Wall clock time and date at job start Mon Mar 30 2020 03:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00157 * 2 1 4 4 H 1.48498 * 109.47200 * 269.99956 * 3 2 1 5 5 H 1.48500 * 109.46746 * 30.00174 * 3 2 1 6 6 H 1.48504 * 109.47355 * 149.99806 * 3 2 1 7 7 C 1.37885 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99750 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.47588 * 300.00065 * 9 7 2 11 11 N 1.46898 * 109.47441 * 60.00120 * 9 7 2 12 12 C 1.50697 * 109.47321 * 180.02562 * 9 7 2 13 13 N 1.30251 * 126.10686 * 284.97778 * 12 9 7 14 14 N 1.39870 * 110.08642 * 179.97438 * 13 12 9 15 15 H 0.96996 * 125.46228 * 179.97438 * 14 13 12 16 16 C 1.37040 * 109.07702 * 0.02562 * 14 13 12 17 17 C 1.39288 * 133.84795 * 180.02562 * 16 14 13 18 18 C 1.36589 * 119.85194 * 179.97438 * 17 16 14 19 19 C 1.38963 * 120.81555 * 0.02562 * 18 17 16 20 20 C 1.36465 * 120.62745 * 0.02562 * 19 18 17 21 21 C 1.39943 * 119.63701 * 359.97438 * 20 19 18 22 22 H 0.97001 * 120.00253 * 0.02562 * 1 2 3 23 23 H 1.00899 * 110.99827 * 59.99573 * 11 9 7 24 24 H 1.00896 * 111.00440 * 183.95476 * 11 9 7 25 25 H 1.07998 * 120.07575 * 0.02562 * 17 16 14 26 26 H 1.08003 * 119.59357 * 179.97438 * 18 17 16 27 27 H 1.07998 * 119.69082 * 179.97438 * 19 18 17 28 28 H 1.08003 * 120.17937 * 179.70515 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 1 0.6240 -2.5575 0.8880 11 7 0.4070 -2.5762 -1.2015 12 6 2.2303 -3.6446 -0.0015 13 7 2.9366 -4.0508 -1.0177 14 7 3.7345 -5.1373 -0.6445 15 1 4.3466 -5.6126 -1.2278 16 6 3.5120 -5.4234 0.6771 17 6 4.0184 -6.3777 1.5564 18 6 3.5855 -6.4064 2.8515 19 6 2.6422 -5.4934 3.3073 20 6 2.1277 -4.5480 2.4684 21 6 2.5553 -4.4981 1.1368 22 1 -0.4850 0.8400 -0.0004 23 1 0.9654 -2.5242 -2.0403 24 1 -0.1569 -3.4128 -1.1938 25 1 4.7522 -7.0927 1.2150 26 1 3.9807 -7.1484 3.5296 27 1 2.3125 -5.5329 4.3349 28 1 1.3914 -3.8450 2.8290 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261263098.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:55 Heat of formation + Delta-G solvation = 60.352083 kcal Electronic energy + Delta-G solvation = -13906.454580 eV Core-core repulsion = 11536.352580 eV Total energy + Delta-G solvation = -2370.102000 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.09465 -38.08668 -36.50064 -33.81792 -32.44882 -30.62472 -30.15923 -28.13768 -24.82543 -23.78043 -22.92231 -20.56560 -18.77605 -18.53560 -17.55612 -16.61169 -16.09336 -15.95906 -15.68201 -15.25510 -14.77126 -14.44789 -14.32601 -13.34268 -12.88625 -12.77273 -12.74469 -12.63147 -12.07276 -11.86931 -11.67908 -11.43827 -10.78797 -10.55650 -9.56472 -9.11472 -8.79383 -8.00619 -6.21879 0.09343 0.64792 1.43408 1.43738 1.53179 1.64326 1.91941 2.47662 2.94044 3.22949 3.74987 3.78662 3.96616 4.21801 4.41078 4.47735 4.57119 4.77466 5.02724 5.08910 5.34111 5.48309 5.62117 5.68093 5.72434 6.03256 6.10596 6.50785 6.58593 6.80937 7.00394 7.17958 7.49179 9.03295 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.037376 B = 0.008495 C = 0.008074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.958035 B = 3295.260211 C = 3467.178881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.042 3.958 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.036 0.964 9 C 0.301 3.699 10 H 0.036 0.964 11 N -0.810 5.810 12 C 0.086 3.914 13 N -0.287 5.287 14 N -0.516 5.516 15 H 0.446 0.554 16 C 0.111 3.889 17 C -0.150 4.150 18 C -0.064 4.064 19 C -0.162 4.162 20 C -0.056 4.056 21 C -0.208 4.208 22 H 0.259 0.741 23 H 0.325 0.675 24 H 0.311 0.689 25 H 0.154 0.846 26 H 0.170 0.830 27 H 0.154 0.846 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.701 -12.795 5.318 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.163 4.163 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.582 4.582 8 H 0.054 0.946 9 C 0.189 3.811 10 H 0.053 0.947 11 N -0.335 5.335 12 C -0.094 4.094 13 N -0.102 5.102 14 N -0.232 5.232 15 H 0.292 0.708 16 C -0.005 4.005 17 C -0.172 4.172 18 C -0.085 4.085 19 C -0.181 4.181 20 C -0.077 4.077 21 C -0.216 4.216 22 H 0.068 0.932 23 H 0.137 0.863 24 H 0.121 0.879 25 H 0.172 0.828 26 H 0.187 0.813 27 H 0.171 0.829 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.458 -11.816 4.307 14.138 hybrid contribution 0.970 -0.116 -0.069 0.979 sum 7.428 -11.932 4.238 14.680 Atomic orbital electron populations 1.70193 1.06795 1.26728 1.47230 1.25590 0.95500 1.01541 0.93672 0.85711 0.78673 0.79919 0.78091 1.20408 1.20127 1.20025 1.20907 0.91605 0.90892 1.54832 0.94578 1.17463 0.86012 0.86742 0.90905 0.94670 1.59070 1.27816 1.42502 1.04134 1.25690 0.97092 0.96915 0.89704 1.76436 1.07521 1.01904 1.24294 1.45940 1.40130 1.29084 1.08029 0.70806 1.19315 0.97183 0.97542 0.86488 1.20214 1.04361 0.99417 0.93173 1.21177 0.94739 0.97903 0.94652 1.21016 0.99862 0.96392 1.00824 1.20638 0.98286 0.98008 0.90724 1.20307 1.04435 1.00261 0.96639 0.93165 0.86312 0.87862 0.82795 0.81300 0.82860 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.28 12.77 21.45 0.27 -51.00 15 2 C 0.04 2.36 5.39 84.66 0.46 2.81 15 3 Si 0.95 44.78 29.54 68.60 2.03 46.80 15 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 15 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 7 C -0.54 -31.28 8.71 25.60 0.22 -31.06 15 8 H 0.04 2.15 7.74 -2.91 -0.02 2.13 15 9 C 0.30 15.82 3.12 43.42 0.14 15.96 15 10 H 0.04 1.99 8.14 -2.38 -0.02 1.97 15 11 N -0.81 -40.53 8.53 -174.97 -1.49 -42.03 15 12 C 0.09 4.03 6.19 44.79 0.28 4.31 15 13 N -0.29 -12.66 12.41 -43.69 -0.54 -13.20 15 14 N -0.52 -17.94 7.37 -51.54 -0.38 -18.32 15 15 H 0.45 11.71 8.96 -213.47 -1.91 9.80 15 16 C 0.11 3.79 7.34 39.21 0.29 4.07 15 17 C -0.15 -3.67 10.03 22.14 0.22 -3.45 15 18 C -0.06 -1.37 9.96 22.06 0.22 -1.15 15 19 C -0.16 -4.09 9.97 22.03 0.22 -3.87 15 20 C -0.06 -1.94 10.07 22.27 0.22 -1.72 15 21 C -0.21 -8.43 6.33 -20.24 -0.13 -8.56 15 22 H 0.26 14.41 8.31 -92.71 -0.77 13.64 15 23 H 0.33 16.18 8.86 -89.69 -0.79 15.39 15 24 H 0.31 13.99 9.06 -89.70 -0.81 13.18 15 25 H 0.15 2.62 8.06 -2.91 -0.02 2.60 15 26 H 0.17 2.06 8.06 -2.91 -0.02 2.04 15 27 H 0.15 2.84 8.06 -2.91 -0.02 2.82 15 28 H 0.12 4.20 8.06 -2.91 -0.02 4.18 15 Total: -1.00 -68.51 252.35 -0.28 -68.79 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -2.31 Total: 31.61 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 2.14 Total: -22.65 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -2.14 Total: -124.55 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.51 -0.28 -68.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263098.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.141 kcal (2) G-P(sol) polarization free energy of solvation -68.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds