Wall clock time and date at job start Mon Mar 30 2020 02:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47334 * 2 1 4 4 C 1.47200 * 109.47344 * 239.99905 * 2 1 3 5 5 N 2.60800 * 109.47272 * 239.99943 * 2 1 3 6 6 C 1.50700 * 109.47309 * 120.00030 * 2 1 3 7 7 C 1.36452 * 119.90976 * 59.99965 * 6 2 1 8 8 C 1.40812 * 119.81333 * 180.28133 * 7 6 2 9 9 C 1.41215 * 120.17709 * 179.70404 * 8 7 6 10 10 H 1.07999 * 120.00597 * 24.44428 * 9 8 7 11 11 C 1.39892 * 119.99718 * 204.44443 * 9 8 7 12 12 N 1.30884 * 119.99919 * 17.81332 * 11 9 8 13 13 Si 1.86797 * 119.99893 * 197.81463 * 11 9 8 14 14 H 1.48505 * 109.47251 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47287 * 120.00327 * 13 11 9 16 16 H 1.48503 * 109.47188 * 240.00042 * 13 11 9 17 17 C 1.40852 * 119.63966 * 359.46531 * 8 7 6 18 18 C 1.36413 * 119.81261 * 0.53598 * 17 8 7 19 19 C 1.39291 * 119.90805 * 240.01968 * 6 2 1 20 20 O 1.35680 * 119.81802 * 359.97438 * 19 6 2 21 21 H 1.09000 * 109.46917 * 299.99971 * 1 2 3 22 22 H 1.08994 * 109.47066 * 59.99936 * 1 2 3 23 23 H 1.08999 * 109.46546 * 180.02562 * 1 2 3 24 24 H 1.08002 * 120.08944 * 0.02562 * 7 6 2 25 25 H 0.97006 * 119.99699 * 179.97438 * 12 11 9 26 26 H 1.08006 * 120.09143 * 180.23422 * 17 8 7 27 27 H 1.08003 * 119.90671 * 179.72210 * 18 17 8 28 28 H 0.96700 * 114.00339 * 89.99350 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3994 -1.2294 -2.1294 6 6 2.0324 -0.7104 1.2304 7 6 1.7016 -2.0168 1.4446 8 6 2.1673 -2.6769 2.5979 9 6 1.8245 -4.0270 2.8303 10 1 1.5636 -4.6683 2.0015 11 6 1.8229 -4.5337 4.1342 12 7 1.7909 -3.7146 5.1546 13 14 1.8663 -6.3793 4.4190 14 1 1.8979 -7.0815 3.1108 15 1 3.0795 -6.7313 5.1998 16 1 0.6554 -6.7925 5.1729 17 6 2.9809 -1.9847 3.5160 18 6 3.3024 -0.6789 3.2871 19 6 2.8327 -0.0315 2.1463 20 8 3.1572 1.2674 1.9260 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 1.0810 -2.5418 0.7334 25 1 1.7894 -4.0660 6.0587 26 1 3.3452 -2.4851 4.4012 27 1 3.9225 -0.1454 3.9924 28 1 2.5298 1.8990 2.3034 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306237770.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:30 Heat of formation + Delta-G solvation = -30.185635 kcal Electronic energy + Delta-G solvation = -13783.184412 eV Core-core repulsion = 11376.863650 eV Total energy + Delta-G solvation = -2406.320761 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.50051 -37.87415 -37.45636 -35.47616 -34.34655 -31.19207 -29.90803 -26.82656 -25.41563 -22.80975 -22.39525 -19.38305 -18.83752 -17.95960 -17.24595 -16.23349 -15.93258 -15.62007 -14.94881 -14.79528 -14.40398 -14.15044 -13.74527 -13.63964 -13.27211 -12.90854 -12.80486 -12.75218 -12.53054 -12.29815 -12.03932 -11.94095 -11.51915 -11.04158 -10.76223 -9.45137 -9.13348 -8.67007 -6.33281 0.81391 0.97878 1.38611 1.45504 1.52592 1.79778 1.81901 2.19785 2.62071 3.12025 3.61941 3.89955 3.97627 4.26926 4.40437 4.50905 4.93191 4.95379 5.02379 5.11563 5.24550 5.34131 5.41108 5.62981 5.79597 6.03611 6.05605 6.25009 6.56608 6.61602 6.88883 6.89931 7.35779 8.29402 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.032770 B = 0.008893 C = 0.007664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.231731 B = 3147.776603 C = 3652.760984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.146 0.854 4 C 0.243 3.757 5 N -0.495 5.495 6 C -0.075 4.075 7 C -0.211 4.211 8 C 0.075 3.925 9 C -0.495 4.495 10 H 0.071 0.929 11 C 0.039 3.961 12 N -0.818 5.818 13 Si 0.977 3.023 14 H -0.264 1.264 15 H -0.264 1.264 16 H -0.263 1.263 17 C -0.171 4.171 18 C -0.125 4.125 19 C -0.012 4.012 20 O -0.499 6.499 21 H 0.090 0.910 22 H 0.086 0.914 23 H 0.049 0.951 24 H 0.095 0.905 25 H 0.290 0.710 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.261 6.255 -0.889 7.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.035 3.965 3 H 0.163 0.837 4 C -0.073 4.073 5 N -0.171 5.171 6 C -0.077 4.077 7 C -0.231 4.231 8 C 0.073 3.927 9 C -0.524 4.524 10 H 0.090 0.910 11 C -0.176 4.176 12 N -0.443 5.443 13 Si 0.798 3.202 14 H -0.187 1.187 15 H -0.189 1.189 16 H -0.187 1.187 17 C -0.191 4.191 18 C -0.143 4.143 19 C -0.057 4.057 20 O -0.309 6.309 21 H 0.109 0.891 22 H 0.105 0.895 23 H 0.068 0.932 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.123 0.877 27 H 0.132 0.868 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.228 5.221 -2.339 6.139 hybrid contribution -0.375 -0.662 1.030 1.281 sum -2.603 4.559 -1.309 5.411 Atomic orbital electron populations 1.21812 0.89584 1.03101 1.04578 1.17869 0.98007 0.98912 0.81736 0.83656 1.29656 0.91693 0.92337 0.93660 1.81107 1.10839 1.10914 1.14281 1.19194 0.98510 0.94422 0.95588 1.20591 1.06811 0.94704 1.00996 1.17947 0.89578 0.93555 0.91618 1.19796 1.42599 0.96186 0.93861 0.91050 1.26653 0.91220 1.04744 0.95006 1.69867 1.34958 1.38876 1.00621 0.85231 0.79108 0.76696 0.79163 1.18736 1.18879 1.18746 1.20960 1.01583 0.94913 1.01639 1.20949 1.00983 0.95522 0.96880 1.17787 1.05869 0.85382 0.96674 1.84739 1.53199 1.13306 1.79636 0.89087 0.89481 0.93163 0.88732 0.89926 0.87717 0.86850 0.75775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.96 71.98 0.64 -2.45 15 2 C 0.06 1.64 2.91 -13.35 -0.04 1.60 15 3 H 0.15 3.45 6.98 -2.39 -0.02 3.44 15 4 C 0.24 8.50 14.23 89.44 1.27 9.78 15 5 N -0.49 -19.55 18.54 20.01 0.37 -19.18 15 6 C -0.08 -2.92 4.75 -20.03 -0.10 -3.02 15 7 C -0.21 -9.71 8.48 22.48 0.19 -9.52 15 8 C 0.08 3.91 5.57 -21.28 -0.12 3.79 15 9 C -0.50 -26.14 9.04 23.40 0.21 -25.93 15 10 H 0.07 3.72 7.91 -2.91 -0.02 3.70 15 11 C 0.04 1.93 5.13 85.23 0.44 2.37 15 12 N -0.82 -40.93 10.96 21.82 0.24 -40.69 15 13 Si 0.98 37.48 29.59 68.60 2.03 39.51 15 14 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 15 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 16 H -0.26 -9.55 7.11 99.48 0.71 -8.85 15 17 C -0.17 -8.62 8.64 22.48 0.19 -8.43 15 18 C -0.12 -5.46 9.92 22.11 0.22 -5.24 15 19 C -0.01 -0.47 6.70 22.79 0.15 -0.32 15 20 O -0.50 -15.59 12.23 -89.98 -1.10 -16.69 15 21 H 0.09 1.87 8.14 -2.39 -0.02 1.85 15 22 H 0.09 1.55 8.14 -2.39 -0.02 1.53 15 23 H 0.05 1.35 7.36 -2.39 -0.02 1.33 15 24 H 0.09 4.27 7.52 -2.91 -0.02 4.25 15 25 H 0.29 13.04 8.30 -92.70 -0.77 12.27 15 26 H 0.10 5.54 6.17 -2.91 -0.02 5.52 15 27 H 0.11 4.47 8.06 -2.91 -0.02 4.45 15 28 H 0.39 7.99 9.06 -74.06 -0.67 7.32 15 Total: -1.00 -61.26 254.61 5.13 -56.12 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.52 Total: 18.30 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 3.07 Total: -37.37 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.61 Total: -59.88 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -1.10 Total: -16.69 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -61.26 5.13 -56.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306237770.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.938 kcal (2) G-P(sol) polarization free energy of solvation -61.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds