Wall clock time and date at job start Mon Mar 30 2020 02:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33670 * 126.91413 * 2 1 4 4 N 1.21105 * 113.65661 * 179.97438 * 3 2 1 5 5 C 1.31254 * 112.02224 * 359.97438 * 4 3 2 6 6 C 1.37856 * 126.90941 * 179.97438 * 2 1 3 7 7 C 1.40555 * 137.74548 * 0.03709 * 6 2 1 8 8 C 1.35790 * 119.35442 * 179.77895 * 7 6 2 9 9 C 1.39815 * 121.71193 * 0.48297 * 8 7 6 10 10 C 1.35648 * 122.03086 * 359.48046 * 9 8 7 11 11 C 1.50703 * 120.24856 * 180.28079 * 10 9 8 12 12 C 1.50701 * 109.47241 * 265.00276 * 11 10 9 13 13 H 1.08001 * 119.99853 * 0.02562 * 12 11 10 14 14 C 1.37883 * 120.00373 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99619 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00067 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47273 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46767 * 120.00533 * 16 14 12 19 19 H 1.48495 * 109.47266 * 240.00028 * 16 14 12 20 20 H 1.08994 * 109.47462 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47206 * 120.02857 * 1 2 3 22 22 H 1.09007 * 109.47420 * 240.02793 * 1 2 3 23 23 H 1.08000 * 120.32100 * 359.97438 * 7 6 2 24 24 H 1.08007 * 119.14328 * 180.24772 * 8 7 6 25 25 H 1.08002 * 118.98669 * 179.76876 * 9 8 7 26 26 H 1.09002 * 109.47169 * 25.00027 * 11 10 9 27 27 H 1.08996 * 109.47430 * 145.00063 * 11 10 9 28 28 H 0.96995 * 119.99946 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3098 1.0687 0.0000 4 7 3.4886 0.7910 0.0005 5 6 3.6886 -0.5062 0.0015 6 6 2.3349 -1.1023 0.0005 7 6 2.2039 -2.5017 0.0005 8 6 3.3203 -3.2747 -0.0034 9 6 4.6016 -2.7153 0.0025 10 6 4.8008 -1.3735 0.0021 11 6 6.2000 -0.8137 0.0022 12 6 6.6201 -0.5117 1.4176 13 1 5.9419 -0.7061 2.2353 14 6 7.8707 0.0118 1.6689 15 7 8.6968 0.2480 0.6732 16 14 8.3911 0.3868 3.4233 17 1 7.2881 0.0341 4.3529 18 1 9.5977 -0.4097 3.7626 19 1 8.7015 1.8335 3.5490 20 1 -0.3634 1.0276 -0.0005 21 1 -0.3634 -0.5143 -0.8897 22 1 -0.3634 -0.5134 0.8903 23 1 1.2249 -2.9577 0.0004 24 1 3.2157 -4.3497 -0.0075 25 1 5.4593 -3.3716 0.0028 26 1 6.8835 -1.5437 -0.4317 27 1 6.2249 0.1026 -0.5875 28 1 9.5764 0.6166 0.8498 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261312043.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:23 Heat of formation + Delta-G solvation = 44.943109 kcal Electronic energy + Delta-G solvation = -13849.551226 eV Core-core repulsion = 11446.488291 eV Total energy + Delta-G solvation = -2403.062935 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.66749 -39.45203 -35.74568 -34.47492 -33.38396 -32.67476 -29.14975 -28.49903 -25.79493 -24.51548 -24.12108 -20.21242 -18.86428 -18.79561 -18.50622 -17.99434 -16.73527 -16.25046 -15.29294 -14.67196 -14.60905 -14.24594 -13.93195 -13.62648 -13.43784 -13.31094 -12.92785 -12.81244 -12.55113 -12.44327 -12.14548 -11.70922 -11.24623 -11.08337 -10.69909 -10.19617 -8.69103 -8.24930 -6.42907 -0.45584 0.59982 1.29501 1.32568 1.35321 1.46290 2.25635 2.32175 2.77325 3.01117 3.02456 3.46894 3.80789 4.14520 4.31058 4.40316 4.63900 4.72565 4.81335 4.83263 4.99020 5.11929 5.21653 5.28576 5.35845 5.53623 5.62918 5.83083 5.96795 6.09085 6.67137 7.25005 7.45306 8.81475 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.035610 B = 0.008490 C = 0.007631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.102669 B = 3297.243473 C = 3668.256881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.013 4.013 3 O 0.133 5.867 4 N -0.412 5.412 5 C 0.013 3.987 6 C -0.192 4.192 7 C -0.071 4.071 8 C -0.116 4.116 9 C -0.111 4.111 10 C -0.056 4.056 11 C 0.064 3.936 12 C -0.527 4.527 13 H 0.045 0.955 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.970 3.030 17 H -0.268 1.268 18 H -0.266 1.266 19 H -0.276 1.276 20 H 0.100 0.900 21 H 0.116 0.884 22 H 0.113 0.887 23 H 0.178 0.822 24 H 0.168 0.832 25 H 0.129 0.871 26 H 0.013 0.987 27 H -0.014 1.014 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.678 -5.963 -0.695 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.084 4.084 3 O 0.063 5.937 4 N -0.114 5.114 5 C -0.132 4.132 6 C -0.196 4.196 7 C -0.090 4.090 8 C -0.134 4.134 9 C -0.133 4.133 10 C -0.057 4.057 11 C 0.027 3.973 12 C -0.565 4.565 13 H 0.064 0.936 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.794 3.206 17 H -0.192 1.192 18 H -0.190 1.190 19 H -0.202 1.202 20 H 0.118 0.882 21 H 0.134 0.866 22 H 0.131 0.869 23 H 0.195 0.805 24 H 0.185 0.815 25 H 0.147 0.853 26 H 0.031 0.969 27 H 0.004 0.996 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.585 -4.826 -0.742 18.251 hybrid contribution 1.038 -0.037 0.579 1.189 sum -16.548 -4.863 -0.163 17.248 Atomic orbital electron populations 1.20645 0.78615 1.06440 1.06085 1.25522 0.97508 0.84157 1.01163 1.84591 1.11088 1.34985 1.63053 1.74179 0.95257 1.17173 1.24775 1.22117 0.97130 0.89646 1.04330 1.20470 0.90385 0.97446 1.11318 1.20442 1.00860 0.87991 0.99671 1.21123 0.90449 1.01844 0.99975 1.20860 0.99416 0.92789 1.00251 1.19415 0.93537 0.93408 0.99334 1.17974 0.88539 0.94290 0.96461 1.21253 0.99919 1.42978 0.92306 0.93638 1.25976 0.96329 0.94869 1.02255 1.70086 1.08530 1.45016 1.33279 0.85328 0.78473 0.78173 0.78659 1.19236 1.19046 1.20180 0.88153 0.86618 0.86908 0.80475 0.81478 0.85328 0.96861 0.99566 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.46 71.23 0.75 -0.02 15 2 C -0.01 -0.37 7.58 25.59 0.19 -0.17 15 3 O 0.13 4.96 11.05 74.84 0.83 5.79 15 4 N -0.41 -19.81 12.10 -49.15 -0.59 -20.41 15 5 C 0.01 0.61 7.33 42.48 0.31 0.92 15 6 C -0.19 -6.50 6.48 -20.24 -0.13 -6.64 15 7 C -0.07 -1.85 10.08 22.27 0.22 -1.63 15 8 C -0.12 -3.30 9.91 22.08 0.22 -3.08 15 9 C -0.11 -4.40 9.52 22.05 0.21 -4.19 15 10 C -0.06 -2.76 5.08 -19.78 -0.10 -2.86 15 11 C 0.06 3.84 5.12 29.10 0.15 3.99 15 12 C -0.53 -32.96 9.09 25.60 0.23 -32.73 15 13 H 0.05 2.85 7.74 -2.91 -0.02 2.82 15 14 C 0.00 0.23 5.46 84.66 0.46 0.70 15 15 N -0.93 -59.41 13.29 21.45 0.28 -59.13 15 16 Si 0.97 47.21 29.54 68.60 2.03 49.24 15 17 H -0.27 -12.71 7.11 99.48 0.71 -12.01 15 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 15 20 H 0.10 0.95 8.14 -2.39 -0.02 0.93 15 21 H 0.12 0.92 8.14 -2.39 -0.02 0.90 15 22 H 0.11 0.96 8.14 -2.38 -0.02 0.94 15 23 H 0.18 2.66 8.06 -2.91 -0.02 2.64 15 24 H 0.17 3.18 8.06 -2.91 -0.02 3.15 15 25 H 0.13 4.83 8.03 -2.91 -0.02 4.81 15 26 H 0.01 0.80 8.03 -2.39 -0.02 0.78 15 27 H -0.01 -0.93 8.13 -2.39 -0.02 -0.95 15 28 H 0.27 15.83 8.31 -92.71 -0.77 15.06 15 Total: -1.00 -81.17 254.19 6.22 -74.95 By element: Atomic # 1 Polarization: -5.89 SS G_CDS: 1.16 Total: -4.73 kcal Atomic # 6 Polarization: -48.22 SS G_CDS: 2.52 Total: -45.71 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -0.31 Total: -79.54 kcal Atomic # 8 Polarization: 4.96 SS G_CDS: 0.83 Total: 5.79 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -81.17 6.22 -74.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312043.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.895 kcal (2) G-P(sol) polarization free energy of solvation -81.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds