Wall clock time and date at job start Mon Mar 30 2020 03:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99609 * 2 1 4 4 C 1.38478 * 119.98433 * 359.97438 * 3 2 1 5 5 C 1.39539 * 119.78727 * 179.97438 * 4 3 2 6 6 C 1.43198 * 120.12126 * 179.97438 * 5 4 3 7 7 N 5.84235 * 81.26998 * 359.97438 * 2 1 3 8 8 C 1.39657 * 119.75220 * 0.02562 * 5 4 3 9 9 C 1.37952 * 119.96134 * 359.97438 * 8 5 4 10 10 C 1.50699 * 119.89398 * 179.97438 * 9 8 5 11 11 C 1.50694 * 109.47157 * 89.99945 * 10 9 8 12 12 H 1.08002 * 120.00323 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00244 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99725 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00222 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47030 * 89.99865 * 15 13 11 17 17 H 1.48500 * 109.47251 * 210.00033 * 15 13 11 18 18 H 1.48505 * 109.46931 * 330.00133 * 15 13 11 19 19 C 1.38291 * 120.21078 * 359.74387 * 9 8 5 20 20 H 1.08996 * 109.47352 * 299.99773 * 1 2 3 21 21 H 1.08999 * 109.47144 * 59.99798 * 1 2 3 22 22 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 23 23 H 1.08003 * 120.10447 * 359.95775 * 4 3 2 24 24 H 1.08003 * 120.02205 * 179.97438 * 8 5 4 25 25 H 1.09005 * 109.47285 * 209.99692 * 10 9 8 26 26 H 1.09001 * 109.47288 * 330.00185 * 10 9 8 27 27 H 0.97002 * 119.99393 * 180.02562 * 14 13 11 28 28 H 1.08001 * 119.87781 * 180.27558 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2914 2.3722 -0.0005 5 6 1.9291 3.6133 0.0000 6 6 1.1557 4.8186 -0.0011 7 7 0.5423 5.7747 -0.0026 8 6 3.3242 3.6757 0.0005 9 6 4.0659 2.5125 0.0011 10 6 5.5713 2.5815 0.0011 11 6 6.0730 2.6052 1.4218 12 1 5.3720 2.5730 2.2428 13 6 7.4272 2.6669 1.6738 14 7 8.2810 2.7056 0.6742 15 14 8.0492 2.6955 3.4350 16 1 8.2777 1.3044 3.9019 17 1 9.3242 3.4543 3.4974 18 1 7.0402 3.3505 4.3057 19 6 3.4323 1.2833 0.0064 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.2127 2.3172 -0.0016 24 1 3.8223 4.6340 0.0006 25 1 5.9751 1.7088 -0.5123 26 1 5.8935 3.4870 -0.5131 27 1 9.2337 2.7486 0.8515 28 1 4.0182 0.3760 0.0113 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306569583.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:30 Heat of formation + Delta-G solvation = 4.080381 kcal Electronic energy + Delta-G solvation = -13355.791848 eV Core-core repulsion = 10950.956972 eV Total energy + Delta-G solvation = -2404.834876 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.94493 -37.66433 -36.15349 -33.43348 -31.51421 -30.31769 -27.53484 -26.93421 -23.67079 -23.18322 -20.89054 -18.21753 -16.59053 -16.37230 -15.91836 -15.63253 -15.60965 -14.59330 -13.81561 -13.70774 -13.11751 -12.84673 -12.56317 -12.51545 -12.05385 -11.84871 -11.41778 -11.28267 -11.00459 -10.73894 -10.60957 -10.59472 -9.74751 -9.54441 -8.48871 -8.26009 -7.91173 -6.11339 -4.15695 1.11877 1.79945 2.82573 3.24678 3.28226 3.35074 3.38942 3.42016 4.09391 4.22336 4.42606 5.04334 5.07659 5.15087 5.24485 5.43644 5.46077 5.53244 5.85847 6.05122 6.16970 6.50152 6.62814 6.87387 7.11541 7.42618 7.54596 7.64218 7.68370 7.84216 8.20022 8.89156 9.49014 10.98640 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.026947 B = 0.007665 C = 0.006593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.820826 B = 3652.021888 C = 4246.121539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.121 3.879 4 C -0.188 4.188 5 C -0.004 4.004 6 C 0.269 3.731 7 N -0.437 5.437 8 C -0.102 4.102 9 C 0.001 3.999 10 C 0.047 3.953 11 C -0.517 4.517 12 H 0.060 0.940 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.120 4.120 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.096 0.904 23 H 0.127 0.873 24 H 0.132 0.868 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.263 0.737 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.767 -4.300 -1.798 12.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.076 3.924 4 C -0.210 4.210 5 C -0.008 4.008 6 C -0.046 4.046 7 N -0.113 5.113 8 C -0.122 4.122 9 C 0.001 3.999 10 C 0.010 3.990 11 C -0.555 4.555 12 H 0.078 0.922 13 C -0.141 4.141 14 N -0.530 5.530 15 Si 0.724 3.276 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.139 4.139 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.115 0.885 23 H 0.145 0.855 24 H 0.150 0.850 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.453 -2.992 -1.842 12.939 hybrid contribution 0.372 -0.210 1.001 1.088 sum -12.081 -3.201 -0.841 12.526 Atomic orbital electron populations 1.23008 0.79035 1.03580 1.01199 1.86102 1.20828 1.26845 1.89165 1.18798 0.92277 0.83489 0.97849 1.20878 0.99407 0.90829 1.09847 1.15713 0.91873 0.86421 1.06779 1.25827 0.92827 0.92891 0.93032 1.81180 1.09584 1.10756 1.09785 1.21107 0.90465 0.99898 1.00775 1.20477 0.99308 0.90286 0.89857 1.18438 0.83222 0.99123 0.98227 1.21023 0.91699 1.51553 0.91192 0.92207 1.24992 0.96856 0.94959 0.97327 1.69949 1.02390 1.49936 1.30764 0.86522 0.78313 0.78194 0.84619 1.20506 1.21161 1.19742 1.20677 0.90379 0.99461 1.03374 0.92816 0.92859 0.88526 0.85529 0.85011 0.94563 0.94601 0.92706 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 15 2 O -0.32 -4.41 10.50 -19.47 -0.20 -4.61 15 3 C 0.12 1.87 6.68 -39.28 -0.26 1.61 15 4 C -0.19 -2.69 8.74 -39.01 -0.34 -3.03 15 5 C 0.00 -0.07 5.73 -106.96 -0.61 -0.68 15 6 C 0.27 4.29 15.33 -22.47 -0.34 3.94 15 7 N -0.44 -7.52 18.54 41.84 0.78 -6.75 15 8 C -0.10 -1.79 9.40 -39.16 -0.37 -2.16 15 9 C 0.00 0.02 5.06 -104.71 -0.53 -0.51 15 10 C 0.05 1.10 5.10 -29.04 -0.15 0.95 15 11 C -0.52 -13.57 9.09 -34.44 -0.31 -13.89 15 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 14 N -0.89 -25.21 13.29 55.43 0.74 -24.48 15 15 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 15 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 19 C -0.12 -2.12 9.63 -39.35 -0.38 -2.49 15 20 H 0.05 0.46 7.66 -51.93 -0.40 0.06 15 21 H 0.05 0.44 7.66 -51.93 -0.40 0.04 15 22 H 0.10 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.13 1.48 6.29 -52.48 -0.33 1.15 15 24 H 0.13 2.27 8.06 -52.48 -0.42 1.84 15 25 H 0.04 0.89 8.09 -51.93 -0.42 0.47 15 26 H 0.04 0.88 8.08 -51.93 -0.42 0.46 15 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 28 H 0.14 2.37 8.06 -52.49 -0.42 1.95 15 LS Contribution 261.28 15.07 3.94 3.94 Total: -1.00 -28.60 261.28 -4.95 -33.55 By element: Atomic # 1 Polarization: -1.16 SS G_CDS: -2.77 Total: -3.93 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -2.40 Total: -13.48 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 1.51 Total: -31.23 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.20 Total: -4.61 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.60 -4.95 -33.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306569583.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.635 kcal (2) G-P(sol) polarization free energy of solvation -28.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds