Wall clock time and date at job start Mon Mar 30 2020 02:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47334 * 2 1 4 4 C 1.47200 * 109.47344 * 239.99905 * 2 1 3 5 5 N 2.60800 * 109.47272 * 239.99943 * 2 1 3 6 6 C 1.50700 * 109.47309 * 120.00030 * 2 1 3 7 7 C 1.36452 * 119.90976 * 59.99965 * 6 2 1 8 8 C 1.40812 * 119.81333 * 180.28133 * 7 6 2 9 9 C 1.41215 * 120.17709 * 179.70404 * 8 7 6 10 10 H 1.07999 * 120.00597 * 24.44428 * 9 8 7 11 11 C 1.39892 * 119.99718 * 204.44443 * 9 8 7 12 12 N 1.30884 * 119.99919 * 17.81332 * 11 9 8 13 13 Si 1.86797 * 119.99893 * 197.81463 * 11 9 8 14 14 H 1.48505 * 109.47251 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47287 * 120.00327 * 13 11 9 16 16 H 1.48503 * 109.47188 * 240.00042 * 13 11 9 17 17 C 1.40852 * 119.63966 * 359.46531 * 8 7 6 18 18 C 1.36413 * 119.81261 * 0.53598 * 17 8 7 19 19 C 1.39291 * 119.90805 * 240.01968 * 6 2 1 20 20 O 1.35680 * 119.81802 * 359.97438 * 19 6 2 21 21 H 1.09000 * 109.46917 * 299.99971 * 1 2 3 22 22 H 1.08994 * 109.47066 * 59.99936 * 1 2 3 23 23 H 1.08999 * 109.46546 * 180.02562 * 1 2 3 24 24 H 1.08002 * 120.08944 * 0.02562 * 7 6 2 25 25 H 0.97006 * 119.99699 * 179.97438 * 12 11 9 26 26 H 1.08006 * 120.09143 * 180.23422 * 17 8 7 27 27 H 1.08003 * 119.90671 * 179.72210 * 18 17 8 28 28 H 0.96700 * 114.00339 * 89.99350 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3994 -1.2294 -2.1294 6 6 2.0324 -0.7104 1.2304 7 6 1.7016 -2.0168 1.4446 8 6 2.1673 -2.6769 2.5979 9 6 1.8245 -4.0270 2.8303 10 1 1.5636 -4.6683 2.0015 11 6 1.8229 -4.5337 4.1342 12 7 1.7909 -3.7146 5.1546 13 14 1.8663 -6.3793 4.4190 14 1 1.8979 -7.0815 3.1108 15 1 3.0795 -6.7313 5.1998 16 1 0.6554 -6.7925 5.1729 17 6 2.9809 -1.9847 3.5160 18 6 3.3024 -0.6789 3.2871 19 6 2.8327 -0.0315 2.1463 20 8 3.1572 1.2674 1.9260 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 1.0810 -2.5418 0.7334 25 1 1.7894 -4.0660 6.0587 26 1 3.3452 -2.4851 4.4012 27 1 3.9225 -0.1454 3.9924 28 1 2.5298 1.8990 2.3034 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306237770.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:30 Heat of formation + Delta-G solvation = -13.089185 kcal Electronic energy + Delta-G solvation = -13782.443054 eV Core-core repulsion = 11376.863650 eV Total energy + Delta-G solvation = -2405.579404 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.87016 -36.37088 -35.81495 -33.87821 -32.74704 -29.42484 -28.34082 -25.08755 -24.05486 -21.08661 -20.69527 -17.67348 -17.26174 -16.45810 -15.52853 -14.67130 -14.35091 -14.04657 -13.44134 -13.22061 -12.88826 -12.59379 -12.29457 -12.00338 -11.56047 -11.46336 -11.38817 -11.17892 -11.01207 -10.73705 -10.62928 -10.25591 -9.83339 -9.33380 -9.08636 -7.69468 -7.36761 -6.90645 -4.46857 2.50043 2.73990 3.01002 3.04010 3.07748 3.24754 3.31570 3.83994 4.33828 4.56337 5.28263 5.31604 5.46152 5.62931 5.68295 6.04366 6.10538 6.20097 6.40137 6.77517 6.90703 6.98988 7.12383 7.39282 7.44130 7.79975 7.87517 8.02420 8.05563 8.39142 8.59728 8.72766 8.89542 10.03260 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.032770 B = 0.008893 C = 0.007664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.231731 B = 3147.776603 C = 3652.760984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.049 3.951 3 H 0.116 0.884 4 C 0.231 3.769 5 N -0.458 5.458 6 C -0.077 4.077 7 C -0.202 4.202 8 C 0.107 3.893 9 C -0.454 4.454 10 H 0.080 0.920 11 C 0.075 3.925 12 N -0.788 5.788 13 Si 0.909 3.091 14 H -0.259 1.259 15 H -0.271 1.271 16 H -0.273 1.273 17 C -0.150 4.150 18 C -0.115 4.115 19 C -0.031 4.031 20 O -0.501 6.501 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.097 0.903 25 H 0.282 0.718 26 H 0.122 0.878 27 H 0.097 0.903 28 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 4.823 -0.614 5.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.028 3.972 3 H 0.133 0.867 4 C -0.087 4.087 5 N -0.134 5.134 6 C -0.079 4.079 7 C -0.222 4.222 8 C 0.105 3.895 9 C -0.483 4.483 10 H 0.098 0.902 11 C -0.143 4.143 12 N -0.413 5.413 13 Si 0.733 3.267 14 H -0.183 1.183 15 H -0.196 1.196 16 H -0.199 1.199 17 C -0.169 4.169 18 C -0.134 4.134 19 C -0.076 4.076 20 O -0.308 6.308 21 H 0.093 0.907 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.140 0.860 27 H 0.115 0.885 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.813 3.755 -2.066 4.653 hybrid contribution -0.527 -0.434 0.989 1.202 sum -2.340 3.321 -1.077 4.203 Atomic orbital electron populations 1.21792 0.92074 1.03365 1.02245 1.17655 0.96133 0.98555 0.84891 0.86674 1.29224 0.92676 0.93102 0.93675 1.81091 1.09558 1.09875 1.12886 1.18917 0.99481 0.95265 0.94223 1.20493 1.06572 0.93512 1.01604 1.17621 0.88648 0.92948 0.90298 1.19626 1.40059 0.95508 0.93134 0.90164 1.25938 0.92061 1.00576 0.95738 1.69837 1.34274 1.37085 1.00095 0.86242 0.78703 0.82180 0.79579 1.18301 1.19564 1.19850 1.21036 1.00405 0.93749 1.01740 1.20705 1.00757 0.96155 0.95757 1.17760 1.07939 0.84000 0.97871 1.84836 1.51999 1.14460 1.79487 0.90688 0.92507 0.91541 0.88534 0.90673 0.85987 0.88533 0.79320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.96 37.16 0.33 -1.49 15 2 C 0.05 0.80 2.91 -94.56 -0.27 0.52 15 3 H 0.12 1.66 6.98 -51.93 -0.36 1.29 15 4 C 0.23 4.26 14.23 -20.76 -0.30 3.97 15 5 N -0.46 -9.31 18.54 42.15 0.78 -8.53 15 6 C -0.08 -1.57 4.75 -104.87 -0.50 -2.07 15 7 C -0.20 -4.62 8.48 -39.25 -0.33 -4.96 15 8 C 0.11 2.71 5.57 -106.80 -0.60 2.12 15 9 C -0.45 -11.54 9.04 -37.83 -0.34 -11.88 15 10 H 0.08 1.99 7.91 -52.49 -0.41 1.57 15 11 C 0.08 1.80 5.13 -17.34 -0.09 1.71 15 12 N -0.79 -19.24 10.96 55.54 0.61 -18.63 15 13 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 15 14 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 15 H -0.27 -5.28 7.11 56.52 0.40 -4.87 15 16 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 17 C -0.15 -3.69 8.64 -39.25 -0.34 -4.03 15 18 C -0.11 -2.57 9.92 -39.83 -0.40 -2.96 15 19 C -0.03 -0.65 6.70 -38.78 -0.26 -0.91 15 20 O -0.50 -8.92 12.23 -18.74 -0.23 -9.15 15 21 H 0.07 0.92 8.14 -51.93 -0.42 0.49 15 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.07 0.96 7.36 -51.93 -0.38 0.58 15 24 H 0.10 2.14 7.52 -52.49 -0.39 1.74 15 25 H 0.28 6.24 8.30 -40.82 -0.34 5.90 15 26 H 0.12 3.10 6.17 -52.48 -0.32 2.78 15 27 H 0.10 1.97 8.06 -52.48 -0.42 1.55 15 28 H 0.36 4.61 9.06 45.56 0.41 5.02 15 LS Contribution 254.61 15.07 3.84 3.84 Total: -1.00 -27.90 254.61 -4.99 -32.89 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -1.87 Total: 6.62 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -3.09 Total: -19.96 kcal Atomic # 7 Polarization: -28.55 SS G_CDS: 1.39 Total: -27.16 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.23 Total: -9.15 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.90 -4.99 -32.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306237770.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.799 kcal (2) G-P(sol) polarization free energy of solvation -27.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds