Wall clock time and date at job start Mon Mar 30 2020 02:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47578 * 2 1 4 4 O 1.33893 * 126.86411 * 270.00577 * 3 2 1 5 5 N 1.21076 * 113.63263 * 179.97438 * 4 3 2 6 6 C 1.31635 * 111.88657 * 359.97438 * 5 4 3 7 7 C 1.40370 * 136.11182 * 180.33692 * 6 5 4 8 8 C 1.39700 * 119.79235 * 180.16416 * 7 6 5 9 9 C 1.40955 * 119.36938 * 179.72560 * 8 7 6 10 10 H 1.08001 * 119.99762 * 25.19850 * 9 8 7 11 11 C 1.40053 * 120.00200 * 205.19220 * 9 8 7 12 12 N 1.30760 * 119.99754 * 17.69831 * 11 9 8 13 13 Si 1.86794 * 120.00174 * 197.69121 * 11 9 8 14 14 H 1.48501 * 109.47162 * 180.02562 * 13 11 9 15 15 H 1.48505 * 109.47149 * 300.00355 * 13 11 9 16 16 H 1.48502 * 109.47115 * 60.00231 * 13 11 9 17 17 C 1.46097 * 121.26069 * 359.45627 * 8 7 6 18 18 C 1.35161 * 120.87125 * 0.27619 * 17 8 7 19 19 C 1.37418 * 126.86332 * 89.99674 * 3 2 1 20 20 H 1.08993 * 109.47367 * 59.99683 * 1 2 3 21 21 H 1.09004 * 109.47493 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46780 * 300.00164 * 1 2 3 23 23 H 1.09004 * 109.46780 * 239.99836 * 2 1 3 24 24 H 1.09002 * 109.47220 * 120.00094 * 2 1 3 25 25 H 1.08003 * 120.10624 * 359.89551 * 7 6 5 26 26 H 0.97000 * 119.99989 * 180.02562 * 12 11 9 27 27 H 1.07999 * 119.56095 * 180.29432 * 17 8 7 28 28 H 1.08000 * 120.30094 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.3001 2.1781 -1.0712 5 7 2.6926 3.2895 -0.7941 6 6 2.7579 3.4765 0.5073 7 6 3.1232 4.5292 1.3609 8 6 3.0658 4.3519 2.7455 9 6 3.4403 5.4130 3.5944 10 1 3.3743 6.4329 3.2453 11 6 3.8978 5.1448 4.8906 12 7 4.3066 3.9429 5.2040 13 14 3.9240 6.5039 6.1718 14 1 4.4482 5.9664 7.4530 15 1 4.7993 7.6085 5.7038 16 1 2.5458 7.0174 6.3769 17 6 2.6196 3.0897 3.3303 18 6 2.2536 2.0524 2.5448 19 6 2.3072 2.1980 1.0994 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8932 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.4518 5.4718 0.9487 26 1 4.6231 3.7570 6.1019 27 1 2.5813 2.9842 4.4045 28 1 1.9248 1.1235 2.9870 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261263943.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:11 Heat of formation + Delta-G solvation = 53.641719 kcal Electronic energy + Delta-G solvation = -13832.879585 eV Core-core repulsion = 11430.193851 eV Total energy + Delta-G solvation = -2402.685735 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.17864 -36.65943 -34.27974 -33.64611 -30.92932 -30.15458 -28.44037 -26.09826 -23.53587 -22.32945 -21.69747 -18.91315 -17.71757 -16.33371 -16.09786 -15.85483 -15.36048 -14.40282 -13.74945 -13.35147 -12.85423 -12.55380 -12.40853 -11.94732 -11.58463 -11.31750 -11.17403 -11.14209 -10.81674 -10.74528 -10.46005 -10.10974 -9.45269 -9.25203 -9.13203 -7.91526 -7.19710 -6.77767 -4.60517 1.71480 2.69875 2.92600 2.95507 3.11117 3.50089 3.71841 4.06229 4.29172 5.15201 5.28760 5.36074 5.49056 5.50699 5.78875 5.89334 5.98821 6.16117 6.33736 6.36820 6.38696 6.70723 6.84045 6.88803 7.40892 7.46771 7.63755 7.76548 7.92773 8.22494 8.59496 8.66478 9.66048 9.83171 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.052923 B = 0.007565 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.946540 B = 3700.163395 C = 4058.885865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.028 4.028 3 C -0.050 4.050 4 O 0.077 5.923 5 N -0.443 5.443 6 C 0.112 3.888 7 C -0.310 4.310 8 C 0.136 3.864 9 C -0.434 4.434 10 H 0.088 0.912 11 C 0.074 3.926 12 N -0.781 5.781 13 Si 0.918 3.082 14 H -0.275 1.275 15 H -0.261 1.261 16 H -0.260 1.260 17 C -0.070 4.070 18 C -0.113 4.113 19 C -0.198 4.198 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.289 0.711 27 H 0.131 0.869 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 -5.667 0.359 7.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.067 4.067 3 C -0.117 4.117 4 O 0.024 5.976 5 N -0.163 5.163 6 C -0.032 4.032 7 C -0.335 4.335 8 C 0.130 3.870 9 C -0.463 4.463 10 H 0.106 0.894 11 C -0.147 4.147 12 N -0.405 5.405 13 Si 0.741 3.259 14 H -0.200 1.200 15 H -0.185 1.185 16 H -0.184 1.184 17 C -0.089 4.089 18 C -0.133 4.133 19 C -0.201 4.201 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.105 0.895 25 H 0.117 0.883 26 H 0.100 0.900 27 H 0.148 0.852 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.842 -5.096 -0.569 6.407 hybrid contribution 0.106 0.313 1.416 1.454 sum -3.736 -4.783 0.847 6.128 Atomic orbital electron populations 1.21767 0.94420 1.01603 1.02722 1.19857 0.95884 0.87538 1.03394 1.23874 1.05233 0.95751 0.86828 1.84482 1.61978 1.18113 1.33024 1.74056 1.28281 0.98120 1.15861 1.21657 0.97460 0.95544 0.88497 1.19368 1.25393 0.98005 0.90740 1.18293 0.86819 0.91070 0.90824 1.19737 1.35416 0.95151 0.96025 0.89370 1.26130 0.92141 0.96909 0.99529 1.69758 1.27024 1.21807 1.21920 0.86186 0.80149 0.80963 0.78581 1.19997 1.18547 1.18401 1.22419 0.94177 0.92574 0.99688 1.20674 1.05004 0.98687 0.88913 1.20878 1.09695 0.94845 0.94693 0.92392 0.92094 0.92178 0.90396 0.89534 0.88322 0.89993 0.85152 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.89 37.15 0.37 -1.46 15 2 C -0.03 -0.40 6.51 -27.89 -0.18 -0.59 15 3 C -0.05 -1.01 6.82 -34.61 -0.24 -1.25 15 4 O 0.08 1.74 11.06 17.52 0.19 1.94 15 5 N -0.44 -11.33 12.12 33.14 0.40 -10.92 15 6 C 0.11 2.97 7.56 -83.18 -0.63 2.34 15 7 C -0.31 -8.40 9.81 -38.23 -0.38 -8.77 15 8 C 0.14 3.59 5.68 -105.17 -0.60 2.99 15 9 C -0.43 -10.99 8.98 -37.87 -0.34 -11.33 15 10 H 0.09 2.15 7.91 -52.49 -0.42 1.74 15 11 C 0.07 1.70 5.12 -17.33 -0.09 1.62 15 12 N -0.78 -18.42 10.92 55.55 0.61 -17.82 15 13 Si 0.92 17.19 29.59 -169.99 -5.03 12.16 15 14 H -0.28 -4.98 7.11 56.52 0.40 -4.57 15 15 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 16 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 17 C -0.07 -1.71 8.70 -37.53 -0.33 -2.03 15 18 C -0.11 -2.54 10.25 -37.84 -0.39 -2.92 15 19 C -0.20 -4.65 6.62 -103.39 -0.68 -5.33 15 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.10 2.64 8.06 -52.48 -0.42 2.22 15 26 H 0.29 6.11 8.29 -40.82 -0.34 5.77 15 27 H 0.13 3.08 6.21 -52.49 -0.33 2.76 15 28 H 0.11 2.01 8.06 -52.49 -0.42 1.59 15 LS Contribution 250.22 15.07 3.77 3.77 Total: -1.00 -28.57 250.22 -6.37 -34.94 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -2.83 Total: 2.67 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -3.48 Total: -26.74 kcal Atomic # 7 Polarization: -29.75 SS G_CDS: 1.01 Total: -28.74 kcal Atomic # 8 Polarization: 1.74 SS G_CDS: 0.19 Total: 1.94 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.57 -6.37 -34.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263943.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.585 kcal (2) G-P(sol) polarization free energy of solvation -28.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds