Wall clock time and date at job start Mon Mar 30 2020 02:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.50701 * 109.47098 * 239.99607 * 2 1 3 13 13 C 1.38781 * 119.74113 * 300.00379 * 12 2 1 14 14 C 1.37809 * 120.59465 * 179.97438 * 13 12 2 15 15 C 1.38971 * 119.79500 * 0.02562 * 14 13 12 16 16 O 1.34829 * 133.44831 * 180.02562 * 15 14 13 17 17 N 1.41350 * 109.32913 * 179.97438 * 16 15 14 18 18 C 1.29740 * 109.74321 * 359.97438 * 17 16 15 19 19 C 1.40455 * 119.44556 * 359.97438 * 15 14 13 20 20 C 1.36622 * 119.73971 * 119.73011 * 12 2 1 21 21 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 22 22 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 24 24 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 25 25 H 1.07997 * 119.70483 * 359.97438 * 13 12 2 26 26 H 1.08004 * 120.09777 * 180.02562 * 14 13 12 27 27 H 1.08003 * 126.29010 * 180.02562 * 18 17 16 28 28 H 1.08002 * 120.10452 * 359.97438 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 6 2.0323 -0.7105 -1.2304 13 6 1.6937 -2.0392 -1.4446 14 6 2.1429 -2.7058 -2.5640 15 6 2.9427 -2.0435 -3.4876 16 8 3.5211 -2.4142 -4.6478 17 7 4.2367 -1.3198 -5.1845 18 6 4.1199 -0.2928 -4.4003 19 6 3.2833 -0.6988 -3.2674 20 6 2.8129 -0.0399 -2.1291 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3635 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.7088 1.1615 3.4843 25 1 1.0726 -2.5555 -0.7277 26 1 1.8742 -3.7397 -2.7230 27 1 4.5583 0.6821 -4.5541 28 1 3.0683 0.9955 -1.9581 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261300230.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:13 Heat of formation + Delta-G solvation = 37.378660 kcal Electronic energy + Delta-G solvation = -13801.343500 eV Core-core repulsion = 11397.952546 eV Total energy + Delta-G solvation = -2403.390954 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.62636 -39.27931 -35.84671 -34.70899 -33.04928 -31.35885 -29.54227 -27.16310 -24.32362 -24.25313 -22.89304 -21.63625 -18.51441 -18.44290 -17.37564 -16.87912 -16.70736 -16.09472 -15.22536 -14.79091 -14.53988 -14.30912 -13.75741 -13.50648 -13.15008 -12.80930 -12.68004 -12.53802 -12.33118 -12.24305 -12.16408 -11.93420 -11.33431 -10.97768 -10.43423 -9.82364 -9.25955 -8.07088 -6.20494 -0.28965 0.43208 1.17821 1.45861 1.46895 1.53577 1.54524 2.44960 2.77079 3.21439 3.35279 3.41256 3.71643 4.14121 4.40435 4.44154 4.53067 4.82364 4.89292 5.03044 5.13982 5.17866 5.28238 5.37424 5.51560 5.68236 5.77331 6.03324 6.10688 6.25385 6.37694 6.88010 7.47786 8.96856 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.048444 B = 0.007274 C = 0.007096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.853531 B = 3848.219547 C = 3945.076905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.076 3.924 3 H 0.014 0.986 4 C -0.522 4.522 5 H 0.053 0.947 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.949 3.051 9 H -0.286 1.286 10 H -0.270 1.270 11 H -0.275 1.275 12 C -0.083 4.083 13 C -0.049 4.049 14 C -0.129 4.129 15 C 0.047 3.953 16 O -0.127 6.127 17 N -0.323 5.323 18 C 0.134 3.866 19 C -0.211 4.211 20 C -0.052 4.052 21 H 0.026 0.974 22 H 0.035 0.965 23 H 0.059 0.941 24 H 0.261 0.739 25 H 0.141 0.859 26 H 0.156 0.844 27 H 0.255 0.745 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 -1.881 -8.595 9.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.057 3.943 3 H 0.032 0.968 4 C -0.560 4.560 5 H 0.072 0.928 6 C -0.180 4.180 7 N -0.554 5.554 8 Si 0.775 3.225 9 H -0.212 1.212 10 H -0.196 1.196 11 H -0.201 1.201 12 C -0.084 4.084 13 C -0.068 4.068 14 C -0.149 4.149 15 C -0.006 4.006 16 O -0.134 6.134 17 N -0.068 5.068 18 C -0.066 4.066 19 C -0.214 4.214 20 C -0.072 4.072 21 H 0.045 0.955 22 H 0.054 0.946 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.159 0.841 26 H 0.173 0.827 27 H 0.271 0.729 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.109 -2.383 -9.599 10.367 hybrid contribution -0.098 0.069 1.725 1.729 sum 3.012 -2.315 -7.874 8.742 Atomic orbital electron populations 1.21668 0.97250 0.99538 0.99860 1.17724 0.93210 0.94272 0.89060 0.96815 1.21360 1.31177 1.12459 0.91042 0.92847 1.25629 0.95236 0.95618 1.01554 1.69990 1.37447 1.23908 1.24055 0.85749 0.78656 0.78959 0.79125 1.21205 1.19559 1.20080 1.20146 0.96978 0.94867 0.96375 1.21184 0.96671 0.93917 0.95021 1.20204 1.00182 1.01546 0.92940 1.20484 0.96782 0.94676 0.88685 1.89033 1.59075 1.33229 1.32091 1.79725 1.13383 0.95007 1.18712 1.26745 0.91543 1.00031 0.88268 1.21048 1.06436 0.94152 0.99777 1.20507 0.95284 1.00538 0.90883 0.95497 0.94615 0.92187 0.92940 0.84108 0.82673 0.72893 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.63 8.78 71.98 0.63 -5.00 15 2 C 0.08 3.52 2.47 -12.29 -0.03 3.49 15 3 H 0.01 0.69 7.84 -2.39 -0.02 0.67 15 4 C -0.52 -26.75 8.23 25.60 0.21 -26.54 15 5 H 0.05 2.72 7.60 -2.91 -0.02 2.69 15 6 C 0.02 0.98 5.30 84.66 0.45 1.43 15 7 N -0.91 -50.05 11.32 21.45 0.24 -49.80 15 8 Si 0.95 41.65 29.54 68.60 2.03 43.68 15 9 H -0.29 -12.45 7.11 99.48 0.71 -11.74 15 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 15 12 C -0.08 -3.25 4.70 -20.11 -0.09 -3.35 15 13 C -0.05 -1.72 8.67 22.30 0.19 -1.53 15 14 C -0.13 -4.10 10.07 22.34 0.23 -3.87 15 15 C 0.05 1.57 7.48 22.99 0.17 1.74 15 16 O -0.13 -4.35 12.06 29.79 0.36 -3.99 15 17 N -0.32 -9.78 12.81 -52.86 -0.68 -10.46 15 18 C 0.13 3.32 12.32 87.18 1.07 4.39 15 19 C -0.21 -6.61 6.35 -20.22 -0.13 -6.73 15 20 C -0.05 -1.78 9.66 22.24 0.21 -1.56 15 21 H 0.03 1.07 8.14 -2.38 -0.02 1.05 15 22 H 0.03 1.50 7.36 -2.39 -0.02 1.49 15 23 H 0.06 3.02 6.07 -2.39 -0.01 3.01 15 24 H 0.26 13.73 8.31 -92.70 -0.77 12.96 15 25 H 0.14 4.88 7.54 -2.91 -0.02 4.86 15 26 H 0.16 3.98 8.06 -2.91 -0.02 3.96 15 27 H 0.26 3.33 8.06 -2.91 -0.02 3.30 15 28 H 0.14 4.31 7.91 -2.91 -0.02 4.29 15 Total: -1.00 -59.66 247.98 6.03 -53.62 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 1.17 Total: 4.49 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 2.92 Total: -37.54 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.43 Total: -60.26 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: 0.36 Total: -3.99 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -59.66 6.03 -53.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261300230.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.002 kcal (2) G-P(sol) polarization free energy of solvation -59.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds