Wall clock time and date at job start Mon Mar 30 2020 02:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 C 1.37953 * 120.06125 * 300.00087 * 12 2 1 14 14 C 1.38676 * 120.47678 * 180.02562 * 13 12 2 15 15 C 1.37720 * 120.42023 * 0.02562 * 14 13 12 16 16 C 1.39549 * 119.73309 * 0.02562 * 15 14 13 17 17 N 1.36056 * 133.81572 * 180.02562 * 16 15 14 18 18 C 1.29912 * 108.80571 * 179.24148 * 17 16 15 19 19 O 1.34236 * 110.28865 * 0.65737 * 18 17 16 20 20 C 1.35120 * 108.16640 * 359.43472 * 19 18 17 21 21 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.08005 * 119.76158 * 359.97438 * 13 12 2 26 26 H 1.08000 * 119.78900 * 179.97438 * 14 13 12 27 27 H 1.08001 * 120.13979 * 180.02562 * 15 14 13 28 28 H 1.07994 * 124.85675 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 6 2.0323 -0.7103 -1.2306 13 6 1.6998 -2.0310 -1.4502 14 6 2.1577 -2.6932 -2.5794 15 6 2.9514 -2.0407 -3.4965 16 6 3.2966 -0.7050 -3.2868 17 7 4.0421 0.1957 -3.9827 18 6 4.0335 1.3277 -3.3455 19 8 3.3105 1.2225 -2.2193 20 6 2.8268 -0.0369 -2.1454 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7006 1.1552 3.4844 25 1 1.0790 -2.5533 -0.7373 26 1 1.8910 -3.7273 -2.7401 27 1 3.3051 -2.5607 -4.3746 28 1 4.5440 2.2224 -3.6698 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261280770.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:36 Heat of formation + Delta-G solvation = 28.401709 kcal Electronic energy + Delta-G solvation = -14089.624140 eV Core-core repulsion = 11685.843916 eV Total energy + Delta-G solvation = -2403.780224 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.70202 -37.76274 -34.97419 -33.56029 -31.31879 -29.32630 -28.15550 -25.19126 -23.53334 -22.47779 -21.92866 -19.51078 -17.52624 -16.80756 -16.23386 -15.97300 -15.44464 -14.61226 -13.91742 -13.28040 -13.07949 -12.52938 -12.02289 -11.73798 -11.60960 -11.30781 -11.12318 -10.92876 -10.68252 -10.53706 -10.22219 -10.11838 -9.41597 -9.07639 -8.42775 -8.21335 -7.67872 -6.06237 -4.14190 1.25854 1.81125 2.94073 3.14978 3.28679 3.33308 3.36233 4.21559 4.31789 4.40334 5.05564 5.24601 5.40362 5.64354 5.76274 5.88224 5.96165 6.40096 6.54993 6.69069 6.76933 6.88232 6.99054 7.05130 7.14559 7.29238 7.63966 7.85828 7.99545 8.04310 8.29732 8.87600 9.50633 10.99421 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.036174 B = 0.009145 C = 0.008500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.847898 B = 3060.962516 C = 3293.395594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.071 3.929 3 H 0.037 0.963 4 C -0.512 4.512 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.003 4.003 13 C -0.098 4.098 14 C -0.116 4.116 15 C -0.096 4.096 16 C 0.011 3.989 17 N -0.494 5.494 18 C 0.213 3.787 19 O -0.209 6.209 20 C 0.010 3.990 21 H 0.031 0.969 22 H 0.088 0.912 23 H 0.008 0.992 24 H 0.262 0.738 25 H 0.140 0.860 26 H 0.128 0.872 27 H 0.124 0.876 28 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 -2.084 -8.559 9.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.052 3.948 3 H 0.056 0.944 4 C -0.550 4.550 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.201 1.201 12 C -0.004 4.004 13 C -0.116 4.116 14 C -0.135 4.135 15 C -0.116 4.116 16 C -0.100 4.100 17 N -0.224 5.224 18 C -0.019 4.019 19 O -0.099 6.099 20 C -0.040 4.040 21 H 0.050 0.950 22 H 0.107 0.893 23 H 0.027 0.973 24 H 0.072 0.928 25 H 0.157 0.843 26 H 0.146 0.854 27 H 0.142 0.858 28 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 2.437 -2.082 -8.955 9.512 hybrid contribution 0.176 -0.128 1.385 1.402 sum 2.613 -2.210 -7.570 8.308 Atomic orbital electron populations 1.21801 0.97138 0.99502 1.00480 1.17899 0.93177 0.95669 0.88028 0.94449 1.21049 1.31581 1.12623 0.89709 0.92339 1.24955 0.94916 0.94964 0.98980 1.69872 1.36320 1.22777 1.23676 0.86603 0.79242 0.79793 0.82078 1.20251 1.21204 1.20098 1.19699 0.92785 0.93267 0.94688 1.20957 1.00421 0.93060 0.97154 1.21009 0.98240 0.99808 0.94465 1.20021 1.00287 0.90821 1.00421 1.19804 1.00418 0.96128 0.93619 1.70522 1.20532 1.00535 1.30846 1.28075 0.93224 0.98745 0.81826 1.84554 1.54913 1.30106 1.40349 1.20351 1.01935 0.82764 0.98967 0.94973 0.89340 0.97264 0.92766 0.84268 0.85443 0.85822 0.73636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.78 37.16 0.33 -2.81 15 2 C 0.07 1.78 2.48 -92.92 -0.23 1.55 15 3 H 0.04 1.04 7.82 -51.93 -0.41 0.64 15 4 C -0.51 -13.81 8.24 -34.44 -0.28 -14.10 15 5 H 0.06 1.56 7.60 -52.49 -0.40 1.16 15 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 15 7 N -0.89 -24.95 11.31 55.43 0.63 -24.33 15 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 15 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 15 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 15 12 C 0.00 -0.08 4.74 -104.58 -0.50 -0.57 15 13 C -0.10 -1.88 8.70 -39.52 -0.34 -2.22 15 14 C -0.12 -1.88 10.02 -39.61 -0.40 -2.28 15 15 C -0.10 -1.64 10.10 -39.28 -0.40 -2.03 15 16 C 0.01 0.22 7.24 -84.71 -0.61 -0.40 15 17 N -0.49 -8.84 11.34 -12.54 -0.14 -8.98 15 18 C 0.21 3.27 13.13 51.95 0.68 3.95 15 19 O -0.21 -4.14 10.61 3.59 0.04 -4.11 15 20 C 0.01 0.20 7.06 -38.65 -0.27 -0.07 15 21 H 0.03 0.71 7.38 -51.93 -0.38 0.32 15 22 H 0.09 2.31 6.06 -51.93 -0.31 1.99 15 23 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 15 24 H 0.26 7.03 8.31 -40.82 -0.34 6.70 15 25 H 0.14 2.58 7.56 -52.48 -0.40 2.18 15 26 H 0.13 1.60 8.06 -52.49 -0.42 1.17 15 27 H 0.12 1.77 8.06 -52.49 -0.42 1.35 15 28 H 0.25 2.18 8.06 -52.49 -0.42 1.75 15 LS Contribution 246.94 15.07 3.72 3.72 Total: -1.00 -30.70 246.94 -5.62 -36.32 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -2.73 Total: -1.22 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.12 Total: -17.34 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.48 Total: -33.31 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.70 -5.62 -36.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280770.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.725 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds