Wall clock time and date at job start Mon Mar 30 2020 02:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47260 * 2 1 4 4 N 1.29885 * 126.24972 * 269.98120 * 3 2 1 5 5 O 1.41334 * 109.79033 * 180.02562 * 4 3 2 6 6 C 1.34958 * 109.27526 * 359.97438 * 5 4 3 7 7 C 1.38268 * 133.22494 * 180.33674 * 6 5 4 8 8 C 1.40514 * 119.58993 * 180.18170 * 7 6 5 9 9 C 1.41122 * 119.97704 * 179.72635 * 8 7 6 10 10 H 1.08002 * 119.99929 * 334.58672 * 9 8 7 11 11 C 1.40059 * 120.00293 * 154.58860 * 9 8 7 12 12 N 1.30760 * 120.00149 * 342.10464 * 11 9 8 13 13 Si 1.86797 * 120.00241 * 162.10206 * 11 9 8 14 14 H 1.48498 * 109.47121 * 94.64584 * 13 11 9 15 15 H 1.48494 * 109.47249 * 214.64801 * 13 11 9 16 16 H 1.48505 * 109.46983 * 334.64782 * 13 11 9 17 17 C 1.41187 * 120.04709 * 359.44928 * 8 7 6 18 18 C 1.35857 * 120.26776 * 0.27051 * 17 8 7 19 19 C 1.40288 * 120.13563 * 0.02562 * 18 17 8 20 20 H 1.09001 * 109.47110 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47327 * 299.99849 * 1 2 3 22 22 H 1.08999 * 109.47136 * 59.99845 * 1 2 3 23 23 H 1.09000 * 109.46893 * 240.00431 * 2 1 3 24 24 H 1.08999 * 109.47136 * 120.00155 * 2 1 3 25 25 H 1.07998 * 120.20779 * 359.92710 * 7 6 5 26 26 H 0.96995 * 120.00498 * 179.97438 * 12 11 9 27 27 H 1.07998 * 119.86496 * 180.30256 * 17 8 7 28 28 H 1.07999 * 119.93305 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2887 2.1448 -1.0475 5 8 2.7410 3.4225 -0.6470 6 6 2.7625 3.4853 0.7009 7 6 3.1079 4.4798 1.5973 8 6 3.0247 4.2295 2.9774 9 6 3.3808 5.2368 3.8994 10 1 4.0766 6.0110 3.6114 11 6 2.8320 5.2324 5.1880 12 7 1.7534 4.5365 5.4370 13 14 3.6410 6.2208 6.5511 14 1 2.9876 7.5505 6.6531 15 1 3.4958 5.4978 7.8400 16 1 5.0828 6.4001 6.2438 17 6 2.5796 2.9729 3.4424 18 6 2.2352 1.9990 2.5600 19 6 2.3205 2.2366 1.1801 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.4436 5.4417 1.2388 26 1 1.3735 4.5332 6.3294 27 1 2.5121 2.7854 4.5038 28 1 1.8949 1.0399 2.9217 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261273941.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:16 Heat of formation + Delta-G solvation = 32.192457 kcal Electronic energy + Delta-G solvation = -13799.392378 eV Core-core repulsion = 11395.776533 eV Total energy + Delta-G solvation = -2403.615844 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.31548 -36.63395 -34.57048 -33.58190 -30.76196 -29.64906 -28.67089 -25.59962 -23.82470 -21.43673 -21.22922 -19.15129 -17.66355 -16.09535 -15.52182 -15.29293 -14.73988 -14.10258 -13.74605 -13.55828 -12.74249 -12.64825 -12.29399 -12.02171 -11.49568 -11.41124 -11.17894 -11.08989 -10.97143 -10.60099 -10.36149 -10.11369 -9.83483 -9.63245 -9.34372 -7.65399 -7.34919 -7.10551 -4.71863 1.94431 2.75881 2.91065 2.92791 2.97633 3.26221 3.66306 3.77671 4.31970 4.96704 5.15541 5.36584 5.50205 5.64905 5.70387 5.91672 5.98273 6.25937 6.35574 6.43578 6.66718 6.71423 6.87424 6.95678 7.24450 7.48465 7.55905 7.74238 7.88839 8.20125 8.38075 8.53286 8.67146 9.79198 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.050807 B = 0.007663 C = 0.006875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.968402 B = 3652.825276 C = 4071.459650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.137 3.863 4 N -0.355 5.355 5 O -0.124 6.124 6 C 0.118 3.882 7 C -0.262 4.262 8 C 0.151 3.849 9 C -0.434 4.434 10 H 0.089 0.911 11 C 0.074 3.926 12 N -0.770 5.770 13 Si 0.917 3.083 14 H -0.266 1.266 15 H -0.272 1.272 16 H -0.256 1.256 17 C -0.165 4.165 18 C -0.043 4.043 19 C -0.309 4.309 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.289 0.711 27 H 0.127 0.873 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 -4.887 0.688 5.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.039 4.039 4 N -0.105 5.105 5 O -0.133 6.133 6 C 0.066 3.934 7 C -0.284 4.284 8 C 0.146 3.854 9 C -0.462 4.462 10 H 0.107 0.893 11 C -0.147 4.147 12 N -0.393 5.393 13 Si 0.740 3.260 14 H -0.191 1.191 15 H -0.196 1.196 16 H -0.180 1.180 17 C -0.185 4.185 18 C -0.063 4.063 19 C -0.315 4.315 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.096 0.904 24 H 0.104 0.896 25 H 0.124 0.876 26 H 0.100 0.900 27 H 0.144 0.856 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.967 -4.782 -0.484 4.903 hybrid contribution 0.195 0.440 1.442 1.520 sum -0.773 -4.342 0.958 4.513 Atomic orbital electron populations 1.21689 0.93933 1.01774 1.02839 1.20023 0.96435 0.88807 1.03374 1.24129 0.92360 0.96005 0.91379 1.79541 1.22064 0.90075 1.18784 1.88938 1.76309 1.28938 1.19080 1.20053 0.94918 0.95363 0.83070 1.19740 1.20544 0.97366 0.90766 1.17442 0.85851 0.91986 0.90078 1.19786 1.21838 1.09354 0.95206 0.89300 1.26115 0.93490 0.95040 1.00105 1.69787 1.14409 1.31553 1.23519 0.86136 0.81022 0.79818 0.79017 1.19103 1.19624 1.17953 1.21022 1.05318 0.92776 0.99336 1.19913 0.98047 0.98037 0.90331 1.19994 1.22831 0.94590 0.94098 0.91945 0.91890 0.92477 0.90391 0.89620 0.87628 0.90009 0.85567 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.89 37.16 0.37 -1.58 15 2 C -0.05 -0.73 6.53 -27.88 -0.18 -0.91 15 3 C 0.14 2.88 6.71 -80.16 -0.54 2.34 15 4 N -0.36 -8.24 12.81 34.87 0.45 -7.80 15 5 O -0.12 -3.16 12.07 7.30 0.09 -3.07 15 6 C 0.12 3.03 7.46 -38.58 -0.29 2.74 15 7 C -0.26 -6.70 9.81 -38.71 -0.38 -7.08 15 8 C 0.15 3.86 5.57 -106.83 -0.59 3.27 15 9 C -0.43 -10.67 9.03 -37.81 -0.34 -11.01 15 10 H 0.09 2.08 7.91 -52.49 -0.42 1.66 15 11 C 0.07 1.69 5.12 -17.33 -0.09 1.60 15 12 N -0.77 -18.01 10.98 55.55 0.61 -17.40 15 13 Si 0.92 16.82 29.60 -169.99 -5.03 11.79 15 14 H -0.27 -4.85 7.11 56.52 0.40 -4.44 15 15 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 16 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 17 C -0.17 -4.03 8.60 -39.32 -0.34 -4.37 15 18 C -0.04 -0.98 10.03 -39.66 -0.40 -1.37 15 19 C -0.31 -7.31 6.33 -104.89 -0.66 -7.97 15 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 24 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.11 2.56 8.06 -52.49 -0.42 2.13 15 26 H 0.29 6.03 8.29 -40.82 -0.34 5.69 15 27 H 0.13 3.06 6.17 -52.49 -0.32 2.73 15 28 H 0.10 1.90 8.06 -52.49 -0.42 1.48 15 LS Contribution 251.04 15.07 3.78 3.78 Total: -1.00 -27.65 251.04 -6.38 -34.03 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -2.83 Total: 3.00 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -3.44 Total: -24.34 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 1.06 Total: -25.20 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: 0.09 Total: -3.07 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.65 -6.38 -34.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273941.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.225 kcal (2) G-P(sol) polarization free energy of solvation -27.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds