Wall clock time and date at job start Mon Mar 30 2020 02:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47578 * 2 1 4 4 O 1.33893 * 126.86411 * 270.00577 * 3 2 1 5 5 N 1.21076 * 113.63263 * 179.97438 * 4 3 2 6 6 C 1.31635 * 111.88657 * 359.97438 * 5 4 3 7 7 C 1.40370 * 136.11182 * 180.33692 * 6 5 4 8 8 C 1.39700 * 119.79235 * 180.16416 * 7 6 5 9 9 C 1.40955 * 119.36938 * 179.72560 * 8 7 6 10 10 H 1.08001 * 119.99762 * 25.19850 * 9 8 7 11 11 C 1.40053 * 120.00200 * 205.19220 * 9 8 7 12 12 N 1.30760 * 119.99754 * 17.69831 * 11 9 8 13 13 Si 1.86794 * 120.00174 * 197.69121 * 11 9 8 14 14 H 1.48501 * 109.47162 * 180.02562 * 13 11 9 15 15 H 1.48505 * 109.47149 * 300.00355 * 13 11 9 16 16 H 1.48502 * 109.47115 * 60.00231 * 13 11 9 17 17 C 1.46097 * 121.26069 * 359.45627 * 8 7 6 18 18 C 1.35161 * 120.87125 * 0.27619 * 17 8 7 19 19 C 1.37418 * 126.86332 * 89.99674 * 3 2 1 20 20 H 1.08993 * 109.47367 * 59.99683 * 1 2 3 21 21 H 1.09004 * 109.47493 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46780 * 300.00164 * 1 2 3 23 23 H 1.09004 * 109.46780 * 239.99836 * 2 1 3 24 24 H 1.09002 * 109.47220 * 120.00094 * 2 1 3 25 25 H 1.08003 * 120.10624 * 359.89551 * 7 6 5 26 26 H 0.97000 * 119.99989 * 180.02562 * 12 11 9 27 27 H 1.07999 * 119.56095 * 180.29432 * 17 8 7 28 28 H 1.08000 * 120.30094 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.3001 2.1781 -1.0712 5 7 2.6926 3.2895 -0.7941 6 6 2.7579 3.4765 0.5073 7 6 3.1232 4.5292 1.3609 8 6 3.0658 4.3519 2.7455 9 6 3.4403 5.4130 3.5944 10 1 3.3743 6.4329 3.2453 11 6 3.8978 5.1448 4.8906 12 7 4.3066 3.9429 5.2040 13 14 3.9240 6.5039 6.1718 14 1 4.4482 5.9664 7.4530 15 1 4.7993 7.6085 5.7038 16 1 2.5458 7.0174 6.3769 17 6 2.6196 3.0897 3.3303 18 6 2.2536 2.0524 2.5448 19 6 2.3072 2.1980 1.0994 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8932 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.4518 5.4718 0.9487 26 1 4.6231 3.7570 6.1019 27 1 2.5813 2.9842 4.4045 28 1 1.9248 1.1235 2.9870 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261263943.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:11 Heat of formation + Delta-G solvation = 37.739748 kcal Electronic energy + Delta-G solvation = -13833.569146 eV Core-core repulsion = 11430.193851 eV Total energy + Delta-G solvation = -2403.375296 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.03467 -38.51200 -35.85034 -35.26126 -32.76909 -31.91079 -30.11068 -28.00476 -24.90798 -24.05843 -23.50976 -20.70569 -19.50111 -18.17113 -17.98144 -17.60199 -17.06699 -15.84034 -15.03943 -14.93403 -14.71867 -14.19956 -13.82075 -13.42742 -13.17925 -12.94943 -12.82017 -12.66042 -12.43264 -12.20206 -11.94032 -11.78244 -11.19584 -11.09571 -10.95097 -9.79275 -8.99419 -8.61035 -6.57070 -0.04668 0.95928 1.38433 1.49212 1.53036 1.65223 2.14541 2.47296 2.50953 3.40342 3.49651 3.83957 4.12935 4.27066 4.41394 4.50997 4.53294 4.69394 4.86076 5.03508 5.04676 5.16665 5.18458 5.40609 5.52315 5.61278 5.72734 5.84421 6.04533 6.30694 6.67242 6.75183 7.87073 8.06781 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.052923 B = 0.007565 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.946540 B = 3700.163395 C = 4058.885865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.030 4.030 3 C -0.012 4.012 4 O 0.078 5.922 5 N -0.475 5.475 6 C 0.083 3.917 7 C -0.357 4.357 8 C 0.120 3.880 9 C -0.463 4.463 10 H 0.082 0.918 11 C 0.042 3.958 12 N -0.795 5.795 13 Si 0.994 3.006 14 H -0.256 1.256 15 H -0.262 1.262 16 H -0.255 1.255 17 C -0.102 4.102 18 C -0.088 4.088 19 C -0.236 4.236 20 H 0.051 0.949 21 H 0.099 0.901 22 H 0.047 0.953 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.076 0.924 26 H 0.303 0.697 27 H 0.135 0.865 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.908 -7.758 1.795 9.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 C -0.080 4.080 4 O 0.026 5.974 5 N -0.197 5.197 6 C -0.061 4.061 7 C -0.382 4.382 8 C 0.114 3.886 9 C -0.491 4.491 10 H 0.100 0.900 11 C -0.178 4.178 12 N -0.419 5.419 13 Si 0.812 3.188 14 H -0.180 1.180 15 H -0.186 1.186 16 H -0.179 1.179 17 C -0.121 4.121 18 C -0.107 4.107 19 C -0.240 4.240 20 H 0.070 0.930 21 H 0.117 0.883 22 H 0.066 0.934 23 H 0.125 0.875 24 H 0.127 0.873 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.153 0.847 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.541 -7.210 0.852 8.564 hybrid contribution 0.327 0.842 0.936 1.300 sum -4.214 -6.369 1.788 7.843 Atomic orbital electron populations 1.21767 0.92594 1.03884 1.01900 1.20296 0.97179 0.83356 1.05949 1.25035 1.00801 0.97244 0.84922 1.84431 1.61577 1.17621 1.33759 1.74025 1.30152 0.99677 1.15798 1.21910 0.98037 0.96899 0.89206 1.19357 1.29001 0.98073 0.91815 1.18652 0.86629 0.92602 0.90680 1.20028 1.36494 0.94852 0.97699 0.89985 1.26970 0.90810 0.99563 1.00481 1.69754 1.25601 1.23324 1.23187 0.85070 0.80246 0.77447 0.75998 1.17972 1.18639 1.17946 1.22394 0.96968 0.92691 1.00013 1.21078 1.01920 0.99421 0.88274 1.21195 1.12269 0.94446 0.96049 0.92967 0.88251 0.93374 0.87467 0.87344 0.90556 0.88504 0.84748 0.83176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.89 71.98 0.71 -2.27 15 2 C -0.03 -0.72 6.51 29.85 0.19 -0.53 15 3 C -0.01 -0.48 6.82 25.49 0.17 -0.30 15 4 O 0.08 3.50 11.06 72.82 0.81 4.30 15 5 N -0.47 -25.09 12.12 -49.28 -0.60 -25.69 15 6 C 0.08 4.57 7.56 42.26 0.32 4.89 15 7 C -0.36 -20.74 9.81 23.14 0.23 -20.51 15 8 C 0.12 6.64 5.68 -20.22 -0.11 6.53 15 9 C -0.46 -24.32 8.98 23.38 0.21 -24.11 15 10 H 0.08 4.24 7.91 -2.91 -0.02 4.22 15 11 C 0.04 1.92 5.12 85.29 0.44 2.36 15 12 N -0.79 -36.99 10.92 21.84 0.24 -36.75 15 13 Si 0.99 34.39 29.59 68.60 2.03 36.42 15 14 H -0.26 -8.06 7.11 99.48 0.71 -7.35 15 15 H -0.26 -9.08 7.11 99.48 0.71 -8.38 15 16 H -0.26 -8.66 7.11 99.48 0.71 -7.95 15 17 C -0.10 -5.04 8.70 23.60 0.21 -4.83 15 18 C -0.09 -3.84 10.25 23.40 0.24 -3.60 15 19 C -0.24 -11.04 6.62 -19.07 -0.13 -11.16 15 20 H 0.05 1.15 8.14 -2.39 -0.02 1.13 15 21 H 0.10 1.36 8.14 -2.39 -0.02 1.34 15 22 H 0.05 1.12 8.14 -2.38 -0.02 1.10 15 23 H 0.11 2.07 8.14 -2.38 -0.02 2.05 15 24 H 0.11 2.26 8.14 -2.39 -0.02 2.24 15 25 H 0.08 4.52 8.06 -2.91 -0.02 4.50 15 26 H 0.30 12.32 8.29 -92.71 -0.77 11.55 15 27 H 0.13 6.35 6.21 -2.91 -0.02 6.33 15 28 H 0.15 5.11 8.06 -2.91 -0.02 5.09 15 Total: -1.00 -65.50 250.22 6.12 -59.38 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 1.17 Total: 15.87 kcal Atomic # 6 Polarization: -56.02 SS G_CDS: 2.48 Total: -53.54 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: -0.36 Total: -62.43 kcal Atomic # 8 Polarization: 3.50 SS G_CDS: 0.81 Total: 4.30 kcal Atomic # 14 Polarization: 34.39 SS G_CDS: 2.03 Total: 36.42 kcal Total: -65.50 6.12 -59.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263943.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.118 kcal (2) G-P(sol) polarization free energy of solvation -65.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds