Wall clock time and date at job start Mon Mar 30 2020 02:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46617 * 2 1 4 4 C 1.50701 * 109.46943 * 119.99958 * 2 1 3 5 5 H 1.07994 * 120.00048 * 120.00390 * 4 2 1 6 6 C 1.37878 * 120.00098 * 300.00018 * 4 2 1 7 7 N 1.31517 * 120.00026 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00305 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46833 * 89.99921 * 8 6 4 10 10 H 1.48493 * 109.47216 * 210.00402 * 8 6 4 11 11 H 1.48505 * 109.46760 * 330.00432 * 8 6 4 12 12 C 1.50701 * 109.47395 * 239.99996 * 2 1 3 13 13 C 1.38784 * 119.69755 * 299.97791 * 12 2 1 14 14 C 1.36620 * 120.51243 * 179.97438 * 13 12 2 15 15 C 1.39686 * 119.79161 * 0.02562 * 14 13 12 16 16 C 1.46571 * 133.73569 * 179.97438 * 15 14 13 17 17 N 1.29750 * 107.41476 * 180.02562 * 16 15 14 18 18 O 1.41354 * 109.73689 * 0.02562 * 17 16 15 19 19 C 1.34824 * 109.33706 * 359.77827 * 18 17 16 20 20 C 1.37800 * 119.69883 * 119.99946 * 12 2 1 21 21 H 1.08995 * 109.46805 * 60.00341 * 1 2 3 22 22 H 1.08999 * 109.46617 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46903 * 300.00105 * 1 2 3 24 24 H 0.96999 * 120.00412 * 179.97438 * 7 6 4 25 25 H 1.08004 * 119.74445 * 0.02562 * 13 12 2 26 26 H 1.08002 * 120.10850 * 179.97438 * 14 13 12 27 27 H 1.07998 * 126.29394 * 359.97438 * 16 15 14 28 28 H 1.08002 * 120.10029 * 359.97375 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.6305 -0.5439 4.4119 10 1 1.3444 -0.9490 5.1122 11 1 2.4881 -2.5653 3.7122 12 6 2.0325 -0.7104 -1.2304 13 6 1.6938 -2.0393 -1.4436 14 6 2.1396 -2.6993 -2.5536 15 6 2.9431 -2.0325 -3.4816 16 6 3.5758 -2.4279 -4.7432 17 7 4.2181 -1.3954 -5.1958 18 8 4.0595 -0.3074 -4.3074 19 6 3.2852 -0.6867 -3.2709 20 6 2.8243 -0.0347 -2.1334 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.7081 1.1609 3.4844 25 1 1.0723 -2.5555 -0.7268 26 1 1.8724 -3.7336 -2.7128 27 1 3.5187 -3.4002 -5.2098 28 1 3.0829 0.9994 -1.9595 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261260570.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:23 Heat of formation + Delta-G solvation = 36.179592 kcal Electronic energy + Delta-G solvation = -13804.597249 eV Core-core repulsion = 11401.154300 eV Total energy + Delta-G solvation = -2403.442949 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.61958 -39.28184 -35.96132 -34.65850 -33.01911 -31.31631 -29.68441 -27.21272 -24.60898 -23.92538 -22.84528 -21.67358 -18.64073 -18.17119 -17.57613 -16.87805 -16.74121 -16.15209 -15.21113 -14.82052 -14.48534 -14.30706 -13.80216 -13.49924 -13.18638 -12.83296 -12.58525 -12.45931 -12.33150 -12.27227 -12.16453 -12.01609 -11.42374 -11.03392 -10.47481 -9.59053 -9.49405 -8.10405 -6.24755 -0.24015 0.40840 1.20967 1.44315 1.46165 1.50598 1.55637 2.43572 2.76788 3.18548 3.36562 3.43042 3.71545 4.16868 4.33199 4.48952 4.52382 4.80479 4.92096 4.98495 5.10471 5.19497 5.22529 5.38248 5.48454 5.65638 5.80468 5.98295 6.05674 6.24107 6.31875 6.83300 7.43641 8.94473 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.048583 B = 0.007288 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.199293 B = 3840.890401 C = 3937.628004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.066 3.934 3 H 0.006 0.994 4 C -0.522 4.522 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.955 3.045 9 H -0.281 1.281 10 H -0.283 1.283 11 H -0.264 1.264 12 C 0.014 3.986 13 C -0.148 4.148 14 C -0.022 4.022 15 C -0.232 4.232 16 C 0.144 3.856 17 N -0.329 5.329 18 O -0.138 6.138 19 C 0.067 3.933 20 C -0.163 4.163 21 H 0.024 0.976 22 H 0.043 0.957 23 H 0.062 0.938 24 H 0.262 0.738 25 H 0.139 0.861 26 H 0.177 0.823 27 H 0.265 0.735 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.829 -9.151 -9.458 13.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.048 3.952 3 H 0.025 0.975 4 C -0.560 4.560 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.781 3.219 9 H -0.207 1.207 10 H -0.209 1.209 11 H -0.188 1.188 12 C 0.013 3.987 13 C -0.166 4.166 14 C -0.041 4.041 15 C -0.236 4.236 16 C -0.056 4.056 17 N -0.076 5.076 18 O -0.144 6.144 19 C 0.014 3.986 20 C -0.183 4.183 21 H 0.043 0.957 22 H 0.062 0.938 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.157 0.843 26 H 0.194 0.806 27 H 0.280 0.720 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.543 -8.398 -10.260 13.348 hybrid contribution -0.105 0.055 1.636 1.641 sum 1.438 -8.343 -8.623 12.085 Atomic orbital electron populations 1.21634 0.96400 1.00039 0.99944 1.17879 0.93841 0.94214 0.89290 0.97537 1.21315 1.31405 1.12612 0.90625 0.92391 1.25695 0.95129 0.95635 1.01783 1.70007 1.37358 1.24007 1.24160 0.85593 0.77834 0.79395 0.79084 1.20740 1.20896 1.18775 1.20485 0.90316 0.94698 0.93220 1.20899 1.02959 0.93970 0.98809 1.20778 0.92088 1.00977 0.90275 1.21096 1.09282 0.93491 0.99706 1.26832 0.88303 0.99869 0.90575 1.79745 1.21901 0.95321 1.10681 1.89055 1.61515 1.34097 1.29746 1.20408 0.92916 0.95118 0.90196 1.19955 1.04275 1.01144 0.92888 0.95651 0.93825 0.91949 0.92841 0.84326 0.80559 0.71993 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.78 71.99 0.63 -4.99 15 2 C 0.07 3.22 2.47 -12.28 -0.03 3.19 15 3 H 0.01 0.35 7.85 -2.39 -0.02 0.33 15 4 C -0.52 -27.22 8.23 25.60 0.21 -27.01 15 5 H 0.06 2.97 7.59 -2.91 -0.02 2.95 15 6 C 0.02 0.88 5.30 84.65 0.45 1.33 15 7 N -0.92 -51.02 11.32 21.45 0.24 -50.77 15 8 Si 0.96 41.89 29.54 68.60 2.03 43.92 15 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 10 H -0.28 -12.22 7.11 99.48 0.71 -11.52 15 11 H -0.26 -11.05 7.11 99.48 0.71 -10.34 15 12 C 0.01 0.59 4.74 -19.84 -0.09 0.49 15 13 C -0.15 -5.07 8.62 22.02 0.19 -4.88 15 14 C -0.02 -0.58 10.05 22.24 0.22 -0.35 15 15 C -0.23 -6.75 6.35 -20.21 -0.13 -6.88 15 16 C 0.14 3.21 12.32 87.18 1.07 4.29 15 17 N -0.33 -10.05 12.81 -52.86 -0.68 -10.73 15 18 O -0.14 -5.18 12.06 29.84 0.36 -4.82 15 19 C 0.07 2.45 7.48 22.99 0.17 2.63 15 20 C -0.16 -6.53 9.68 22.34 0.22 -6.31 15 21 H 0.02 1.04 8.14 -2.39 -0.02 1.02 15 22 H 0.04 1.84 7.36 -2.39 -0.02 1.82 15 23 H 0.06 3.20 6.07 -2.39 -0.01 3.18 15 24 H 0.26 13.93 8.31 -92.71 -0.77 13.16 15 25 H 0.14 4.62 7.54 -2.91 -0.02 4.60 15 26 H 0.18 2.88 8.06 -2.91 -0.02 2.85 15 27 H 0.26 2.31 8.06 -2.91 -0.02 2.29 15 28 H 0.12 4.88 7.93 -2.91 -0.02 4.86 15 Total: -1.00 -63.33 247.99 6.03 -57.30 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 1.17 Total: 3.60 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 2.91 Total: -38.49 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.43 Total: -61.50 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: 0.36 Total: -4.82 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -63.33 6.03 -57.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261260570.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.480 kcal (2) G-P(sol) polarization free energy of solvation -63.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds