Wall clock time and date at job start Mon Mar 30 2020 02:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.50701 * 109.47098 * 239.99607 * 2 1 3 13 13 C 1.38781 * 119.74113 * 300.00379 * 12 2 1 14 14 C 1.37809 * 120.59465 * 179.97438 * 13 12 2 15 15 C 1.38971 * 119.79500 * 0.02562 * 14 13 12 16 16 O 1.34829 * 133.44831 * 180.02562 * 15 14 13 17 17 N 1.41350 * 109.32913 * 179.97438 * 16 15 14 18 18 C 1.29740 * 109.74321 * 359.97438 * 17 16 15 19 19 C 1.40455 * 119.44556 * 359.97438 * 15 14 13 20 20 C 1.36622 * 119.73971 * 119.73011 * 12 2 1 21 21 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 22 22 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 24 24 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 25 25 H 1.07997 * 119.70483 * 359.97438 * 13 12 2 26 26 H 1.08004 * 120.09777 * 180.02562 * 14 13 12 27 27 H 1.08003 * 126.29010 * 180.02562 * 18 17 16 28 28 H 1.08002 * 120.10452 * 359.97438 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 6 2.0323 -0.7105 -1.2304 13 6 1.6937 -2.0392 -1.4446 14 6 2.1429 -2.7058 -2.5640 15 6 2.9427 -2.0435 -3.4876 16 8 3.5211 -2.4142 -4.6478 17 7 4.2367 -1.3198 -5.1845 18 6 4.1199 -0.2928 -4.4003 19 6 3.2833 -0.6988 -3.2674 20 6 2.8129 -0.0399 -2.1291 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3635 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.7088 1.1615 3.4843 25 1 1.0726 -2.5555 -0.7277 26 1 1.8742 -3.7397 -2.7230 27 1 4.5583 0.6821 -4.5541 28 1 3.0683 0.9955 -1.9581 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261300230.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:13 Heat of formation + Delta-G solvation = 52.454821 kcal Electronic energy + Delta-G solvation = -13800.689749 eV Core-core repulsion = 11397.952546 eV Total energy + Delta-G solvation = -2402.737202 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.33132 -37.83158 -34.07583 -33.44448 -31.26684 -30.00718 -28.00276 -25.21289 -22.99626 -22.70922 -21.65951 -20.02202 -17.14837 -16.77357 -15.72379 -15.56439 -15.09585 -14.41258 -14.00893 -13.31869 -13.15183 -12.67460 -12.09730 -11.92081 -11.46343 -11.31715 -11.07442 -10.98412 -10.84351 -10.75398 -10.37505 -10.17488 -9.60300 -9.11398 -8.47833 -8.45983 -7.79924 -6.09806 -4.17529 1.00177 1.83941 2.39863 2.83466 3.26466 3.31637 3.34402 4.13698 4.37720 4.46511 4.67416 5.00554 5.21741 5.54647 5.65445 5.77746 5.85680 6.17344 6.29684 6.51058 6.71770 6.74532 6.91279 7.01296 7.15959 7.23674 7.54821 7.61847 7.82523 7.99361 8.27812 8.84716 9.48058 10.95657 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.048444 B = 0.007274 C = 0.007096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.853531 B = 3848.219547 C = 3945.076905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.074 3.926 3 H 0.037 0.963 4 C -0.513 4.513 5 H 0.057 0.943 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.893 3.107 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.277 1.277 12 C -0.059 4.059 13 C -0.042 4.042 14 C -0.137 4.137 15 C 0.059 3.941 16 O -0.105 6.105 17 N -0.308 5.308 18 C 0.109 3.891 19 C -0.204 4.204 20 C -0.056 4.056 21 H 0.010 0.990 22 H 0.029 0.971 23 H 0.087 0.913 24 H 0.262 0.738 25 H 0.141 0.859 26 H 0.129 0.871 27 H 0.205 0.795 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 -1.609 -7.770 8.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.056 3.944 3 H 0.055 0.945 4 C -0.551 4.551 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.202 1.202 12 C -0.059 4.059 13 C -0.061 4.061 14 C -0.156 4.156 15 C 0.006 3.994 16 O -0.116 6.116 17 N -0.050 5.050 18 C -0.091 4.091 19 C -0.208 4.208 20 C -0.076 4.076 21 H 0.029 0.971 22 H 0.048 0.952 23 H 0.105 0.895 24 H 0.072 0.928 25 H 0.159 0.841 26 H 0.147 0.853 27 H 0.221 0.779 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.305 -2.079 -8.773 9.305 hybrid contribution 0.121 -0.055 1.547 1.552 sum 2.425 -2.134 -7.226 7.915 Atomic orbital electron populations 1.21815 0.97469 0.99414 1.00479 1.17886 0.92964 0.95469 0.88089 0.94463 1.21055 1.31598 1.12611 0.89838 0.92441 1.24946 0.94906 0.94937 0.98974 1.69867 1.36374 1.22725 1.23703 0.86630 0.79281 0.79798 0.82180 1.21257 1.20170 1.20235 1.20377 0.94938 0.93980 0.96653 1.21204 0.96200 0.94391 0.94299 1.20014 1.01177 1.00474 0.93968 1.20195 0.96708 0.93982 0.88520 1.89043 1.58543 1.32004 1.32004 1.79703 1.12607 0.94771 1.17935 1.25999 0.93636 0.98874 0.90596 1.20816 1.06180 0.94364 0.99422 1.20423 0.96183 0.99893 0.91135 0.97137 0.95185 0.89461 0.92770 0.84132 0.85276 0.77873 0.85376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.78 37.16 0.33 -2.67 15 2 C 0.07 1.71 2.47 -92.93 -0.23 1.48 15 3 H 0.04 0.92 7.84 -51.93 -0.41 0.51 15 4 C -0.51 -13.09 8.23 -34.44 -0.28 -13.38 15 5 H 0.06 1.46 7.60 -52.49 -0.40 1.06 15 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 15 7 N -0.89 -24.00 11.32 55.43 0.63 -23.37 15 8 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 15 9 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 11 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 12 C -0.06 -1.17 4.70 -105.00 -0.49 -1.67 15 13 C -0.04 -0.76 8.67 -39.54 -0.34 -1.10 15 14 C -0.14 -2.28 10.07 -39.47 -0.40 -2.68 15 15 C 0.06 1.05 7.48 -38.48 -0.29 0.76 15 16 O -0.10 -1.89 12.06 7.66 0.09 -1.80 15 17 N -0.31 -5.06 12.81 31.94 0.41 -4.65 15 18 C 0.11 1.54 12.32 -15.08 -0.19 1.35 15 19 C -0.20 -3.44 6.35 -105.17 -0.67 -4.11 15 20 C -0.06 -1.00 9.66 -39.63 -0.38 -1.39 15 21 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 15 22 H 0.03 0.63 7.36 -51.93 -0.38 0.25 15 23 H 0.09 2.17 6.07 -51.93 -0.32 1.85 15 24 H 0.26 6.81 8.31 -40.82 -0.34 6.47 15 25 H 0.14 2.48 7.54 -52.49 -0.40 2.08 15 26 H 0.13 1.80 8.06 -52.48 -0.42 1.38 15 27 H 0.20 1.86 8.06 -52.48 -0.42 1.44 15 28 H 0.13 2.05 7.91 -52.49 -0.42 1.63 15 LS Contribution 247.98 15.07 3.74 3.74 Total: -1.00 -28.05 247.98 -5.91 -33.97 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -2.72 Total: -1.39 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -3.04 Total: -21.81 kcal Atomic # 7 Polarization: -29.06 SS G_CDS: 1.04 Total: -28.02 kcal Atomic # 8 Polarization: -1.89 SS G_CDS: 0.09 Total: -1.80 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.05 -5.91 -33.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261300230.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.420 kcal (2) G-P(sol) polarization free energy of solvation -28.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds