Wall clock time and date at job start Mon Mar 30 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99609 * 2 1 4 4 C 1.38478 * 119.98433 * 359.97438 * 3 2 1 5 5 C 1.39539 * 119.78727 * 179.97438 * 4 3 2 6 6 C 1.43198 * 120.12126 * 179.97438 * 5 4 3 7 7 N 5.84235 * 81.26998 * 359.97438 * 2 1 3 8 8 C 1.39657 * 119.75220 * 0.02562 * 5 4 3 9 9 C 1.37952 * 119.96134 * 359.97438 * 8 5 4 10 10 C 1.50699 * 119.89398 * 179.97438 * 9 8 5 11 11 C 1.50694 * 109.47157 * 89.99945 * 10 9 8 12 12 H 1.08002 * 120.00323 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00244 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99725 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00222 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47030 * 89.99865 * 15 13 11 17 17 H 1.48500 * 109.47251 * 210.00033 * 15 13 11 18 18 H 1.48505 * 109.46931 * 330.00133 * 15 13 11 19 19 C 1.38291 * 120.21078 * 359.74387 * 9 8 5 20 20 H 1.08996 * 109.47352 * 299.99773 * 1 2 3 21 21 H 1.08999 * 109.47144 * 59.99798 * 1 2 3 22 22 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 23 23 H 1.08003 * 120.10447 * 359.95775 * 4 3 2 24 24 H 1.08003 * 120.02205 * 179.97438 * 8 5 4 25 25 H 1.09005 * 109.47285 * 209.99692 * 10 9 8 26 26 H 1.09001 * 109.47288 * 330.00185 * 10 9 8 27 27 H 0.97002 * 119.99393 * 180.02562 * 14 13 11 28 28 H 1.08001 * 119.87781 * 180.27558 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2914 2.3722 -0.0005 5 6 1.9291 3.6133 0.0000 6 6 1.1557 4.8186 -0.0011 7 7 0.5423 5.7747 -0.0026 8 6 3.3242 3.6757 0.0005 9 6 4.0659 2.5125 0.0011 10 6 5.5713 2.5815 0.0011 11 6 6.0730 2.6052 1.4218 12 1 5.3720 2.5730 2.2428 13 6 7.4272 2.6669 1.6738 14 7 8.2810 2.7056 0.6742 15 14 8.0492 2.6955 3.4350 16 1 8.2777 1.3044 3.9019 17 1 9.3242 3.4543 3.4974 18 1 7.0402 3.3505 4.3057 19 6 3.4323 1.2833 0.0064 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.2127 2.3172 -0.0016 24 1 3.8223 4.6340 0.0006 25 1 5.9751 1.7088 -0.5123 26 1 5.8935 3.4870 -0.5131 27 1 9.2337 2.7486 0.8515 28 1 4.0182 0.3760 0.0113 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306569583.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:29 Heat of formation + Delta-G solvation = -11.927538 kcal Electronic energy + Delta-G solvation = -13356.486003 eV Core-core repulsion = 10950.956972 eV Total energy + Delta-G solvation = -2405.529031 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.16585 -38.87416 -37.50987 -35.28747 -33.14152 -31.61252 -29.04748 -28.05003 -25.25763 -24.75638 -22.20013 -19.58033 -18.42988 -17.72295 -17.19009 -16.90763 -16.58016 -16.49827 -15.00554 -14.92510 -14.57075 -14.38672 -14.16116 -13.93837 -13.34833 -13.15814 -13.01302 -12.80356 -12.50062 -12.40466 -12.07466 -11.92708 -11.51253 -11.40132 -10.55698 -9.70350 -9.17399 -8.16760 -6.28093 -0.20021 0.48050 1.44948 1.45516 1.53769 1.56270 1.93491 2.38710 2.45023 2.79653 2.93018 3.16528 3.91051 4.09302 4.18302 4.40331 4.50220 4.53201 4.65515 4.79697 4.85129 5.19708 5.26450 5.29891 5.41060 5.72022 5.78904 5.91629 6.19903 6.36273 6.47813 6.84649 7.40417 8.93037 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.026947 B = 0.007665 C = 0.006593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.820826 B = 3652.021888 C = 4246.121539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.328 6.328 3 C 0.131 3.869 4 C -0.166 4.166 5 C 0.004 3.996 6 C 0.286 3.714 7 N -0.455 5.455 8 C -0.109 4.109 9 C -0.019 4.019 10 C 0.054 3.946 11 C -0.528 4.528 12 H 0.059 0.941 13 C 0.008 3.992 14 N -0.928 5.928 15 Si 0.960 3.040 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.266 1.266 19 C -0.129 4.129 20 H 0.066 0.934 21 H 0.069 0.931 22 H 0.121 0.879 23 H 0.164 0.836 24 H 0.127 0.873 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.265 0.735 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.997 -4.818 -0.975 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.242 6.242 3 C 0.085 3.915 4 C -0.187 4.187 5 C 0.001 3.999 6 C -0.029 4.029 7 N -0.130 5.130 8 C -0.130 4.130 9 C -0.020 4.020 10 C 0.017 3.983 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.190 4.190 14 N -0.568 5.568 15 Si 0.785 3.215 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.191 1.191 19 C -0.148 4.148 20 H 0.084 0.916 21 H 0.087 0.913 22 H 0.139 0.861 23 H 0.181 0.819 24 H 0.145 0.855 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.708 -3.518 -1.018 15.157 hybrid contribution 0.932 -0.121 0.697 1.170 sum -13.776 -3.639 -0.322 14.252 Atomic orbital electron populations 1.23423 0.76256 1.05858 1.02521 1.86105 1.23617 1.25811 1.88694 1.18648 0.91432 0.84672 0.96720 1.21195 1.01106 0.89463 1.06908 1.15596 0.90834 0.87029 1.06462 1.25647 0.92288 0.92500 0.92416 1.81211 1.10358 1.11071 1.10410 1.20985 0.91473 0.99049 1.01519 1.19990 0.96981 0.91896 0.93093 1.18170 0.86539 0.97013 0.96610 1.21388 0.91974 1.50731 0.92492 0.92281 1.25831 0.97207 0.94724 1.01282 1.70065 1.02654 1.51223 1.32853 0.85519 0.77717 0.78413 0.79870 1.19783 1.20909 1.19051 1.20595 0.91904 0.98438 1.03905 0.91558 0.91288 0.86078 0.81895 0.85460 0.96678 0.96704 0.92634 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.31 15 2 O -0.33 -8.21 10.50 -92.59 -0.97 -9.18 15 3 C 0.13 3.75 6.68 22.47 0.15 3.90 15 4 C -0.17 -4.18 8.74 22.64 0.20 -3.98 15 5 C 0.00 0.13 5.73 -21.38 -0.12 0.00 15 6 C 0.29 8.46 15.33 88.33 1.35 9.82 15 7 N -0.45 -14.69 18.54 19.00 0.35 -14.34 15 8 C -0.11 -3.83 9.40 22.54 0.21 -3.61 15 9 C -0.02 -0.76 5.06 -19.92 -0.10 -0.86 15 10 C 0.05 2.64 5.10 29.10 0.15 2.79 15 11 C -0.53 -28.41 9.09 25.60 0.23 -28.17 15 12 H 0.06 3.11 7.74 -2.91 -0.02 3.09 15 13 C 0.01 0.44 5.46 84.66 0.46 0.90 15 14 N -0.93 -53.88 13.29 21.45 0.28 -53.60 15 15 Si 0.96 42.89 29.54 68.60 2.03 44.91 15 16 H -0.27 -11.79 7.11 99.48 0.71 -11.09 15 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 15 19 C -0.13 -4.54 9.63 22.42 0.22 -4.32 15 20 H 0.07 0.83 7.66 -2.39 -0.02 0.81 15 21 H 0.07 0.81 7.66 -2.39 -0.02 0.80 15 22 H 0.12 1.19 8.14 -2.39 -0.02 1.17 15 23 H 0.16 2.95 6.29 -2.91 -0.02 2.93 15 24 H 0.13 4.47 8.06 -2.91 -0.02 4.45 15 25 H 0.01 0.78 8.09 -2.38 -0.02 0.76 15 26 H 0.01 0.77 8.08 -2.39 -0.02 0.75 15 27 H 0.26 14.51 8.31 -92.71 -0.77 13.74 15 28 H 0.13 4.61 8.06 -2.91 -0.02 4.58 15 Total: -1.00 -61.74 261.28 6.72 -55.02 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: 1.17 Total: -0.58 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 3.86 Total: -22.23 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: 0.64 Total: -67.94 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.97 Total: -9.18 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -61.74 6.72 -55.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306569583.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.091 kcal (2) G-P(sol) polarization free energy of solvation -61.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds