Wall clock time and date at job start Mon Mar 30 2020 02:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37909 * 120.10650 * 2 1 4 4 C 1.38585 * 120.30323 * 180.02562 * 3 2 1 5 5 C 1.38390 * 120.55072 * 0.02562 * 4 3 2 6 6 O 1.35933 * 120.06099 * 180.02562 * 5 4 3 7 7 C 1.39527 * 119.87731 * 0.02562 * 5 4 3 8 8 N 1.38244 * 132.81126 * 179.97438 * 7 5 4 9 9 H 0.96993 * 124.70243 * 359.97438 * 8 7 5 10 10 C 1.35560 * 110.59829 * 179.97438 * 8 7 5 11 11 C 1.38911 * 109.27817 * 0.02562 * 10 8 7 12 12 C 1.40894 * 126.92518 * 179.97438 * 11 10 8 13 13 H 1.08000 * 119.99969 * 157.88900 * 12 11 10 14 14 C 1.39717 * 119.99741 * 337.89538 * 12 11 10 15 15 N 1.31066 * 119.99805 * 169.40043 * 14 12 11 16 16 Si 1.86796 * 120.00289 * 349.40070 * 14 12 11 17 17 H 1.48502 * 109.47359 * 84.71918 * 16 14 12 18 18 H 1.48507 * 109.47201 * 204.71904 * 16 14 12 19 19 H 1.48498 * 109.47050 * 324.71927 * 16 14 12 20 20 C 1.39279 * 120.09756 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.47300 * 264.26215 * 1 2 3 22 22 H 1.09000 * 109.46522 * 24.25581 * 1 2 3 23 23 H 1.08996 * 109.47535 * 144.25315 * 1 2 3 24 24 H 1.08003 * 119.84832 * 0.02562 * 3 2 1 25 25 H 1.07993 * 119.72434 * 180.28132 * 4 3 2 26 26 H 0.96702 * 114.00030 * 90.00357 * 6 5 4 27 27 H 1.07999 * 125.35703 * 179.97438 * 10 8 7 28 28 H 0.97002 * 120.00198 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1930 0.0000 4 6 3.5846 1.1978 -0.0005 5 6 4.2921 0.0084 -0.0016 6 8 5.6514 0.0247 -0.0016 7 6 3.6077 -1.2074 -0.0027 8 7 4.0306 -2.5236 -0.0043 9 1 4.9587 -2.8054 -0.0054 10 6 2.9684 -3.3658 -0.0043 11 6 1.7944 -2.6234 -0.0032 12 6 0.4770 -3.1229 -0.0033 13 1 -0.3350 -2.5044 0.3496 14 6 0.2212 -4.4183 -0.4599 15 7 -0.9576 -4.9591 -0.2702 16 14 1.5590 -5.3796 -1.3405 17 1 2.4271 -6.0504 -0.3396 18 1 0.9368 -6.4015 -2.2202 19 1 2.3767 -4.4511 -2.1617 20 6 2.2055 -1.2050 -0.0005 21 1 -0.3634 -0.1027 1.0225 22 1 -0.3632 0.9370 -0.4222 23 1 -0.3634 -0.8340 -0.6003 24 1 1.6580 2.1279 0.0004 25 1 4.1169 2.1375 0.0041 26 1 6.0447 0.0286 0.8818 27 1 3.0260 -4.4443 -0.0058 28 1 -1.1354 -5.8584 -0.5875 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261293570.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:21 Heat of formation + Delta-G solvation = -19.504793 kcal Electronic energy + Delta-G solvation = -14157.436828 eV Core-core repulsion = 11751.579222 eV Total energy + Delta-G solvation = -2405.857605 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.81095 -38.72882 -37.20411 -35.43227 -32.88917 -31.23332 -30.02986 -27.51354 -25.89600 -23.11895 -22.67380 -21.28078 -19.56105 -18.29789 -17.79475 -16.96645 -16.29226 -16.06827 -15.48124 -15.13853 -15.02213 -14.59706 -13.93310 -13.69156 -13.34569 -13.02835 -12.79655 -12.67215 -12.13314 -12.10163 -11.78809 -11.48908 -11.43920 -11.04292 -10.01616 -8.94593 -8.68823 -8.47573 -6.10656 0.27553 0.84887 1.19607 1.34173 1.46926 1.88618 2.18530 2.62069 2.88051 3.36925 3.47628 4.07183 4.22819 4.29568 4.56690 4.66762 4.87298 4.93977 4.99651 5.08644 5.14088 5.36292 5.43568 5.61296 5.79217 5.97379 6.06855 6.35094 6.44753 6.77263 6.96477 7.00759 7.12983 8.40642 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.034652 B = 0.011622 C = 0.008967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.845166 B = 2408.720149 C = 3121.760114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.043 4.043 3 C -0.165 4.165 4 C -0.113 4.113 5 C 0.052 3.948 6 O -0.502 6.502 7 C 0.072 3.928 8 N -0.572 5.572 9 H 0.416 0.584 10 C -0.166 4.166 11 C 0.004 3.996 12 C -0.447 4.447 13 H 0.069 0.931 14 C 0.037 3.963 15 N -0.876 5.876 16 Si 0.966 3.034 17 H -0.258 1.258 18 H -0.288 1.288 19 H -0.260 1.260 20 C -0.154 4.154 21 H 0.063 0.937 22 H 0.085 0.915 23 H 0.053 0.947 24 H 0.150 0.850 25 H 0.155 0.845 26 H 0.395 0.605 27 H 0.151 0.849 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.976 7.895 0.877 11.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.044 4.044 3 C -0.185 4.185 4 C -0.132 4.132 5 C 0.005 3.995 6 O -0.313 6.313 7 C -0.039 4.039 8 N -0.176 5.176 9 H 0.253 0.747 10 C -0.289 4.289 11 C -0.003 4.003 12 C -0.479 4.479 13 H 0.087 0.913 14 C -0.173 4.173 15 N -0.506 5.506 16 Si 0.793 3.207 17 H -0.185 1.185 18 H -0.215 1.215 19 H -0.185 1.185 20 C -0.160 4.160 21 H 0.081 0.919 22 H 0.104 0.896 23 H 0.072 0.928 24 H 0.168 0.832 25 H 0.173 0.827 26 H 0.252 0.748 27 H 0.168 0.832 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.786 7.569 0.253 11.599 hybrid contribution 0.572 -1.149 0.245 1.307 sum 9.357 6.420 0.499 11.359 Atomic orbital electron populations 1.20779 0.91124 1.02631 1.01915 1.19657 0.96334 0.91432 0.96984 1.20788 0.93624 0.96914 1.07203 1.21179 0.94153 0.96715 1.01169 1.17502 0.82544 0.89184 1.10288 1.84808 1.15528 1.96369 1.34593 1.18894 0.93748 0.85670 1.05625 1.40772 1.07859 1.02924 1.66024 0.74736 1.21846 0.86502 0.94671 1.25873 1.18421 0.92465 0.89894 0.99496 1.18732 0.92503 0.98542 1.38157 0.91314 1.26562 0.97948 0.97803 0.94982 1.69772 1.24086 1.16233 1.40538 0.85575 0.78515 0.77461 0.79146 1.18450 1.21527 1.18473 1.19402 0.92304 0.93992 1.10332 0.91878 0.89616 0.92847 0.83246 0.82739 0.74809 0.83243 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.10 9.11 71.24 0.65 -3.45 15 2 C -0.04 -1.77 5.90 -19.69 -0.12 -1.88 15 3 C -0.17 -5.37 9.66 22.27 0.22 -5.16 15 4 C -0.11 -3.46 9.96 22.39 0.22 -3.24 15 5 C 0.05 1.82 6.72 22.62 0.15 1.97 15 6 O -0.50 -14.24 13.51 -92.79 -1.25 -15.50 15 7 C 0.07 3.04 7.18 38.93 0.28 3.32 15 8 N -0.57 -23.39 5.99 -184.70 -1.11 -24.50 15 9 H 0.42 13.70 8.96 -92.71 -0.83 12.87 15 10 C -0.17 -7.86 9.27 84.28 0.78 -7.08 15 11 C 0.00 0.20 5.64 -19.97 -0.11 0.08 15 12 C -0.45 -25.35 8.89 23.28 0.21 -25.14 15 13 H 0.07 4.10 6.31 -2.91 -0.02 4.08 15 14 C 0.04 2.02 5.51 85.16 0.47 2.49 15 15 N -0.88 -49.63 13.94 21.80 0.30 -49.32 15 16 Si 0.97 44.09 24.53 68.60 1.68 45.77 15 17 H -0.26 -10.94 6.50 99.48 0.65 -10.29 15 18 H -0.29 -12.57 7.11 99.48 0.71 -11.86 15 19 H -0.26 -12.19 6.69 99.48 0.67 -11.52 15 20 C -0.15 -7.25 6.15 -20.05 -0.12 -7.37 15 21 H 0.06 2.35 8.14 -2.39 -0.02 2.33 15 22 H 0.09 2.56 8.05 -2.39 -0.02 2.54 15 23 H 0.05 2.36 6.18 -2.39 -0.01 2.35 15 24 H 0.15 3.75 8.06 -2.91 -0.02 3.72 15 25 H 0.16 3.58 8.06 -2.91 -0.02 3.55 15 26 H 0.40 7.25 9.06 -74.06 -0.67 6.58 15 27 H 0.15 6.82 4.02 -2.91 -0.01 6.81 15 28 H 0.29 14.78 8.30 -92.71 -0.77 14.01 15 Total: -1.00 -65.70 237.40 1.87 -63.83 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -0.38 Total: 25.18 kcal Atomic # 6 Polarization: -48.08 SS G_CDS: 2.62 Total: -45.45 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -0.80 Total: -73.82 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -1.25 Total: -15.50 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.68 Total: 45.77 kcal Total: -65.70 1.87 -63.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293570.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.327 kcal (2) G-P(sol) polarization free energy of solvation -65.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds