Wall clock time and date at job start Mon Mar 30 2020 02:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33670 * 126.91413 * 2 1 4 4 N 1.21105 * 113.65661 * 179.97438 * 3 2 1 5 5 C 1.31254 * 112.02224 * 359.97438 * 4 3 2 6 6 C 1.37856 * 126.90941 * 179.97438 * 2 1 3 7 7 C 1.40555 * 137.74548 * 0.03709 * 6 2 1 8 8 C 1.35790 * 119.35442 * 179.77895 * 7 6 2 9 9 C 1.39815 * 121.71193 * 0.48297 * 8 7 6 10 10 C 1.35648 * 122.03086 * 359.48046 * 9 8 7 11 11 C 1.50703 * 120.24856 * 180.28079 * 10 9 8 12 12 C 1.50701 * 109.47241 * 265.00276 * 11 10 9 13 13 H 1.08001 * 119.99853 * 0.02562 * 12 11 10 14 14 C 1.37883 * 120.00373 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99619 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00067 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47273 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46767 * 120.00533 * 16 14 12 19 19 H 1.48495 * 109.47266 * 240.00028 * 16 14 12 20 20 H 1.08994 * 109.47462 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47206 * 120.02857 * 1 2 3 22 22 H 1.09007 * 109.47420 * 240.02793 * 1 2 3 23 23 H 1.08000 * 120.32100 * 359.97438 * 7 6 2 24 24 H 1.08007 * 119.14328 * 180.24772 * 8 7 6 25 25 H 1.08002 * 118.98669 * 179.76876 * 9 8 7 26 26 H 1.09002 * 109.47169 * 25.00027 * 11 10 9 27 27 H 1.08996 * 109.47430 * 145.00063 * 11 10 9 28 28 H 0.96995 * 119.99946 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3098 1.0687 0.0000 4 7 3.4886 0.7910 0.0005 5 6 3.6886 -0.5062 0.0015 6 6 2.3349 -1.1023 0.0005 7 6 2.2039 -2.5017 0.0005 8 6 3.3203 -3.2747 -0.0034 9 6 4.6016 -2.7153 0.0025 10 6 4.8008 -1.3735 0.0021 11 6 6.2000 -0.8137 0.0022 12 6 6.6201 -0.5117 1.4176 13 1 5.9419 -0.7061 2.2353 14 6 7.8707 0.0118 1.6689 15 7 8.6968 0.2480 0.6732 16 14 8.3911 0.3868 3.4233 17 1 7.2881 0.0341 4.3529 18 1 9.5977 -0.4097 3.7626 19 1 8.7015 1.8335 3.5490 20 1 -0.3634 1.0276 -0.0005 21 1 -0.3634 -0.5143 -0.8897 22 1 -0.3634 -0.5134 0.8903 23 1 1.2249 -2.9577 0.0004 24 1 3.2157 -4.3497 -0.0075 25 1 5.4593 -3.3716 0.0028 26 1 6.8835 -1.5437 -0.4317 27 1 6.2249 0.1026 -0.5875 28 1 9.5764 0.6166 0.8498 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261312043.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:24 Heat of formation + Delta-G solvation = 66.560886 kcal Electronic energy + Delta-G solvation = -13848.613809 eV Core-core repulsion = 11446.488291 eV Total energy + Delta-G solvation = -2402.125518 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.19440 -37.99346 -33.96599 -32.81347 -31.97799 -30.99989 -27.61183 -27.02009 -24.06271 -23.04641 -22.32707 -18.78587 -17.41115 -17.24070 -16.59623 -16.28037 -15.17271 -14.49999 -13.77159 -13.27278 -13.22519 -13.02071 -12.57853 -12.31633 -11.84037 -11.67220 -11.31111 -11.10436 -10.80969 -10.54231 -10.35154 -9.93189 -9.48098 -9.31749 -8.77217 -8.42501 -7.19215 -6.03642 -4.07784 0.87985 2.03643 2.73327 3.30175 3.37205 3.40446 3.42696 4.18769 4.41048 4.47611 4.78137 5.04992 5.30755 5.33169 5.41106 5.48659 5.63314 5.64071 5.86779 6.09939 6.18499 6.55947 6.68789 6.85271 7.04288 7.33701 7.52225 7.71773 7.90344 8.28052 8.79519 8.95411 9.55398 11.06105 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.035610 B = 0.008490 C = 0.007631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.102669 B = 3297.243473 C = 3668.256881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.053 4.053 3 O 0.137 5.863 4 N -0.347 5.347 5 C 0.047 3.953 6 C -0.165 4.165 7 C -0.110 4.110 8 C -0.094 4.094 9 C -0.139 4.139 10 C 0.014 3.986 11 C 0.049 3.951 12 C -0.508 4.508 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.282 1.282 20 H 0.080 0.920 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.121 0.879 24 H 0.120 0.880 25 H 0.128 0.872 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.176 -4.324 -1.786 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.122 4.122 3 O 0.063 5.937 4 N -0.045 5.045 5 C -0.100 4.100 6 C -0.168 4.168 7 C -0.129 4.129 8 C -0.112 4.112 9 C -0.161 4.161 10 C 0.013 3.987 11 C 0.012 3.988 12 C -0.546 4.546 13 H 0.073 0.927 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 H 0.099 0.901 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.139 0.861 24 H 0.138 0.862 25 H 0.146 0.854 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.069 -3.185 -1.826 14.540 hybrid contribution 0.180 -0.509 0.985 1.123 sum -13.888 -3.694 -0.841 14.396 Atomic orbital electron populations 1.20182 0.83947 1.04099 1.03508 1.24188 0.95205 0.85896 1.06942 1.84648 1.11746 1.33904 1.63421 1.74214 0.93368 1.16190 1.20728 1.21870 0.95152 0.89188 1.03816 1.19988 0.92386 0.95449 1.09009 1.19755 0.98571 0.89539 1.05068 1.20769 0.92383 0.99406 0.98656 1.20569 0.96916 0.94360 1.04218 1.19741 0.95438 0.91412 0.92107 1.18381 0.85368 0.96823 0.98233 1.20980 0.99629 1.42577 0.91424 0.92657 1.24985 0.96450 0.95379 0.97368 1.69961 1.08017 1.44405 1.30795 0.86449 0.78491 0.78076 0.84538 1.19725 1.20828 1.20841 0.90126 0.89677 0.89682 0.86117 0.86166 0.85436 0.94731 0.94896 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.46 36.00 0.38 -0.17 15 2 C -0.05 -0.82 7.58 -34.45 -0.26 -1.08 15 3 O 0.14 2.54 11.05 18.09 0.20 2.74 15 4 N -0.35 -7.90 12.10 33.20 0.40 -7.50 15 5 C 0.05 1.05 7.33 -83.09 -0.61 0.45 15 6 C -0.16 -2.97 6.48 -105.20 -0.68 -3.65 15 7 C -0.11 -1.70 10.08 -39.59 -0.40 -2.09 15 8 C -0.09 -1.49 9.91 -39.87 -0.40 -1.89 15 9 C -0.14 -2.71 9.52 -39.92 -0.38 -3.09 15 10 C 0.01 0.33 5.08 -104.48 -0.53 -0.20 15 11 C 0.05 1.33 5.12 -29.03 -0.15 1.18 15 12 C -0.51 -14.96 9.09 -34.44 -0.31 -15.27 15 13 H 0.06 1.64 7.74 -52.49 -0.41 1.23 15 14 C 0.06 1.75 5.46 -17.82 -0.10 1.66 15 15 N -0.89 -27.21 13.29 55.43 0.74 -26.47 15 16 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 15 17 H -0.27 -6.73 7.11 56.52 0.40 -6.32 15 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15 20 H 0.08 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.08 0.63 8.14 -51.93 -0.42 0.21 15 22 H 0.08 0.66 8.14 -51.93 -0.42 0.23 15 23 H 0.12 1.40 8.06 -52.49 -0.42 0.97 15 24 H 0.12 1.47 8.06 -52.48 -0.42 1.04 15 25 H 0.13 2.34 8.03 -52.49 -0.42 1.91 15 26 H 0.03 0.95 8.03 -51.93 -0.42 0.54 15 27 H 0.03 0.98 8.13 -51.93 -0.42 0.55 15 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 LS Contribution 254.19 15.07 3.83 3.83 Total: -1.00 -33.35 254.19 -6.21 -39.55 By element: Atomic # 1 Polarization: -2.41 SS G_CDS: -2.92 Total: -5.32 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -3.44 Total: -24.17 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 1.14 Total: -33.98 kcal Atomic # 8 Polarization: 2.54 SS G_CDS: 0.20 Total: 2.74 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -33.35 -6.21 -39.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312043.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.113 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds