Wall clock time and date at job start Mon Mar 30 2020 03:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00157 * 2 1 4 4 H 1.48498 * 109.47200 * 269.99956 * 3 2 1 5 5 H 1.48500 * 109.46746 * 30.00174 * 3 2 1 6 6 H 1.48504 * 109.47355 * 149.99806 * 3 2 1 7 7 C 1.37885 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99750 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.47588 * 300.00065 * 9 7 2 11 11 N 1.46898 * 109.47441 * 60.00120 * 9 7 2 12 12 C 1.50697 * 109.47321 * 180.02562 * 9 7 2 13 13 N 1.30251 * 126.10686 * 284.97778 * 12 9 7 14 14 N 1.39870 * 110.08642 * 179.97438 * 13 12 9 15 15 H 0.96996 * 125.46228 * 179.97438 * 14 13 12 16 16 C 1.37040 * 109.07702 * 0.02562 * 14 13 12 17 17 C 1.39288 * 133.84795 * 180.02562 * 16 14 13 18 18 C 1.36589 * 119.85194 * 179.97438 * 17 16 14 19 19 C 1.38963 * 120.81555 * 0.02562 * 18 17 16 20 20 C 1.36465 * 120.62745 * 0.02562 * 19 18 17 21 21 C 1.39943 * 119.63701 * 359.97438 * 20 19 18 22 22 H 0.97001 * 120.00253 * 0.02562 * 1 2 3 23 23 H 1.00899 * 110.99827 * 59.99573 * 11 9 7 24 24 H 1.00896 * 111.00440 * 183.95476 * 11 9 7 25 25 H 1.07998 * 120.07575 * 0.02562 * 17 16 14 26 26 H 1.08003 * 119.59357 * 179.97438 * 18 17 16 27 27 H 1.07998 * 119.69082 * 179.97438 * 19 18 17 28 28 H 1.08003 * 120.17937 * 179.70515 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 1 0.6240 -2.5575 0.8880 11 7 0.4070 -2.5762 -1.2015 12 6 2.2303 -3.6446 -0.0015 13 7 2.9366 -4.0508 -1.0177 14 7 3.7345 -5.1373 -0.6445 15 1 4.3466 -5.6126 -1.2278 16 6 3.5120 -5.4234 0.6771 17 6 4.0184 -6.3777 1.5564 18 6 3.5855 -6.4064 2.8515 19 6 2.6422 -5.4934 3.3073 20 6 2.1277 -4.5480 2.4684 21 6 2.5553 -4.4981 1.1368 22 1 -0.4850 0.8400 -0.0004 23 1 0.9654 -2.5242 -2.0403 24 1 -0.1569 -3.4128 -1.1938 25 1 4.7522 -7.0927 1.2150 26 1 3.9807 -7.1484 3.5296 27 1 2.3125 -5.5329 4.3349 28 1 1.3914 -3.8450 2.8290 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261263098.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:55 Heat of formation + Delta-G solvation = 82.972812 kcal Electronic energy + Delta-G solvation = -13905.473671 eV Core-core repulsion = 11536.352580 eV Total energy + Delta-G solvation = -2369.121092 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.69835 -36.79081 -34.63974 -31.94398 -30.85253 -29.27726 -28.77552 -26.09019 -23.00137 -22.46273 -21.62757 -18.90639 -17.41692 -16.57572 -16.11255 -14.91989 -14.60166 -14.23563 -14.07350 -13.76281 -13.53094 -12.84109 -12.39656 -11.65553 -11.52134 -11.33022 -10.86288 -10.81472 -10.67680 -10.14501 -10.01924 -9.64298 -9.02409 -8.42257 -8.22980 -7.54209 -7.14635 -5.88448 -4.02537 1.37634 1.88405 3.15482 3.25397 3.36536 3.42790 3.47228 4.18867 4.50830 4.98002 5.17060 5.27751 5.30553 5.44097 5.61929 5.73986 6.09987 6.25154 6.32225 6.36703 6.67566 6.86048 7.07646 7.22851 7.33470 7.78605 7.91498 8.12137 8.30219 8.63402 9.00961 9.11585 9.65272 11.16242 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.037376 B = 0.008495 C = 0.008074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.958035 B = 3295.260211 C = 3467.178881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.085 3.915 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.295 3.705 10 H 0.060 0.940 11 N -0.803 5.803 12 C 0.114 3.886 13 N -0.266 5.266 14 N -0.528 5.528 15 H 0.430 0.570 16 C 0.123 3.877 17 C -0.156 4.156 18 C -0.076 4.076 19 C -0.177 4.177 20 C -0.025 4.025 21 C -0.171 4.171 22 H 0.257 0.743 23 H 0.326 0.674 24 H 0.298 0.702 25 H 0.117 0.883 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.100 -11.137 4.033 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.122 4.122 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.182 3.818 10 H 0.078 0.922 11 N -0.328 5.328 12 C -0.067 4.067 13 N -0.079 5.079 14 N -0.240 5.240 15 H 0.273 0.727 16 C 0.006 3.994 17 C -0.178 4.178 18 C -0.097 4.097 19 C -0.197 4.197 20 C -0.045 4.045 21 C -0.180 4.180 22 H 0.067 0.933 23 H 0.138 0.862 24 H 0.108 0.892 25 H 0.135 0.865 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.850 -10.143 3.018 11.641 hybrid contribution 1.416 -0.478 0.248 1.515 sum 6.267 -10.620 3.266 12.756 Atomic orbital electron populations 1.70090 1.05617 1.25890 1.46509 1.24898 0.94673 0.98521 0.94071 0.86690 0.79934 0.83725 0.78109 1.20673 1.21188 1.20054 1.20726 0.92263 0.89085 1.54655 0.92840 1.17918 0.85772 0.86335 0.91752 0.92218 1.59206 1.27555 1.41562 1.04487 1.26248 0.96305 0.96378 0.87754 1.76625 1.06931 1.00455 1.23905 1.46068 1.40530 1.30026 1.07353 0.72733 1.18931 0.97150 0.96878 0.86460 1.19693 1.04481 1.00239 0.93381 1.20592 0.96413 0.98140 0.94522 1.20569 1.01069 0.98116 0.99952 1.20502 0.96967 0.96211 0.90833 1.20113 1.02510 0.99361 0.96016 0.93303 0.86162 0.89160 0.86536 0.86096 0.86105 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.29 12.77 55.43 0.71 -23.58 15 2 C 0.09 2.38 5.39 -17.82 -0.10 2.28 15 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 15 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 7 C -0.53 -14.66 8.71 -34.44 -0.30 -14.96 15 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 15 9 C 0.29 7.37 3.12 -70.02 -0.22 7.16 15 10 H 0.06 1.57 8.14 -51.93 -0.42 1.15 15 11 N -0.80 -19.31 8.53 -6.65 -0.06 -19.36 15 12 C 0.11 2.58 6.19 -80.19 -0.50 2.08 15 13 N -0.27 -5.74 12.41 34.84 0.43 -5.31 15 14 N -0.53 -9.36 7.37 32.36 0.24 -9.12 15 15 H 0.43 5.94 8.96 -182.78 -1.64 4.30 15 16 C 0.12 2.18 7.34 -84.18 -0.62 1.56 15 17 C -0.16 -2.22 10.03 -39.79 -0.40 -2.62 15 18 C -0.08 -1.00 9.96 -39.91 -0.40 -1.39 15 19 C -0.18 -2.52 9.97 -39.95 -0.40 -2.92 15 20 C -0.02 -0.43 10.07 -39.58 -0.40 -0.83 15 21 C -0.17 -3.43 6.33 -105.21 -0.67 -4.10 15 22 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 23 H 0.33 7.81 8.86 -39.29 -0.35 7.46 15 24 H 0.30 6.44 9.06 -39.29 -0.36 6.08 15 25 H 0.12 1.32 8.06 -52.49 -0.42 0.90 15 26 H 0.12 1.18 8.06 -52.48 -0.42 0.75 15 27 H 0.12 1.38 8.06 -52.49 -0.42 0.96 15 28 H 0.13 2.17 8.06 -52.48 -0.42 1.75 15 LS Contribution 252.35 15.07 3.80 3.80 Total: -1.00 -30.84 252.35 -7.88 -38.72 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -4.00 Total: 12.16 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -3.99 Total: -13.74 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 1.32 Total: -57.37 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.84 -7.88 -38.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263098.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.693 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds