 0.72 -1.96 15 19 N -0.49 -21.32 10.16 -170.73 -1.74 -23.05 15 20 H 0.08 2.05 8.14 -2.39 -0.02 2.03 15 21 H 0.08 2.06 8.07 -2.39 -0.02 2.04 15 22 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.14 5.55 8.06 -2.91 -0.02 5.53 15 24 H 0.30 13.65 8.29 -92.71 -0.77 12.88 15 25 H 0.14 6.66 8.06 -2.91 -0.02 6.63 15 26 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 27 H 0.08 2.53 8.14 -2.39 -0.02 2.51 15 28 H 0.07 2.40 7.89 -2.38 -0.02 2.38 15 Total: -1.00 -64.31 251.88 4.96 -59.35 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 1.17 Total: 22.20 kcal Atomic # 6 Polarization: -46.11 SS G_CDS: 3.37 Total: -42.74 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: -1.47 Total: -63.67 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.13 Total: -11.34 kcal Atomic # 14 Polarization: 34.17 SS G_CDS: 2.03 Total: 36.20 kcal Total: -64.31 4.96 -59.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261252343.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.900 kcal (2) G-P(sol) polarization free energy of solvation -64.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds