Wall clock time and date at job start Mon Mar 30 2020 02:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46964 * 2 1 4 4 C 1.50700 * 109.47035 * 119.99145 * 2 1 3 5 5 H 1.08008 * 119.99547 * 94.50761 * 4 2 1 6 6 C 1.37879 * 120.00423 * 274.50711 * 4 2 1 7 7 N 1.31508 * 119.99873 * 6.53829 * 6 4 2 8 8 Si 1.86801 * 120.00012 * 186.53799 * 6 4 2 9 9 H 1.48501 * 109.47155 * 179.97438 * 8 6 4 10 10 H 1.48506 * 109.47128 * 300.00001 * 8 6 4 11 11 H 1.48504 * 109.47142 * 60.00029 * 8 6 4 12 12 C 1.50692 * 109.47503 * 239.99872 * 2 1 3 13 13 N 1.29745 * 126.28956 * 300.01969 * 12 2 1 14 14 O 1.41361 * 109.74151 * 179.97438 * 13 12 2 15 15 C 1.34816 * 109.32902 * 0.02562 * 14 13 12 16 16 C 1.38984 * 133.45355 * 180.02562 * 15 14 13 17 17 C 1.37799 * 119.79506 * 179.97438 * 16 15 14 18 18 C 1.38784 * 120.60350 * 0.02647 * 17 16 15 19 19 C 1.36619 * 120.51325 * 359.97126 * 18 17 16 20 20 C 1.39685 * 119.79314 * 359.73899 * 19 18 17 21 21 H 1.09000 * 109.47039 * 175.39262 * 1 2 3 22 22 H 1.08991 * 109.47102 * 295.39658 * 1 2 3 23 23 H 1.09002 * 109.46619 * 55.39647 * 1 2 3 24 24 H 0.96996 * 119.99992 * 355.09281 * 7 6 4 25 25 H 1.07998 * 120.10236 * 359.97438 * 16 15 14 26 26 H 1.08002 * 119.69790 * 179.97438 * 17 16 15 27 27 H 1.08001 * 119.74530 * 179.97438 * 18 17 16 28 28 H 1.08005 * 120.10607 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.2816 -1.7601 1.1841 6 6 2.1737 -0.0199 2.4157 7 7 1.7507 1.2219 2.5077 8 14 2.9660 -0.8484 3.8905 9 1 2.9994 0.1002 5.0325 10 1 2.1773 -2.0492 4.2667 11 1 4.3519 -1.2549 3.5446 12 6 2.0324 -0.7104 -1.2303 13 7 1.7952 -1.9438 -1.5556 14 8 2.4364 -2.2469 -2.7784 15 6 3.0935 -1.1558 -3.2202 16 6 3.8715 -0.8977 -4.3426 17 6 4.4230 0.3525 -4.5207 18 6 4.2095 1.3582 -3.5886 19 6 3.4479 1.1250 -2.4786 20 6 2.8746 -0.1335 -2.2822 21 1 -0.3633 -1.0243 -0.0825 22 1 -0.3633 0.4407 0.9283 23 1 -0.3632 0.5836 -0.8459 24 1 1.4046 1.6758 1.7235 25 1 4.0432 -1.6746 -5.0729 26 1 5.0277 0.5512 -5.3933 27 1 4.6488 2.3329 -3.7418 28 1 3.2856 1.9126 -1.7576 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254475.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:59 Heat of formation + Delta-G solvation = 26.977112 kcal Electronic energy + Delta-G solvation = -13957.857134 eV Core-core repulsion = 11554.015135 eV Total energy + Delta-G solvation = -2403.841999 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.71071 -38.66518 -37.34821 -34.55178 -32.02599 -31.21199 -31.00918 -27.09143 -24.96842 -23.92722 -23.56260 -21.18890 -19.11517 -18.35493 -17.80655 -16.95882 -16.44554 -15.84139 -15.70943 -15.14172 -14.71336 -14.62215 -13.81215 -13.44968 -13.24955 -13.12798 -12.95191 -12.63880 -12.35248 -12.19519 -12.00720 -11.90895 -11.78163 -10.79848 -10.52001 -9.93769 -9.58828 -8.72605 -6.45179 -0.31570 0.29222 1.14524 1.52256 1.57479 1.67676 1.79228 2.50307 2.64739 3.07863 3.23719 3.38477 3.63458 4.07062 4.23606 4.31198 4.37506 4.46750 4.62202 4.68163 4.88363 4.91880 5.07012 5.17533 5.28799 5.38680 5.40647 5.75772 5.83807 6.06382 6.36635 6.50991 7.29984 8.68090 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.036014 B = 0.008611 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.282753 B = 3250.780373 C = 3391.147540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.087 3.913 3 H 0.049 0.951 4 C -0.607 4.607 5 H 0.036 0.964 6 C -0.013 4.013 7 N -0.920 5.920 8 Si 1.111 2.889 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.160 3.840 13 N -0.334 5.334 14 O -0.128 6.128 15 C 0.051 3.949 16 C -0.134 4.134 17 C -0.047 4.047 18 C -0.142 4.142 19 C -0.053 4.053 20 C -0.222 4.222 21 H 0.038 0.962 22 H 0.050 0.950 23 H 0.046 0.954 24 H 0.264 0.736 25 H 0.163 0.837 26 H 0.189 0.811 27 H 0.172 0.828 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.131 2.204 -12.943 14.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.067 3.933 3 H 0.067 0.933 4 C -0.645 4.645 5 H 0.054 0.946 6 C -0.213 4.213 7 N -0.556 5.556 8 Si 0.933 3.067 9 H -0.199 1.199 10 H -0.201 1.201 11 H -0.201 1.201 12 C -0.020 4.020 13 N -0.081 5.081 14 O -0.136 6.136 15 C -0.003 4.003 16 C -0.153 4.153 17 C -0.065 4.065 18 C -0.160 4.160 19 C -0.073 4.073 20 C -0.226 4.226 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.180 0.820 26 H 0.206 0.794 27 H 0.189 0.811 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.921 1.204 -11.138 12.671 hybrid contribution -0.489 0.153 -1.415 1.505 sum 5.432 1.358 -12.553 13.745 Atomic orbital electron populations 1.21768 0.96055 1.00126 1.00163 1.17722 0.93680 0.94979 0.86922 0.93251 1.21984 1.49214 0.97075 0.96262 0.94580 1.27104 0.94542 0.96107 1.03563 1.70920 1.39393 1.12881 1.32365 0.82992 0.76129 0.74877 0.72721 1.19891 1.20119 1.20122 1.25377 0.90521 0.91180 0.94880 1.79806 1.17228 1.16239 0.94810 1.89013 1.58795 1.32351 1.33442 1.21015 0.95704 0.86619 0.96945 1.20541 0.99303 1.00467 0.95002 1.21703 0.95458 0.89945 0.99429 1.21271 0.99397 1.02024 0.93286 1.20787 0.94431 0.93587 0.98499 1.21166 1.06710 0.98849 0.95841 0.94328 0.93141 0.93485 0.92479 0.81956 0.79391 0.81067 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 9.04 71.98 0.65 -5.16 15 2 C 0.09 4.46 2.37 -12.29 -0.03 4.43 15 3 H 0.05 2.55 6.95 -2.38 -0.02 2.54 15 4 C -0.61 -34.70 8.29 25.60 0.21 -34.49 15 5 H 0.04 2.17 7.82 -2.91 -0.02 2.14 15 6 C -0.01 -0.71 5.45 84.66 0.46 -0.25 15 7 N -0.92 -53.13 13.63 21.45 0.29 -52.84 15 8 Si 1.11 50.07 29.91 68.60 2.05 52.12 15 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 15 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 15 12 C 0.16 7.78 5.95 45.04 0.27 8.05 15 13 N -0.33 -16.77 12.81 -43.48 -0.56 -17.33 15 14 O -0.13 -5.75 12.06 29.91 0.36 -5.38 15 15 C 0.05 1.91 7.48 22.99 0.17 2.08 15 16 C -0.13 -3.42 10.07 22.34 0.23 -3.19 15 17 C -0.05 -0.88 10.02 22.30 0.22 -0.65 15 18 C -0.14 -3.09 9.97 22.02 0.22 -2.87 15 19 C -0.05 -1.70 10.05 22.24 0.22 -1.47 15 20 C -0.22 -9.05 6.32 -20.21 -0.13 -9.17 15 21 H 0.04 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.05 2.46 7.83 -2.39 -0.02 2.44 15 23 H 0.05 1.94 8.14 -2.39 -0.02 1.92 15 24 H 0.26 15.09 6.38 -92.71 -0.59 14.50 15 25 H 0.16 3.09 8.06 -2.91 -0.02 3.07 15 26 H 0.19 1.59 8.06 -2.91 -0.02 1.57 15 27 H 0.17 2.34 8.06 -2.91 -0.02 2.31 15 28 H 0.13 4.10 8.06 -2.91 -0.02 4.07 15 Total: -1.00 -69.34 252.25 5.99 -63.36 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 1.34 Total: 2.77 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 2.50 Total: -42.70 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -0.26 Total: -70.17 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: 0.36 Total: -5.38 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.12 kcal Total: -69.34 5.99 -63.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254475.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.333 kcal (2) G-P(sol) polarization free energy of solvation -69.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds